>VG28_BPMU (Q9T1W6) Protein gp28|
          Length = 551

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 206 PGREIQIRRFRGSERYSRVTSQSRHGLLQ 292
           P R+I + RF   + +  +T Q RHG++Q
Sbjct: 301 PARDIPVLRFEAPDDFESLTPQMRHGIVQ 329

>MENF_PASMU (Q9CPI5) Menaquinone-specific isochorismate synthase (EC 5.4.4.2)|
           (Isochorismate mutase)
          Length = 431

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 319 ADQVEWCLWLQQPMARLR 266
           ADQ EWC W++Q + +++
Sbjct: 160 ADQAEWCRWVEQGLQKIK 177

>MRS3_YEAST (P10566) Mitochondrial RNA-splicing protein MRS3|
          Length = 314

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 98  VLKESSFRYSSPEFSMTPVVHCSVGTIS 181
           V+ ESS ++ +P     P++HC  G+IS
Sbjct: 202 VIYESSTKFLNPSNEYNPLIHCLCGSIS 229

>DDL_MYCSM (Q9ZGN0) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine|
           synthetase) (D-Ala-D-Ala ligase)
          Length = 373

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 305 FHLISMYKRSWSSANNRLRTLSAAAVETDVA 397
           F  ISMY R W++      TL AA V+T +A
Sbjct: 337 FTTISMYPRMWAAGGIDYPTLLAAMVDTAIA 367


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,252,185
Number of Sequences: 219361
Number of extensions: 966457
Number of successful extensions: 2048
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2048
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)