ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl02a03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474307.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2457 Score = 369 bits (186), Expect = 6e-99 Identities = 219/230 (95%) Strand = Plus / Plus Query: 251 gaggaagagaagaagaacctcaactcggagctgtggcacgcctgcgccggcccgctcgtc 310 ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 64 gaggaagagaagaagtgcctcaactcggagctatggcacgcctgcgccggcccgctcgtc 123 Query: 311 tgcctccccaccctcggcacgcgcgtcgtctacttcccgcagggccacagcgagcaggtg 370 |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 124 tgcctccccaccgtcggcacgcgcgtcgtctacttcccgcaaggccacagcgagcaggtg 183 Query: 371 gcggcgtcgacgaacaaggaggtggaggggcacatccccaactaccccaacctgccgccg 430 ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| || Sbjct: 184 gcggcgtcgacgaacaaggaggtggagggtcacatcccgaactaccccaacctgccggcg 243 Query: 431 cagctgatctgccagctgcacgacgtcacaatgcatgccgatgtggagac 480 ||||||||||||||||| ||||| |||||||||||||| ||||||||||| Sbjct: 244 cagctgatctgccagctccacgatgtcacaatgcatgcggatgtggagac 293
>dbj|AK071455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093B04, full insert sequence Length = 3262 Score = 369 bits (186), Expect = 6e-99 Identities = 219/230 (95%) Strand = Plus / Plus Query: 251 gaggaagagaagaagaacctcaactcggagctgtggcacgcctgcgccggcccgctcgtc 310 ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 399 gaggaagagaagaagtgcctcaactcggagctatggcacgcctgcgccggcccgctcgtc 458 Query: 311 tgcctccccaccctcggcacgcgcgtcgtctacttcccgcagggccacagcgagcaggtg 370 |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 459 tgcctccccaccgtcggcacgcgcgtcgtctacttcccgcaaggccacagcgagcaggtg 518 Query: 371 gcggcgtcgacgaacaaggaggtggaggggcacatccccaactaccccaacctgccgccg 430 ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| || Sbjct: 519 gcggcgtcgacgaacaaggaggtggagggtcacatcccgaactaccccaacctgccggcg 578 Query: 431 cagctgatctgccagctgcacgacgtcacaatgcatgccgatgtggagac 480 ||||||||||||||||| ||||| |||||||||||||| ||||||||||| Sbjct: 579 cagctgatctgccagctccacgatgtcacaatgcatgcggatgtggagac 628
>dbj|AB071298.1| Oryza sativa OsARF8 mRNA for auxin response factor 8, partial cds Length = 2388 Score = 357 bits (180), Expect = 2e-95 Identities = 213/224 (95%) Strand = Plus / Plus Query: 257 gagaagaagaacctcaactcggagctgtggcacgcctgcgccggcccgctcgtctgcctc 316 ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1 gagaagaagtgcctcaactcggagctatggcacgcctgcgccggcccgctcgtctgcctc 60 Query: 317 cccaccctcggcacgcgcgtcgtctacttcccgcagggccacagcgagcaggtggcggcg 376 |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 61 cccaccgtcggcacgcgcgtcgtctacttcccgcaaggccacagcgagcaggtggcggcg 120 Query: 377 tcgacgaacaaggaggtggaggggcacatccccaactaccccaacctgccgccgcagctg 436 ||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||| Sbjct: 121 tcgacgaacaaggaggtggagggtcacatcccgaactaccccaacctgccggcgcagctg 180 Query: 437 atctgccagctgcacgacgtcacaatgcatgccgatgtggagac 480 ||||||||||| ||||| |||||||||||||| ||||||||||| Sbjct: 181 atctgccagctccacgatgtcacaatgcatgcggatgtggagac 224
>emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004A17, complete sequence Length = 159894 Score = 188 bits (95), Expect = 1e-44 Identities = 110/115 (95%) Strand = Plus / Minus Query: 256 agagaagaagaacctcaactcggagctgtggcacgcctgcgccggcccgctcgtctgcct 315 |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 43441 agagaagaagtgcctcaactcggagctatggcacgcctgcgccggcccgctcgtctgcct 43382 Query: 316 ccccaccctcggcacgcgcgtcgtctacttcccgcagggccacagcgagcaggtg 370 ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 43381 ccccaccgtcggcacgcgcgtcgtctacttcccgcaaggccacagcgagcaggtg 43327 Score = 163 bits (82), Expect = 7e-37 Identities = 97/102 (95%) Strand = Plus / Minus Query: 366 aggtggcggcgtcgacgaacaaggaggtggaggggcacatccccaactaccccaacctgc 425 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 43216 aggtggcggcgtcgacgaacaaggaggtggagggtcacatcccgaactaccccaacctgc 43157 Query: 426 cgccgcagctgatctgccagctgcacgacgtcacaatgcatg 467 || ||||||||||||||||||| ||||| ||||||||||||| Sbjct: 43156 cggcgcagctgatctgccagctccacgatgtcacaatgcatg 43115
