ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl02a09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK110648.1| Oryza sativa (japonica cultivar-group) cDNA clon... 361 1e-96
2gb|AC150751.1| Oryza sativa (japonica cultivar-group) chromosome... 264 2e-67
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 264 2e-67
4gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare str... 264 2e-67
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 264 2e-67
6ref|XM_792191.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.6
7gb|AC091965.2| Homo sapiens chromosome 5 clone RP11-480D4, compl... 42 1.6
8gb|AC034217.6| Homo sapiens chromosome 5 clone CTD-2004D16, comp... 42 1.6
9gb|AC160516.1| Medicago truncatula chromosome 7 BAC clone mth2-6... 42 1.6
10gb|AC004074.1|AC004074 Homo Sapiens Chromosome X clone bWXD759, ... 42 1.6
11ref|NM_122259.1| Arabidopsis thaliana ATP binding / damaged DNA ... 40 6.3
12gb|AF295186.1| Dendrocopos major recombination activating protei... 40 6.3
13gb|AC140026.11| Medicago truncatula clone mth2-36j24, complete s... 40 6.3
14gb|AY228038.1| Sylvia atricapilla NRM 976380 recombination activ... 40 6.3
15emb|AL513265.4| Human DNA sequence from clone RP13-377L5 on chro... 40 6.3
16emb|AL391811.7| Human DNA sequence from clone RP11-449J1 on chro... 40 6.3
17gb|AY165793.1| Megalaima virens recombination activating protein... 40 6.3
18gb|AY136434.2| Arabidopsis thaliana unknown protein (At5g23520) ... 40 6.3
19emb|AL136970.8| Human DNA sequence from clone RP1-238D4 on chrom... 40 6.3
20gb|BT000216.1| Arabidopsis thaliana unknown protein (At5g23520) ... 40 6.3
21gb|AC093689.4| Homo sapiens BAC clone RP11-725M22 from 4, comple... 40 6.3
22gb|AY057033.1| Sylvia nana recombination activating protein 1 (R... 40 6.3
23gb|AY057025.1| Psarisomus dalhousiae recombination activating pr... 40 6.3
24gb|AY057015.1| Pardalotus striatus recombination activating prot... 40 6.3
25gb|U54641.1|CTU54641 Chironomus thummi 220 kDa silk protein (sp2... 40 6.3
26dbj|AB120406.1| Equus caballus ILT11A mRNA for immunoglobulin-li... 40 6.3
27dbj|AB120404.1| Equus caballus ILT11A mRNA for immunoglobulin-li... 40 6.3
28dbj|AB120403.1| Equus caballus ILT11A mRNA for immunoglobulin-li... 40 6.3
29gb|AY140765.1| Anhima cornuta recombination activating protein (... 40 6.3
30dbj|AB025633.2| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.3
31gb|AF143735.1|AF143735 Turnix hottentotta recombination activati... 40 6.3
32gb|AY756083.1| Turnix varia recombination activating protein (RA... 40 6.3 
>dbj|AK110648.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-169-D10, full
            insert sequence
          Length = 1255

 Score =  361 bits (182), Expect = 1e-96
 Identities = 391/461 (84%)
 Strand = Plus / Plus

                                                                        
Query: 9    cagctacactccagcaaactatctttcattgattctgcacctttcatcaagaccttagaa 68
            |||||||| ||||||||| |  ||||||||||||| |||||||| || || ||||| |||
Sbjct: 773  cagctacagtccagcaaaatggctttcattgattcggcaccttttataaaaaccttggaa 832

                                                                        
Query: 69   ctagacaacggtgtccagcaggacagtcatgaatttctcaccttgtttttgtctctgctt 128
             |||| || ||||||||||||||||| |||||||| ||||| || ||||||||| |||| 
Sbjct: 833  ttagataatggtgtccagcaggacagccatgaattcctcacattatttttgtctttgctc 892

                                                                        
Query: 129  gagcgttcgttaagttactccaaggtcgctgttgcgaaaactattgtgcaagatttattt 188
            ||| ||||  ||||| | ||||||||  | |  || | ||| ||||||||  |||| || 
Sbjct: 893  gagggttcactaagtcattccaaggttccaggggctagaaccattgtgcagcatttgttc 952

