ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl02a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 3.9
2dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 3.9
3gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genom... 38 3.9
4gb|AF175282.1|AF175282 Mus musculus zinc metalloendopeptidase AD... 38 3.9
5ref|NM_013906.1| Mus musculus a disintegrin-like and metallopept... 38 3.9
6emb|AL133304.4|CNS01DUL Human chromosome 14 DNA sequence BAC R-1... 38 3.9

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 31       ggcgatgagctgtgtctag 49
                |||||||||||||||||||
Sbjct: 34873783 ggcgatgagctgtgtctag 34873801



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 31       ggcgatgagctgtgtctag 49
                |||||||||||||||||||
Sbjct: 34963855 ggcgatgagctgtgtctag 34963873



to top

>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete
              sequence
          Length = 171376

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 31     ggcgatgagctgtgtctag 49
              |||||||||||||||||||
Sbjct: 141697 ggcgatgagctgtgtctag 141679



to top

>gb|AF175282.1|AF175282 Mus musculus zinc metalloendopeptidase ADAMTS8 mRNA, complete cds
          Length = 3638

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 28  ggcggcgatgagctgtgtc 46
           |||||||||||||||||||
Sbjct: 622 ggcggcgatgagctgtgtc 640



to top

>ref|NM_013906.1| Mus musculus a disintegrin-like and metallopeptidase (reprolysin
           type) with thrombospondin type 1 motif, 8 (Adamts8),
           mRNA
          Length = 3638

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 28  ggcggcgatgagctgtgtc 46
           |||||||||||||||||||
Sbjct: 622 ggcggcgatgagctgtgtc 640



to top

>emb|AL133304.4|CNS01DUL Human chromosome 14 DNA sequence BAC R-116N8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 141905

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    agctgtgtctaggagggca 56
             |||||||||||||||||||
Sbjct: 20302 agctgtgtctaggagggca 20284


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 143,415
Number of Sequences: 3902068
Number of extensions: 143415
Number of successful extensions: 7974
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7960
Number of HSP's gapped (non-prelim): 14
length of query: 90
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 69
effective length of database: 17,151,101,840
effective search space: 1183426026960
effective search space used: 1183426026960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top