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 188 bits (95), Expect = 1e-44 Identities = 110/115 (95%) Strand = Plus / Minus Query: 256 agagaagaagaacctcaactcggagctgtggcacgcctgcgccggcccgctcgtctgcct 315 |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 34319038 agagaagaagtgcctcaactcggagctatggcacgcctgcgccggcccgctcgtctgcct 34318979 Query: 316 ccccaccctcggcacgcgcgtcgtctacttcccgcagggccacagcgagcaggtg 370 ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 34318978 ccccaccgtcggcacgcgcgtcgtctacttcccgcaaggccacagcgagcaggtg 34318924 Score = 163 bits (82), Expect = 7e-37 Identities = 97/102 (95%) Strand = Plus / Minus Query: 366 aggtggcggcgtcgacgaacaaggaggtggaggggcacatccccaactaccccaacctgc 425 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 34318813 aggtggcggcgtcgacgaacaaggaggtggagggtcacatcccgaactaccccaacctgc 34318754 Query: 426 cgccgcagctgatctgccagctgcacgacgtcacaatgcatg 467 || ||||||||||||||||||| ||||| ||||||||||||| Sbjct: 34318753 cggcgcagctgatctgccagctccacgatgtcacaatgcatg 34318712 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 270 tcaactcggagctgtggcacgcctgcgccggcccgct 306 ||||||||||||| |||||||| || ||||| ||||| Sbjct: 33926799 tcaactcggagctctggcacgcttgtgccgggccgct 33926763
>emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0624F09, complete sequence Length = 95419 Score = 188 bits (95), Expect = 1e-44 Identities = 110/115 (95%) Strand = Plus / Minus Query: 256 agagaagaagaacctcaactcggagctgtggcacgcctgcgccggcccgctcgtctgcct 315 |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 91329 agagaagaagtgcctcaactcggagctatggcacgcctgcgccggcccgctcgtctgcct 91270 Query: 316 ccccaccctcggcacgcgcgtcgtctacttcccgcagggccacagcgagcaggtg 370 ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 91269 ccccaccgtcggcacgcgcgtcgtctacttcccgcaaggccacagcgagcaggtg 91215 Score = 163 bits (82), Expect = 7e-37 Identities = 97/102 (95%) Strand = Plus / Minus Query: 366 aggtggcggcgtcgacgaacaaggaggtggaggggcacatccccaactaccccaacctgc 425 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 91104 aggtggcggcgtcgacgaacaaggaggtggagggtcacatcccgaactaccccaacctgc 91045 Query: 426 cgccgcagctgatctgccagctgcacgacgtcacaatgcatg 467 || ||||||||||||||||||| ||||| ||||||||||||| Sbjct: 91044 cggcgcagctgatctgccagctccacgatgtcacaatgcatg 91003
>emb|AL732355.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0322F07, complete sequence Length = 100419 Score = 188 bits (95), Expect = 1e-44 Identities = 110/115 (95%) Strand = Plus / Minus Query: 256 agagaagaagaacctcaactcggagctgtggcacgcctgcgccggcccgctcgtctgcct 315 |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 4194 agagaagaagtgcctcaactcggagctatggcacgcctgcgccggcccgctcgtctgcct 4135 Query: 316 ccccaccctcggcacgcgcgtcgtctacttcccgcagggccacagcgagcaggtg 370 ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 4134 ccccaccgtcggcacgcgcgtcgtctacttcccgcaaggccacagcgagcaggtg 4080 Score = 163 bits (82), Expect = 7e-37 Identities = 97/102 (95%) Strand = Plus / Minus Query: 366 aggtggcggcgtcgacgaacaaggaggtggaggggcacatccccaactaccccaacctgc 425 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 3969 aggtggcggcgtcgacgaacaaggaggtggagggtcacatcccgaactaccccaacctgc 3910 Query: 426 cgccgcagctgatctgccagctgcacgacgtcacaatgcatg 467 || ||||||||||||||||||| ||||| ||||||||||||| Sbjct: 3909 cggcgcagctgatctgccagctccacgatgtcacaatgcatg 3868
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 149 bits (75), Expect = 1e-32 Identities = 96/103 (93%) Strand = Plus / Plus Query: 268 cctcaactcggagctgtggcacgcctgcgccggcccgctcgtctgcctccccaccctcgg 327 |||||||| |||||| |||||||||||| || |||||||||||||||||||| || |||| Sbjct: 28541919 cctcaacttggagctctggcacgcctgctccagcccgctcgtctgcctcccctccgtcgg 28541978 Query: 328 cacgcgcgtcgtctacttcccgcagggccacagcgagcaggtg 370 |||||||||||||||||||||||| |||||||||||||||||| Sbjct: 28541979 cacgcgcgtcgtctacttcccgcaaggccacagcgagcaggtg 28542021 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 270 tcaactcggagctgtggcacgcctgcgccggcccgctcgtctgcctccccaccctcggca 329 |||||||||||||||||||||| ||||||||||||||||| | || || | | |||| Sbjct: 2214445 tcaactcggagctgtggcacgcgtgcgccggcccgctcgtgtcgctgccgccggtgggca 2214386 Query: 330 cgcgcgtcgtctacttcccgcagggccacagcgagcaggt 369 | |||||||||||||||||| ||||||||||||||||| Sbjct: 2214385 gcctcgtcgtctacttcccgcaaggccacagcgagcaggt 2214346 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 404 atccccaactaccccaacctgccgccgcagctgatctgccagct 447 ||||||||||| || ||||||||||||||||| || |||||||| Sbjct: 3488636 atccccaactatcctaacctgccgccgcagcttatatgccagct 3488679
>dbj|AP005859.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1053A04 Length = 144321 Score = 149 bits (75), Expect = 1e-32 Identities = 96/103 (93%) Strand = Plus / Plus Query: 268 cctcaactcggagctgtggcacgcctgcgccggcccgctcgtctgcctccccaccctcgg 327 |||||||| |||||| |||||||||||| || |||||||||||||||||||| || |||| Sbjct: 5932 cctcaacttggagctctggcacgcctgctccagcccgctcgtctgcctcccctccgtcgg 5991 Query: 328 cacgcgcgtcgtctacttcccgcagggccacagcgagcaggtg 370 |||||||||||||||||||||||| |||||||||||||||||| Sbjct: 5992 cacgcgcgtcgtctacttcccgcaaggccacagcgagcaggtg 6034