                                                                        
Query: 189  cgcgggagtgtgtcacatgtgactcggtgttcatcatgtggaagggattctgatgcatct 248
            || || |||||||| ||||| |||||||| |||||||||||||||||||| || ||||||
Sbjct: 953  cgtggaagtgtgtcccatgttactcggtgctcatcatgtggaagggattccgaagcatct 1012

                                                                        
Query: 249  tcaaaaatggaagacttctatgaactggagctgaaccttaaaggtttaagtaatttagag 308
            ||||| ||||||||||| || ||||||||||| ||| |||||||||||| |||| |||| 
Sbjct: 1013 tcaaagatggaagacttttacgaactggagcttaacattaaaggtttaaataatctagaa 1072

                                                                        
Query: 309  gaaagtctggatgactatttgagtgtggaggcactgaatggggagaaccaatattcctgt 368
             ||||| |||||||||||||||||   ||||||||| |||| |||||||| || | ||||
Sbjct: 1073 caaagtttggatgactatttgagtactgaggcactggatggagagaaccagtacttctgt 1132

                                                                        
Query: 369  gagtcatgtcagaaaagggtagacgccacccgttgtataaaacttcgctcgcttcctcct 428
            ||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||
Sbjct: 1133 gagtcatgtcagaaaagggtagatgccactcgttgcataaaacttcgctcacttcctcct 1192

                                                     
Query: 429  gtcgttaattntcagctcaagcgatatgtattcctaccaaa 469
            || ||||||| |||||| || || ||||||||||| |||||
Sbjct: 1193 gttgttaattttcagctgaaacgctatgtattcctcccaaa 1233
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>gb|AC150751.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNOa0279P04, complete sequence
          Length = 32479

 Score =  264 bits (133), Expect = 2e-67
 Identities = 225/256 (87%)
 Strand = Plus / Plus

                                                                        
Query: 214  ggtgttcatcatgtggaagggattctgatgcatcttcaaaaatggaagacttctatgaac 273
            |||| |||||||||||||||||||| || ||||||||||| ||||||||||| || ||||
Sbjct: 3214 ggtgctcatcatgtggaagggattccgaagcatcttcaaagatggaagacttttacgaac 3273

                                                                        
Query: 274  tggagctgaaccttaaaggtttaagtaatttagaggaaagtctggatgactatttgagtg 333
            ||||||| ||| |||||||||||| |||| ||||  ||||| ||||||||||||||||| 
Sbjct: 3274 tggagcttaacattaaaggtttaaataatctagaacaaagtttggatgactatttgagta 3333

                                                                        
Query: 334  tggaggcactgaatggggagaaccaatattcctgtgagtcatgtcagaaaagggtagacg 393
              ||||||||| |||| |||||||| || | ||||||||||||||||||||||||||| |
Sbjct: 3334 ctgaggcactggatggagagaaccagtacttctgtgagtcatgtcagaaaagggtagatg 3393

                                                                        
Query: 394  ccacccgttgtataaaacttcgctcgcttcctcctgtcgttaattntcagctcaagcgat 453
            |||| ||||| |||||||||||||| ||||||||||| ||||||| |||||| || || |
Sbjct: 3394 ccactcgttgcataaaacttcgctcacttcctcctgttgttaattttcagctgaaacgct 3453

                            
Query: 454  atgtattcctaccaaa 469
            |||||||||| |||||
Sbjct: 3454 atgtattcctcccaaa 3469



 Score =  115 bits (58), Expect = 1e-22
 Identities = 124/146 (84%)
 Strand = Plus / Plus

                                                                        
Query: 9    cagctacactccagcaaactatctttcattgattctgcacctttcatcaagaccttagaa 68
            |||||||||||||||||| |  ||||||||||||| |||||||| || || ||||| |||
Sbjct: 2517 cagctacactccagcaaaatggctttcattgattcggcaccttttataaaaaccttggaa 2576

                                                                        
Query: 69   ctagacaacggtgtccagcaggacagtcatgaatttctcaccttgtttttgtctctgctt 128
             |||| || ||||||||||||||||| |||||||| ||||| || ||||||||| |||| 
Sbjct: 2577 ttagataatggtgtccagcaggacagccatgaattcctcacattatttttgtctttgctc 2636

