ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl01h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RIC1_YEAST (P40395) Protein RIC1 37 0.012
2ACCN3_HUMAN (Q9UHC3) Amiloride-sensitive cation channel 3 (Acid-... 29 3.4
3YTUB_ENTAG (Q47826) Hypothetical protein in tutB 3'region (Fragm... 28 5.8
4NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 pr... 28 7.5
5ACCN3_MOUSE (Q6X1Y6) Amiloride-sensitive cation channel 3 (Acid-... 27 9.8

>RIC1_YEAST (P40395) Protein RIC1|
          Length = 1056

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = -3

Query: 93  YLIMARKKKVLCF---VSYFSDSWKPPLCVRLC 4
           YL++  K+K++CF   +   S SWKPP  ++LC
Sbjct: 366 YLVVVYKEKIICFDTRIKKVSHSWKPPFVIKLC 398



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>ACCN3_HUMAN (Q9UHC3) Amiloride-sensitive cation channel 3 (Acid-sensing ion|
           channel 3) (ASIC3) (hASIC3) (Testis sodium channel 1)
           (hTNaC1)
          Length = 531

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/17 (76%), Positives = 13/17 (76%)
 Frame = -2

Query: 295 HLSLPRRPHTPPAAVTK 245
           HLSL  RP TPP AVTK
Sbjct: 500 HLSLGPRPPTPPCAVTK 516



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>YTUB_ENTAG (Q47826) Hypothetical protein in tutB 3'region (Fragment)|
          Length = 204

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 319 RDHPPVGRHLSLPRRPHTPPAAVTKA 242
           RDHP +   L+ P +PH+ P  + +A
Sbjct: 140 RDHPLIVADLAQPHQPHSAPGIIVEA 165



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>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch 2)|
            (hN2) [Contains: Notch 2 extracellular truncation; Notch
            2 intracellular domain]
          Length = 2471

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 322  PRDHPPVGRHLSLPRRPHTP 263
            P+  PP G+H++ PR P  P
Sbjct: 2284 PQSRPPEGKHITTPREPLPP 2303



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>ACCN3_MOUSE (Q6X1Y6) Amiloride-sensitive cation channel 3 (Acid-sensing ion|
           channel 3) (ASIC3) (Dorsal root ASIC) (DRASIC)
          Length = 530

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -2

Query: 319 RDHPPVGRHLSLPRRPHTPPAAVTK 245
           R H P   HLSL  RP T P+AVTK
Sbjct: 494 RTHVP---HLSLGPRPPTAPSAVTK 515


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,628,787
Number of Sequences: 219361
Number of extensions: 473700
Number of successful extensions: 1261
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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