>dbj|AP004786.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017H11 Length = 158374 Score = 149 bits (75), Expect = 1e-32 Identities = 96/103 (93%) Strand = Plus / Plus Query: 268 cctcaactcggagctgtggcacgcctgcgccggcccgctcgtctgcctccccaccctcgg 327 |||||||| |||||| |||||||||||| || |||||||||||||||||||| || |||| Sbjct: 110760 cctcaacttggagctctggcacgcctgctccagcccgctcgtctgcctcccctccgtcgg 110819 Query: 328 cacgcgcgtcgtctacttcccgcagggccacagcgagcaggtg 370 |||||||||||||||||||||||| |||||||||||||||||| Sbjct: 110820 cacgcgcgtcgtctacttcccgcaaggccacagcgagcaggtg 110862
>emb|AJ234409.1|HVU234409 Hordeum vulgare partial mRNA; clone cMWG0660 Length = 485 Score = 97.6 bits (49), Expect = 3e-17 Identities = 49/49 (100%) Strand = Plus / Plus Query: 435 tgatctgccagctgcacgacgtcacaatgcatgccgatgtggagaccga 483 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3 tgatctgccagctgcacgacgtcacaatgcatgccgatgtggagaccga 51
>ref|XM_464101.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3420 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 270 tcaactcggagctgtggcacgcctgcgccggcccgctcgtctgcctccccaccctcggca 329 |||||||||||||||||||||| ||||||||||||||||| | || || | | |||| Sbjct: 113 tcaactcggagctgtggcacgcgtgcgccggcccgctcgtgtcgctgccgccggtgggca 172 Query: 330 cgcgcgtcgtctacttcccgcagggccacagcgagcaggt 369 | |||||||||||||||||| ||||||||||||||||| Sbjct: 173 gcctcgtcgtctacttcccgcaaggccacagcgagcaggt 212
>dbj|AP005721.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_E07 Length = 113187 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 270 tcaactcggagctgtggcacgcctgcgccggcccgctcgtctgcctccccaccctcggca 329 |||||||||||||||||||||| ||||||||||||||||| | || || | | |||| Sbjct: 1394 tcaactcggagctgtggcacgcgtgcgccggcccgctcgtgtcgctgccgccggtgggca 1335 Query: 330 cgcgcgtcgtctacttcccgcagggccacagcgagcaggt 369 | |||||||||||||||||| ||||||||||||||||| Sbjct: 1334 gcctcgtcgtctacttcccgcaaggccacagcgagcaggt 1295
>dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1679_B08 Length = 142529 Score = 87.7 bits (44), Expect = 3e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 270 tcaactcggagctgtggcacgcctgcgccggcccgctcgtctgcctccccaccctcggca 329 |||||||||||||||||||||| ||||||||||||||||| | || || | | |||| Sbjct: 129138 tcaactcggagctgtggcacgcgtgcgccggcccgctcgtgtcgctgccgccggtgggca 129079 Query: 330 cgcgcgtcgtctacttcccgcagggccacagcgagcaggt 369 | |||||||||||||||||| ||||||||||||||||| Sbjct: 129078 gcctcgtcgtctacttcccgcaaggccacagcgagcaggt 129039
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 334 cgtcgtctacttcccgcagggccacagcgagcaggtg 370 ||||||||||||||| ||||||||||||||||||||| Sbjct: 29142217 cgtcgtctacttcccccagggccacagcgagcaggtg 29142253 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 270 tcaactcggagctgtggcacgcctgcgccggcccgct 306 |||||||||||||||||||||||||||| || ||||| Sbjct: 29142153 tcaactcggagctgtggcacgcctgcgcggggccgct 29142189 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 279 agctgtggcacgcctgcgccggc 301 ||||||||||||||||||||||| Sbjct: 28203533 agctgtggcacgcctgcgccggc 28203555 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 334 cgtcgtctacttcccgcagggccacagcgagcaggtg 370 |||||| |||||||| ||||| || |||||||||||| Sbjct: 4937685 cgtcgtgtacttccctcagggtcatagcgagcaggtg 4937721
>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0596H10 Length = 166570 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 334 cgtcgtctacttcccgcagggccacagcgagcaggtg 370 ||||||||||||||| ||||||||||||||||||||| Sbjct: 157204 cgtcgtctacttcccccagggccacagcgagcaggtg 157240 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 270 tcaactcggagctgtggcacgcctgcgccggcccgct 306 |||||||||||||||||||||||||||| || ||||| Sbjct: 157140 tcaactcggagctgtggcacgcctgcgcggggccgct 157176
>dbj|AP004324.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1215_E11 Length = 105301 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 334 cgtcgtctacttcccgcagggccacagcgagcaggtg 370 ||||||||||||||| ||||||||||||||||||||| Sbjct: 9504 cgtcgtctacttcccccagggccacagcgagcaggtg 9540 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 270 tcaactcggagctgtggcacgcctgcgccggcccgct 306 |||||||||||||||||||||||||||| || ||||| Sbjct: 9440 tcaactcggagctgtggcacgcctgcgcggggccgct 9476
>dbj|AK103312.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125G19, full insert sequence Length = 3550 Score = 63.9 bits (32), Expect = 5e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 334 cgtcgtctacttcccgcagggccacagcgagcaggt 369 ||||||||||||||| |||||||||||||||||||| Sbjct: 515 cgtcgtctacttcccccagggccacagcgagcaggt 550 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 270 tcaactcggagctgtggcacgcctgcgccggcccgct 306 |||||||||||||||||||||||||||| || ||||| Sbjct: 451 tcaactcggagctgtggcacgcctgcgcggggccgct 487