                                      
Query: 129  gagcgttcgttaagttactccaaggt 154
            ||| ||||  ||||| | ||||||||
Sbjct: 2637 gagggttcactaagtcattccaaggt 2662
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  264 bits (133), Expect = 2e-67
 Identities = 225/256 (87%)
 Strand = Plus / Plus

                                                                           
Query: 214     ggtgttcatcatgtggaagggattctgatgcatcttcaaaaatggaagacttctatgaac 273
               |||| |||||||||||||||||||| || ||||||||||| ||||||||||| || ||||
Sbjct: 4819578 ggtgctcatcatgtggaagggattccgaagcatcttcaaagatggaagacttttacgaac 4819637

                                                                           
Query: 274     tggagctgaaccttaaaggtttaagtaatttagaggaaagtctggatgactatttgagtg 333
               ||||||| ||| |||||||||||| |||| ||||  ||||| ||||||||||||||||| 
Sbjct: 4819638 tggagcttaacattaaaggtttaaataatctagaacaaagtttggatgactatttgagta 4819697

                                                                           
Query: 334     tggaggcactgaatggggagaaccaatattcctgtgagtcatgtcagaaaagggtagacg 393
                 ||||||||| |||| |||||||| || | ||||||||||||||||||||||||||| |
Sbjct: 4819698 ctgaggcactggatggagagaaccagtacttctgtgagtcatgtcagaaaagggtagatg 4819757

                                                                           
Query: 394     ccacccgttgtataaaacttcgctcgcttcctcctgtcgttaattntcagctcaagcgat 453
               |||| ||||| |||||||||||||| ||||||||||| ||||||| |||||| || || |
Sbjct: 4819758 ccactcgttgcataaaacttcgctcacttcctcctgttgttaattttcagctgaaacgct 4819817

                               
Query: 454     atgtattcctaccaaa 469
               |||||||||| |||||
Sbjct: 4819818 atgtattcctcccaaa 4819833



 Score =  115 bits (58), Expect = 1e-22
 Identities = 124/146 (84%)
 Strand = Plus / Plus

                                                                           
Query: 9       cagctacactccagcaaactatctttcattgattctgcacctttcatcaagaccttagaa 68
               |||||||||||||||||| |  ||||||||||||| |||||||| || || ||||| |||
Sbjct: 4818881 cagctacactccagcaaaatggctttcattgattcggcaccttttataaaaaccttggaa 4818940

                                                                           
Query: 69      ctagacaacggtgtccagcaggacagtcatgaatttctcaccttgtttttgtctctgctt 128
                |||| || ||||||||||||||||| |||||||| ||||| || ||||||||| |||| 
Sbjct: 4818941 ttagataatggtgtccagcaggacagccatgaattcctcacattatttttgtctttgctc 4819000

                                         
Query: 129     gagcgttcgttaagttactccaaggt 154
               ||| ||||  ||||| | ||||||||
Sbjct: 4819001 gagggttcactaagtcattccaaggt 4819026
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>gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0019D17, from chromosome 3, complete sequence
          Length = 129658

 Score =  264 bits (133), Expect = 2e-67
 Identities = 225/256 (87%)
 Strand = Plus / Minus

                                                                         
Query: 214   ggtgttcatcatgtggaagggattctgatgcatcttcaaaaatggaagacttctatgaac 273
             |||| |||||||||||||||||||| || ||||||||||| ||||||||||| || ||||
Sbjct: 15877 ggtgctcatcatgtggaagggattccgaagcatcttcaaagatggaagacttttacgaac 15818

                                                                         
Query: 274   tggagctgaaccttaaaggtttaagtaatttagaggaaagtctggatgactatttgagtg 333
             ||||||| ||| |||||||||||| |||| ||||  ||||| ||||||||||||||||| 
Sbjct: 15817 tggagcttaacattaaaggtttaaataatctagaacaaagtttggatgactatttgagta 15758

                                                                         
Query: 334   tggaggcactgaatggggagaaccaatattcctgtgagtcatgtcagaaaagggtagacg 393
               ||||||||| |||| |||||||| || | ||||||||||||||||||||||||||| |
Sbjct: 15757 ctgaggcactggatggagagaaccagtacttctgtgagtcatgtcagaaaagggtagatg 15698