>dbj|AB071296.1| Oryza sativa OsARF7a mRNA for auxin response factor 7a, partial cds Length = 3372 Score = 63.9 bits (32), Expect = 5e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 334 cgtcgtctacttcccgcagggccacagcgagcaggt 369 ||||||||||||||| |||||||||||||||||||| Sbjct: 90 cgtcgtctacttcccccagggccacagcgagcaggt 125 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 270 tcaactcggagctgtggcacgcctgcgccggcccgct 306 |||||||||||||||||||||||||||| || ||||| Sbjct: 26 tcaactcggagctgtggcacgcctgcgcggggccgct 62
>dbj|AK067061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091D19, full insert sequence Length = 3265 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 339 tctacttcccgcagggccacagcgagcaggtggcggcgtcgacgaac 385 ||||| ||||||||||||||| ||||||||||| ||| ||||||||| Sbjct: 444 tctacctcccgcagggccacatcgagcaggtggaggcatcgacgaac 490
>dbj|AK065254.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J11, full insert sequence Length = 3100 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 339 tctacttcccgcagggccacagcgagcaggtggcggcgtcgacgaac 385 ||||| ||||||||||||||| ||||||||||| ||| ||||||||| Sbjct: 295 tctacctcccgcagggccacatcgagcaggtggaggcatcgacgaac 341
>ref|NM_189992.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2481 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 334 cgtcgtctacttcccgcagggccacagcgagcaggtggcggcgtc 378 |||| |||||||||||||||| |||| ||||||||||| |||||| Sbjct: 111 cgtcttctacttcccgcaggggcacatcgagcaggtggaggcgtc 155 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 278 gagctgtggcacgcctgcgccggcccgctcgtc 310 |||||||||||||||||||| || ||||||||| Sbjct: 55 gagctgtggcacgcctgcgcggggccgctcgtc 87
>dbj|AK072309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022C23, full insert sequence Length = 3151 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 334 cgtcgtctacttcccgcagggccacagcgagcaggtggcggcgtc 378 |||| |||||||||||||||| |||| ||||||||||| |||||| Sbjct: 333 cgtcttctacttcccgcaggggcacatcgagcaggtggaggcgtc 377 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 278 gagctgtggcacgcctgcgccggcccgctcgtc 310 |||||||||||||||||||| || ||||||||| Sbjct: 277 gagctgtggcacgcctgcgcggggccgctcgtc 309
>dbj|AB071293.1| Oryza sativa OsARF2 mRNA for auxin response factor 2, partial cds Length = 2376 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 334 cgtcgtctacttcccgcagggccacagcgagcaggtggcggcgtc 378 |||| |||||||||||||||| |||| ||||||||||| |||||| Sbjct: 75 cgtcttctacttcccgcaggggcacatcgagcaggtggaggcgtc 119 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 278 gagctgtggcacgcctgcgccggcccgctcgtc 310 |||||||||||||||||||| || ||||||||| Sbjct: 19 gagctgtggcacgcctgcgcggggccgctcgtc 51
>ref|XM_464221.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3236 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 404 atccccaactaccccaacctgccgccgcagctgatctgccagct 447 ||||||||||| || ||||||||||||||||| || |||||||| Sbjct: 360 atccccaactatcctaacctgccgccgcagcttatatgccagct 403
>ref|XM_506725.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1661_C12.26 mRNA Length = 3885 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 404 atccccaactaccccaacctgccgccgcagctgatctgccagct 447 ||||||||||| || ||||||||||||||||| || |||||||| Sbjct: 982 atccccaactatcctaacctgccgccgcagcttatatgccagct 1025
>dbj|AP004863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0023I17 Length = 141852 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 404 atccccaactaccccaacctgccgccgcagctgatctgccagct 447 ||||||||||| || ||||||||||||||||| || |||||||| Sbjct: 33431 atccccaactatcctaacctgccgccgcagcttatatgccagct 33474
>dbj|AP004093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1661_C12 Length = 122214 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 404 atccccaactaccccaacctgccgccgcagctgatctgccagct 447 ||||||||||| || ||||||||||||||||| || |||||||| Sbjct: 101459 atccccaactatcctaacctgccgccgcagcttatatgccagct 101502
>dbj|AK070569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056C15, full insert sequence Length = 3885 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 404 atccccaactaccccaacctgccgccgcagctgatctgccagct 447 ||||||||||| || ||||||||||||||||| || |||||||| Sbjct: 982 atccccaactatcctaacctgccgccgcagcttatatgccagct 1025