                                                                         
Query: 394   ccacccgttgtataaaacttcgctcgcttcctcctgtcgttaattntcagctcaagcgat 453
             |||| ||||| |||||||||||||| ||||||||||| ||||||| |||||| || || |
Sbjct: 15697 ccactcgttgcataaaacttcgctcacttcctcctgttgttaattttcagctgaaacgct 15638

                             
Query: 454   atgtattcctaccaaa 469
             |||||||||| |||||
Sbjct: 15637 atgtattcctcccaaa 15622



 Score =  115 bits (58), Expect = 1e-22
 Identities = 124/146 (84%)
 Strand = Plus / Minus

                                                                         
Query: 9     cagctacactccagcaaactatctttcattgattctgcacctttcatcaagaccttagaa 68
             |||||||||||||||||| |  ||||||||||||| |||||||| || || ||||| |||
Sbjct: 16574 cagctacactccagcaaaatggctttcattgattcggcaccttttataaaaaccttggaa 16515

                                                                         
Query: 69    ctagacaacggtgtccagcaggacagtcatgaatttctcaccttgtttttgtctctgctt 128
              |||| || ||||||||||||||||| |||||||| ||||| || ||||||||| |||| 
Sbjct: 16514 ttagataatggtgtccagcaggacagccatgaattcctcacattatttttgtctttgctc 16455

                                       
Query: 129   gagcgttcgttaagttactccaaggt 154
             ||| ||||  ||||| | ||||||||
Sbjct: 16454 gagggttcactaagtcattccaaggt 16429
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  264 bits (133), Expect = 2e-67
 Identities = 225/256 (87%)
 Strand = Plus / Plus

                                                                           
Query: 214     ggtgttcatcatgtggaagggattctgatgcatcttcaaaaatggaagacttctatgaac 273
               |||| |||||||||||||||||||| || ||||||||||| ||||||||||| || ||||
Sbjct: 4819693 ggtgctcatcatgtggaagggattccgaagcatcttcaaagatggaagacttttacgaac 4819752

                                                                           
Query: 274     tggagctgaaccttaaaggtttaagtaatttagaggaaagtctggatgactatttgagtg 333
               ||||||| ||| |||||||||||| |||| ||||  ||||| ||||||||||||||||| 
Sbjct: 4819753 tggagcttaacattaaaggtttaaataatctagaacaaagtttggatgactatttgagta 4819812

                                                                           
Query: 334     tggaggcactgaatggggagaaccaatattcctgtgagtcatgtcagaaaagggtagacg 393
                 ||||||||| |||| |||||||| || | ||||||||||||||||||||||||||| |
Sbjct: 4819813 ctgaggcactggatggagagaaccagtacttctgtgagtcatgtcagaaaagggtagatg 4819872

                                                                           
Query: 394     ccacccgttgtataaaacttcgctcgcttcctcctgtcgttaattntcagctcaagcgat 453
               |||| ||||| |||||||||||||| ||||||||||| ||||||| |||||| || || |
Sbjct: 4819873 ccactcgttgcataaaacttcgctcacttcctcctgttgttaattttcagctgaaacgct 4819932

                               
Query: 454     atgtattcctaccaaa 469
               |||||||||| |||||
Sbjct: 4819933 atgtattcctcccaaa 4819948



 Score =  115 bits (58), Expect = 1e-22
 Identities = 124/146 (84%)
 Strand = Plus / Plus

                                                                           
Query: 9       cagctacactccagcaaactatctttcattgattctgcacctttcatcaagaccttagaa 68
               |||||||||||||||||| |  ||||||||||||| |||||||| || || ||||| |||
Sbjct: 4818996 cagctacactccagcaaaatggctttcattgattcggcaccttttataaaaaccttggaa 4819055

                                                                           
Query: 69      ctagacaacggtgtccagcaggacagtcatgaatttctcaccttgtttttgtctctgctt 128
                |||| || ||||||||||||||||| |||||||| ||||| || ||||||||| |||| 
Sbjct: 4819056 ttagataatggtgtccagcaggacagccatgaattcctcacattatttttgtctttgctc 4819115

                                         
Query: 129     gagcgttcgttaagttactccaaggt 154
               ||| ||||  ||||| | ||||||||
Sbjct: 4819116 gagggttcactaagtcattccaaggt 4819141
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>ref|XM_792191.1| PREDICTED: Strongylocentrotus purpuratus similar to CG3104-PA,
           isoform A (LOC592680), mRNA
          Length = 756

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 95  tcatgaatttctcaccttgtttttg 119
           ||||| |||||||||||||||||||
Sbjct: 756 tcatgcatttctcaccttgtttttg 732
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>gb|AC091965.2| Homo sapiens chromosome 5 clone RP11-480D4, complete sequence
          Length = 163656

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 108   accttgtttttgtctctgctt 128
             |||||||||||||||||||||
Sbjct: 99702 accttgtttttgtctctgctt 99722
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>gb|AC034217.6| Homo sapiens chromosome 5 clone CTD-2004D16, complete sequence
          Length = 123259

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 108    accttgtttttgtctctgctt 128
              |||||||||||||||||||||
Sbjct: 116303 accttgtttttgtctctgctt 116323
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>gb|AC160516.1| Medicago truncatula chromosome 7 BAC clone mth2-66d22, complete
            sequence
          Length = 116154

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 234  gattctgatgcatcttcaaaa 254
            |||||||||||||||||||||
Sbjct: 2848 gattctgatgcatcttcaaaa 2828
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>gb|AC004074.1|AC004074 Homo Sapiens Chromosome X clone bWXD759, complete sequence
          Length = 153578

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 108    accttgtttttgtctctgctt 128
              |||||||||||||||||||||
Sbjct: 141771 accttgtttttgtctctgctt 141791
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>ref|NM_122259.1| Arabidopsis thaliana ATP binding / damaged DNA binding AT5G23520
           mRNA, complete cds
          Length = 1308

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 108 accttgtttttgtctctgcttgag 131
           ||||||||| ||||||||||||||
Sbjct: 69  accttgtttctgtctctgcttgag 46
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>gb|AF295186.1| Dendrocopos major recombination activating protein 1 (RAG-1) gene,
           partial cds
          Length = 930

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 314 tctggatgactatttgagtg 333
           ||||||||||||||||||||
Sbjct: 696 tctggatgactatttgagtg 715
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>gb|AC140026.11| Medicago truncatula clone mth2-36j24, complete sequence
          Length = 162172

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                             
Query: 224   atgtggaagggattctgatgcatcttcaaaaatggaagacttctatga 271
             ||||||||| || ||||| || ||||| ||||||||||| || |||||
Sbjct: 54117 atgtggaagagactctgaagcttcttccaaaatggaagatttttatga 54070
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>gb|AY228038.1| Sylvia atricapilla NRM 976380 recombination activating protein 1
           (RAG1) gene, partial cds
          Length = 930

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 310 aaagtctggatgactatttgagtg 333
           |||| |||||||||||||||||||
Sbjct: 692 aaagcctggatgactatttgagtg 715
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>emb|AL513265.4| Human DNA sequence from clone RP13-377L5 on chromosome X, complete
             sequence
          Length = 49560

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   gattctgatgcatcttcaaa 253
             ||||||||||||||||||||
Sbjct: 29015 gattctgatgcatcttcaaa 29034
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>emb|AL391811.7| Human DNA sequence from clone RP11-449J1 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 150424

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 365   ctgtgagtcatgtcagaaaa 384
             ||||||||||||||||||||
Sbjct: 55542 ctgtgagtcatgtcagaaaa 55523
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>gb|AY165793.1| Megalaima virens recombination activating protein 1 (RAG-1) gene,
           partial cds
          Length = 1914

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 314 tctggatgactatttgagtg 333
           ||||||||||||||||||||
Sbjct: 696 tctggatgactatttgagtg 715
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>gb|AY136434.2| Arabidopsis thaliana unknown protein (At5g23520) mRNA, complete cds
          Length = 1700

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 108 accttgtttttgtctctgcttgag 131
           ||||||||| ||||||||||||||
Sbjct: 319 accttgtttctgtctctgcttgag 296
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>emb|AL136970.8| Human DNA sequence from clone RP1-238D4 on chromosome 6 Contains part
             of the ME1 gene for malic enzyme 1 (NADP-dependent,
             cytosolic), complete sequence
          Length = 43983