>dbj|AK066725.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074M13, full insert sequence Length = 3235 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 404 atccccaactaccccaacctgccgccgcagctgatctgccagct 447 ||||||||||| || ||||||||||||||||| || |||||||| Sbjct: 360 atccccaactatcctaacctgccgccgcagcttatatgccagct 403
>dbj|AB071294.1| Oryza sativa OsARF6a mRNA for auxin response factor 6a, partial cds Length = 1188 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 404 atccccaactaccccaacctgccgccgcagctgatctgccagct 447 ||||||||||| || ||||||||||||||||| || |||||||| Sbjct: 151 atccccaactatcctaacctgccgccgcagcttatatgccagct 194
>gb|DQ013802.1| Phyllostachys praecox ARF1 mRNA, partial cds Length = 1108 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 339 tctacttcccgcagggccacagcgagcaggtggcggcgtcgacgaac 385 |||||||||| ||||| |||| ||||||||| | ||||||||||||| Sbjct: 155 tctacttccctcaggggcacatcgagcaggtcgaggcgtcgacgaac 201
>gb|AF140228.2| Oryza sativa (indica cultivar-group) putative auxin response factor 1 mRNA, partial cds Length = 2574 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 339 tctacttcccgcagggccacagcgagcaggtggcggcgtcgac 381 |||||||||||||||| |||| ||||||||||| ||| ||||| Sbjct: 179 tctacttcccgcaggggcacatcgagcaggtggaggcctcgac 221
>emb|AJ306306.1|OSA306306 Oryza sativa subsp. japonica mRNA for auxin response factor 1 (arf1 gene) Length = 2511 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 339 tctacttcccgcagggccacagcgagcaggtggcggcgtcgac 381 |||||||||||||||| |||| ||||||||||| ||| ||||| Sbjct: 131 tctacttcccgcaggggcacatcgagcaggtggaggcctcgac 173
>dbj|AK065936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045A03, full insert sequence Length = 3338 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 339 tctacttcccgcagggccacagcgagcaggtggcggcgtcgac 381 |||||||||||||||| |||| ||||||||||| ||| ||||| Sbjct: 413 tctacttcccgcaggggcacatcgagcaggtggaggcctcgac 455
>ref|XM_483368.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3342 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 336 tcgtctacttcccgcagggccacagcgagcaggt 369 ||||||||||||| ||||| |||||||||||||| Sbjct: 131 tcgtctacttcccccagggtcacagcgagcaggt 164
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 336 tcgtctacttcccgcagggccacagcgagcaggt 369 ||||||||||||| ||||| |||||||||||||| Sbjct: 25870172 tcgtctacttcccccagggtcacagcgagcaggt 25870139
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 334 cgtcgtctacttcccgcagggccacagcgagcaggtgg 371 |||| |||||||||||||||| |||| ||||||||||| Sbjct: 40688469 cgtcttctacttcccgcaggggcacatcgagcaggtgg 40688506 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 278 gagctgtggcacgcctgcgccggcccgctcgtc 310 |||||||||||||||||||| || ||||||||| Sbjct: 40688413 gagctgtggcacgcctgcgcggggccgctcgtc 40688445 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 277 ggagctgtggcacgcctgcgccggccc 303 ||||||||||||||||||||| ||||| Sbjct: 27500169 ggagctgtggcacgcctgcgctggccc 27500143 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 cgaacaaggaggtggagggg 400 |||||||||||||||||||| Sbjct: 25455615 cgaacaaggaggtggagggg 25455596
>dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0093F16 Length = 160925 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 334 cgtcgtctacttcccgcagggccacagcgagcaggtgg 371 |||| |||||||||||||||| |||| ||||||||||| Sbjct: 130447 cgtcttctacttcccgcaggggcacatcgagcaggtgg 130484 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 278 gagctgtggcacgcctgcgccggcccgctcgtc 310 |||||||||||||||||||| || ||||||||| Sbjct: 130391 gagctgtggcacgcctgcgcggggccgctcgtc 130423
>dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1003_A09 Length = 150755 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 336 tcgtctacttcccgcagggccacagcgagcaggt 369 ||||||||||||| ||||| |||||||||||||| Sbjct: 55959 tcgtctacttcccccagggtcacagcgagcaggt 55926
>dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0689E12 Length = 147516 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 336 tcgtctacttcccgcagggccacagcgagcaggt 369 ||||||||||||| ||||| |||||||||||||| Sbjct: 142383 tcgtctacttcccccagggtcacagcgagcaggt 142350
>dbj|AK111639.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122A07, full insert sequence Length = 2048 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 336 tcgtctacttcccgcagggccacagcgagcaggt 369 ||||||||||||| ||||| |||||||||||||| Sbjct: 267 tcgtctacttcccccagggtcacagcgagcaggt 300
>dbj|AB071297.1| Oryza sativa OsARF7b mRNA for auxin response factor 7b, partial cds Length = 3291 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 336 tcgtctacttcccgcagggccacagcgagcaggt 369 ||||||||||||| ||||| |||||||||||||| Sbjct: 80 tcgtctacttcccccagggtcacagcgagcaggt 113
>dbj|AK121703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074F07, full insert sequence Length = 3878 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 335 gtcgtctacttcccgcagggccacagcgagcaggtggcggc 375 ||||||||||| || |||||||| ||||||||||| ||||| Sbjct: 960 gtcgtctactttccacagggccatagcgagcaggttgcggc 1000
>dbj|AK065025.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001G10, full insert sequence Length = 3843 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 335 gtcgtctacttcccgcagggccacagcgagcaggtggcggc 375 ||||||||||| || |||||||| ||||||||||| ||||| Sbjct: 962 gtcgtctactttccacagggccatagcgagcaggttgcggc 1002
>dbj|AB071295.1| Oryza sativa OsARF6b mRNA for auxin response factor 6b, partial cds Length = 2643 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 335 gtcgtctacttcccgcagggccacagcgagcaggtggcggc 375 ||||||||||| || |||||||| ||||||||||| ||||| Sbjct: 82 gtcgtctactttccacagggccatagcgagcaggttgcggc 122
>gb|AC150702.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1356E08, complete sequence Length = 136853 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Minus Query: 339 tctacttcccgcagggccacagcgagcaggtg 370 |||||||||||||||| |||| |||||||||| Sbjct: 133847 tctacttcccgcaggggcacatcgagcaggtg 133816
>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0056I10, complete sequence Length = 158833 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Minus Query: 339 tctacttcccgcagggccacagcgagcaggtg 370 |||||||||||||||| |||| |||||||||| Sbjct: 10616 tctacttcccgcaggggcacatcgagcaggtg 10585
>gb|AC109645.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0410D09, complete sequence Length = 43883 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Minus Query: 339 tctacttcccgcagggccacagcgagcaggtg 370 |||||||||||||||| |||| |||||||||| Sbjct: 42510 tctacttcccgcaggggcacatcgagcaggtg 42479
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Minus Query: 339 tctacttcccgcagggccacagcgagcaggtg 370 ||||| ||||||||||||||| |||||||||| Sbjct: 17618209 tctacctcccgcagggccacatcgagcaggtg 17618178 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 335 gtcgtctacttcccgcagggccacagcgagcaggt 369 ||||||||||| || |||||||| ||||||||||| Sbjct: 26040555 gtcgtctactttccacagggccatagcgagcaggt 26040521
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Minus Query: 339 tctacttcccgcagggccacagcgagcaggtg 370 |||||||||||||||| |||| |||||||||| Sbjct: 18275251 tctacttcccgcaggggcacatcgagcaggtg 18275220
>dbj|AK069517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025F06, full insert sequence Length = 1518 Score = 48.1 bits (24), Expect = 0.027 Identities = 27/28 (96%) Strand = Plus / Plus Query: 343 cttcccgcagggccacagcgagcaggtg 370 ||||||||| |||||||||||||||||| Sbjct: 6 cttcccgcaaggccacagcgagcaggtg 33
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Minus Query: 339 tctacttcccgcagggccacagcgagcaggtg 370 |||||||||||||||| |||| |||||||||| Sbjct: 18434531 tctacttcccgcaggggcacatcgagcaggtg 18434500
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Minus Query: 339 tctacttcccgcagggccacagcgagcaggtg 370 ||||| ||||||||||||||| |||||||||| Sbjct: 17572580 tctacctcccgcagggccacatcgagcaggtg 17572549 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 335 gtcgtctacttcccgcagggccacagcgagcaggt 369 ||||||||||| || |||||||| ||||||||||| Sbjct: 25968731 gtcgtctactttccacagggccatagcgagcaggt 25968697
>emb|AL935066.2|CNS08CCI Oryza sativa chromosome 12, . BAC OSJNBa0005P03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 162200 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Minus Query: 339 tctacttcccgcagggccacagcgagcaggtg 370 ||||| ||||||||||||||| |||||||||| Sbjct: 110545 tctacctcccgcagggccacatcgagcaggtg 110514
>ref|NM_191956.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2190 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 277 ggagctgtggcacgcctgcgccggccc 303 ||||||||||||||||||||| ||||| Sbjct: 114 ggagctgtggcacgcctgcgctggccc 140
>gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0053D02, complete sequence Length = 157106 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 278 gagctgtggcacgcctgcgccgg 300 ||||||||||||||||||||||| Sbjct: 44805 gagctgtggcacgcctgcgccgg 44827
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 278 gagctgtggcacgcctgcgccgg 300 ||||||||||||||||||||||| Sbjct: 27814388 gagctgtggcacgcctgcgccgg 27814410
>dbj|AP003706.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1125_C04 Length = 98476 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 277 ggagctgtggcacgcctgcgccggccc 303 ||||||||||||||||||||| ||||| Sbjct: 20872 ggagctgtggcacgcctgcgctggccc 20846