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   tctcaccttgtttttgtctc 123
             ||||||||||||||||||||
Sbjct: 28497 tctcaccttgtttttgtctc 28516
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>gb|BT000216.1| Arabidopsis thaliana unknown protein (At5g23520) mRNA, complete cds
          Length = 1424

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 108 accttgtttttgtctctgcttgag 131
           ||||||||| ||||||||||||||
Sbjct: 69  accttgtttctgtctctgcttgag 46
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>gb|AC093689.4| Homo sapiens BAC clone RP11-725M22 from 4, complete sequence
          Length = 167590

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 164    gaaaactattgtgcaagatttatt 187
              ||||||||||||||||| ||||||
Sbjct: 133247 gaaaactattgtgcaagctttatt 133224
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>gb|AY057033.1| Sylvia nana recombination activating protein 1 (RAG-1) gene, partial
            cds
          Length = 2872

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 310  aaagtctggatgactatttgagtg 333
            |||| |||||||||||||||||||
Sbjct: 1650 aaagcctggatgactatttgagtg 1673
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>gb|AY057025.1| Psarisomus dalhousiae recombination activating protein 1 (RAG-1)
            gene, partial cds
          Length = 2872

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  tctggatgactatttgagtg 333
            ||||||||||||||||||||
Sbjct: 1654 tctggatgactatttgagtg 1673
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>gb|AY057015.1| Pardalotus striatus recombination activating protein 1 (RAG-1) gene,
            partial cds
          Length = 2866

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  tctggatgactatttgagtg 333
            ||||||||||||||||||||
Sbjct: 1648 tctggatgactatttgagtg 1667
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>gb|U54641.1|CTU54641 Chironomus thummi 220 kDa silk protein (sp220) mRNA, complete cds
          Length = 5468

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 80   tgtccagcaggacagtcatg 99
            ||||||||||||||||||||
Sbjct: 4102 tgtccagcaggacagtcatg 4121
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>dbj|AB120406.1| Equus caballus ILT11A mRNA for immunoglobulin-like transcript 11
          protein, complete cds, allele:ILT11A*00101 variant 3
          Length = 1013

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 71 agacaacggtgtccagcaggacag 94
          |||| |||||||||||||||||||
Sbjct: 24 agacgacggtgtccagcaggacag 1
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>dbj|AB120404.1| Equus caballus ILT11A mRNA for immunoglobulin-like transcript 11
           protein, complete cds, allele:ILT11A*00102 variant 1
          Length = 1169

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 71  agacaacggtgtccagcaggacag 94
           |||| |||||||||||||||||||
Sbjct: 106 agacgacggtgtccagcaggacag 83
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>dbj|AB120403.1| Equus caballus ILT11A mRNA for immunoglobulin-like transcript 11
           protein, complete cds, allele:ILT11A*00101 variant 1
          Length = 1169

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 71  agacaacggtgtccagcaggacag 94
           |||| |||||||||||||||||||
Sbjct: 106 agacgacggtgtccagcaggacag 83
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>gb|AY140765.1| Anhima cornuta recombination activating protein (RAG-1) gene, partial
            cds
          Length = 2856

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 310  aaagtctggatgactatttgagtg 333
            |||| |||||||||||||||||||
Sbjct: 1665 aaagcctggatgactatttgagtg 1688
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>dbj|AB025633.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQM1
          Length = 81365

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 108   accttgtttttgtctctgcttgag 131
             ||||||||| ||||||||||||||
Sbjct: 10279 accttgtttctgtctctgcttgag 10302
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>gb|AF143735.1|AF143735 Turnix hottentotta recombination activating protein 1 (RAG-1) gene,
            partial cds
          Length = 2902

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  tctggatgactatttgagtg 333
            ||||||||||||||||||||
Sbjct: 1684 tctggatgactatttgagtg 1703
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>gb|AY756083.1| Turnix varia recombination activating protein (RAG-1) gene, partial
           cds
          Length = 930

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 314 tctggatgactatttgagtg 333
           ||||||||||||||||||||
Sbjct: 696 tctggatgactatttgagtg 715


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,155,974
Number of Sequences: 3902068
Number of extensions: 4155974
Number of successful extensions: 71591
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71508
Number of HSP's gapped (non-prelim): 83
length of query: 469
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 447
effective length of database: 17,147,199,772
effective search space: 7664798298084
effective search space used: 7664798298084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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