>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0623A10 Length = 156517 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 279 agctgtggcacgcctgcgccggc 301 ||||||||||||||||||||||| Sbjct: 1562 agctgtggcacgcctgcgccggc 1584
>dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0009H10 Length = 175754 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 279 agctgtggcacgcctgcgccggc 301 ||||||||||||||||||||||| Sbjct: 134439 agctgtggcacgcctgcgccggc 134461
>dbj|AK099793.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097E23, full insert sequence Length = 2712 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 278 gagctgtggcacgcctgcgccgg 300 ||||||||||||||||||||||| Sbjct: 336 gagctgtggcacgcctgcgccgg 358
>dbj|AK100322.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079H12, full insert sequence Length = 3026 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 279 agctgtggcacgcctgcgccggc 301 ||||||||||||||||||||||| Sbjct: 697 agctgtggcacgcctgcgccggc 719
>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161806 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 335 gtcgtctacttcccgcagggccacagcgagcaggt 369 ||||||||||| || |||||||| ||||||||||| Sbjct: 71116 gtcgtctactttccacagggccatagcgagcaggt 71150
>dbj|AB071299.1| Oryza sativa OsARF10 mRNA for auxin response factor 10, partial cds Length = 2100 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 279 agctgtggcacgcctgcgccggc 301 ||||||||||||||||||||||| Sbjct: 68 agctgtggcacgcctgcgccggc 90
>dbj|AB071291.1| Oryza sativa OsETTIN2 mRNA for Arabidopsis ETTIN-like protein 2, complete cds Length = 2811 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 277 ggagctgtggcacgcctgcgccggccc 303 ||||||||||||||||||||| ||||| Sbjct: 271 ggagctgtggcacgcctgcgctggccc 297
>dbj|AB071290.1| Oryza sativa OsETTIN1 mRNA for Arabidopsis ETTIN-like protein 1, complete cds Length = 2622 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 278 gagctgtggcacgcctgcgccgg 300 ||||||||||||||||||||||| Sbjct: 228 gagctgtggcacgcctgcgccgg 250
>ref|NM_001036038.1| Arabidopsis thaliana ARF6 (AUXIN RESPONSE FACTOR 6) AT1G30330 (ARF6) transcript variant AT1G30330.2 mRNA, complete cds Length = 3111 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Plus Query: 428 ccgcagctgatctgccagctgcacgacgtcacaatgcatgccgatgtggagac 480 |||||||| ||||| ||||| || | || ||||||||||| ||||||||||| Sbjct: 223 ccgcagcttatctgtcagcttcataatgttacaatgcatgctgatgtggagac 275
>ref|NM_102771.2| Arabidopsis thaliana ARF6 (AUXIN RESPONSE FACTOR 6); transcription factor AT1G30330 (ARF6) transcript variant AT1G30330.1 mRNA, complete cds Length = 3868 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Plus Query: 428 ccgcagctgatctgccagctgcacgacgtcacaatgcatgccgatgtggagac 480 |||||||| ||||| ||||| || | || ||||||||||| ||||||||||| Sbjct: 980 ccgcagcttatctgtcagcttcataatgttacaatgcatgctgatgtggagac 1032
>ref|XM_474238.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2865 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 270 tcaactcggagctgtggcacgcctgcgccggcccgct 306 ||||||||||||| |||||||| || ||||| ||||| Sbjct: 107 tcaactcggagctctggcacgcttgtgccgggccgct 143
>emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01, complete sequence Length = 163448 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 270 tcaactcggagctgtggcacgcctgcgccggcccgct 306 ||||||||||||| |||||||| || ||||| ||||| Sbjct: 138698 tcaactcggagctctggcacgcttgtgccgggccgct 138662
>emb|AJ716227.1| Brassica napus mRNA for putative auxin response factor (ARF2 gene) Length = 2547 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 339 tctacttcccgcagggccacagcgagcaggtgg 371 |||||||||| ||||| |||| ||||||||||| Sbjct: 227 tctacttccctcaggggcacatcgagcaggtgg 259
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 413 taccccaacctgccgccgcagctga 437 |||||||||||||||| |||||||| Sbjct: 1201300 taccccaacctgccgcggcagctga 1201324
>dbj|AP003510.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0528E04 Length = 170701 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 334 cgtcgtctacttcccgcagggccacagcgagcaggtg 370 |||||| |||||||| ||||| || |||||||||||| Sbjct: 125168 cgtcgtgtacttccctcagggtcatagcgagcaggtg 125204
>dbj|AK103452.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129I11, full insert sequence Length = 3831 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 270 tcaactcggagctgtggcacgcctgcgccggcccgct 306 ||||||||||||| |||||||| || ||||| ||||| Sbjct: 647 tcaactcggagctctggcacgcttgtgccgggccgct 683
>dbj|AK103105.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118O21, full insert sequence Length = 2602 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 270 tcaactcggagctgtggcacgcctgcgccggcccgct 306 ||||||||||||| |||||||| || ||||| ||||| Sbjct: 500 tcaactcggagctctggcacgcttgtgccgggccgct 536
>ref|NM_211968.1| Eremothecium gossypii AGR240Wp (AGR240W), mRNA Length = 1359 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 413 taccccaacctgccgccgcagctga 437 |||||||||||||||| |||||||| Sbjct: 559 taccccaacctgccgcggcagctga 583
>gb|AF013467.1|AF013467 Arabidopsis thaliana ARF6 (ARF6) mRNA, complete cds Length = 3832 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Plus Query: 428 ccgcagctgatctgccagctgcacgacgtcacaatgcatgccgatgtggagac 480 |||||||| ||||| ||||| || | || ||||||||||| ||||||||||| Sbjct: 969 ccgcagcttatctgtcagcttcataatgttacaatgcatgctgatgtggagac 1021
>gb|AY669788.1| Arabidopsis thaliana clone C105343 ARF6 (At1g30330) mRNA, complete cds Length = 2839 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Plus Query: 428 ccgcagctgatctgccagctgcacgacgtcacaatgcatgccgatgtggagac 480 |||||||| ||||| ||||| || | || ||||||||||| ||||||||||| Sbjct: 223 ccgcagcttatctgtcagcttcataatgttacaatgcatgctgatgtggagac 275
>dbj|AB071292.1| Oryza sativa OsMP mRNA for Arabidopsis Monopteros-like protein, complete cds Length = 2868 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 270 tcaactcggagctgtggcacgcctgcgccggcccgct 306 ||||||||||||| |||||||| || ||||| ||||| Sbjct: 107 tcaactcggagctctggcacgcttgtgccgggccgct 143
>ref|NM_192965.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 213 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 cgaacaaggaggtggagggg 400 |||||||||||||||||||| Sbjct: 41 cgaacaaggaggtggagggg 60
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 tggggtaccgccgggcggat 130 |||||||||||||||||||| Sbjct: 905364 tggggtaccgccgggcggat 905383
>gb|AY376128.1| Triticum aestivum ETTIN-like auxin response factor (ETT1-alpha) mRNA, partial cds Length = 2256 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 gtcgtctacttcccgcagggccac 358 ||||||||| |||||||||||||| Sbjct: 2 gtcgtctacctcccgcagggccac 25
>emb|AL162758.2|NMA7Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 7/7 Length = 195767 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 aacctgccgccgcagctgat 438 |||||||||||||||||||| Sbjct: 131943 aacctgccgccgcagctgat 131924
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 ctaccccaacctgccgccgc 431 |||||||||||||||||||| Sbjct: 220086 ctaccccaacctgccgccgc 220067
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 aacctgccgccgcagctgat 438 |||||||||||||||||||| Sbjct: 323972 aacctgccgccgcagctgat 323991
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 ggcggcgtcgacgaacaagg 389 |||||||||||||||||||| Sbjct: 5654159 ggcggcgtcgacgaacaagg 5654178
>gb|AC016699.10| Homo sapiens BAC clone RP11-173M4 from 2, complete sequence Length = 54480 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 351 agggccacagcgagcaggtggcgg 374 ||||||||||| |||||||||||| Sbjct: 7464 agggccacagccagcaggtggcgg 7441
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 292 ctgcgccggcccgctcgtctgcctccccaccc 323 ||||||||||||||||| |||| | ||||||| Sbjct: 4377820 ctgcgccggcccgctcgactgcatgcccaccc 4377789
>dbj|AP007251.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, fosmid clone:OSJNOa234E14 Length = 34070 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 cgaacaaggaggtggagggg 400 |||||||||||||||||||| Sbjct: 15885 cgaacaaggaggtggagggg 15866
>dbj|AP004317.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0663E10 Length = 162297 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 cgaacaaggaggtggagggg 400 |||||||||||||||||||| Sbjct: 145615 cgaacaaggaggtggagggg 145596
>dbj|AK103327.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125L14, full insert sequence Length = 4166 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 334 cgtcgtctacttcccgcagggccacagcgagcaggt 369 |||||| |||||||| ||||| || ||||||||||| Sbjct: 600 cgtcgtgtacttccctcagggtcatagcgagcaggt 635 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,414,212 Number of Sequences: 3902068 Number of extensions: 3414212 Number of successful extensions: 72235 Number of sequences better than 10.0: 92 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 71147 Number of HSP's gapped (non-prelim): 1090 length of query: 483 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 461 effective length of database: 17,147,199,772 effective search space: 7904859094892 effective search space used: 7904859094892 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
