ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl01h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY332722.1| Homo sapiens insulin-like growth factor 1 recepto... 52 0.002
2gb|AC118658.4| Homo sapiens chromosome 15, clone RP11-35O15, com... 52 0.002
3gb|AC118660.5| Homo sapiens chromosome 15, clone RP11-631H11, co... 52 0.002
4gb|AC026369.21|AC026369 Homo sapiens 12 BAC RP11-598F7 (Roswell ... 50 0.007
5emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1... 50 0.007
6gb|AC137735.5| Homo sapiens chromosome 17, clone CTD-2582D11, co... 46 0.11
7emb|BX842599.1| Neurospora crassa DNA linkage group II BAC clone... 46 0.11
8gb|AC096689.5| Oryza sativa chromosome 3 BAC OSJNBa0027J18 genom... 44 0.42
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.42
10gb|AY534685.1| Homo sapiens insulin-like growth factor binding p... 44 0.42
11gb|AC122905.3| Mus musculus BAC clone RP23-47A1 from 10, complet... 44 0.42
12gb|AC148335.4| Mus musculus BAC clone RP23-103H10 from chromosom... 44 0.42
13gb|DP000004.1| Lemur catta target 1 genomic scaffold 44 0.42
14gb|AC138559.3| Lemur catta clone LB2-251E18, complete sequence 44 0.42
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
16gb|AC007563.2| Homo sapiens BAC clone RP11-506C8 from 2, complet... 44 0.42
17gb|AC123542.4| Lemur catta clone LB2-136L13, complete sequence 44 0.42
18emb|AL833787.8| Mouse DNA sequence from clone RP23-228E2 on chro... 44 0.42
19gb|AC114896.5| Oryza sativa chromosome 3 BAC OSJNBa0091B22 genom... 42 1.7
20emb|AL683842.11| Human DNA sequence from clone RP11-47G11 on chr... 42 1.7
21gb|AC138769.4| Mus musculus chromosome 18 clone RP23-235B1, comp... 42 1.7
22gb|AC093711.3| Sus scrofa clone RP44-453O1, complete sequence 42 1.7
23emb|AL928657.21| Zebrafish DNA sequence from clone CH211-194I10 ... 42 1.7
24emb|AL773587.11| Mouse DNA sequence from clone RP23-38J2 on chro... 42 1.7
25gb|AF499002.1| Alternaria brassicicola major allergen-like prote... 42 1.7
26gb|AC019302.14| Mus musculus chromosome 8, clone RP23-428G22, co... 42 1.7
27gb|AY550246.1| Paracoccidioides brasiliensis small G-protein GPA... 42 1.7
28emb|AL929033.7| Mouse DNA sequence from clone RP23-427N17 on chr... 42 1.7
29emb|CR956434.13| M.truncatula DNA sequence from clone MTH2-35N9 ... 42 1.7
30emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 42 1.7
31emb|AL133400.19| Mouse DNA sequence from clone RP21-598F11 on ch... 42 1.7
32gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 6.6
33gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
34gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
35gb|AC153152.4| Mus musculus BAC clone RP23-78F1 from chromosome ... 40 6.6
36gb|AC150573.4| Bos taurus BAC CH240-238N22 (Children's Hospital... 40 6.6
37gb|AC130483.6| Mus musculus chromosome 15, clone RP24-137D10, co... 40 6.6
38gb|AC116461.13| Mus musculus chromosome 10, clone RP23-463P8, co... 40 6.6
39gb|AC112675.12| Mus musculus chromosome 1, clone RP23-138J12, co... 40 6.6
40emb|CT009527.5| Mouse DNA sequence from clone RP23-25D11 on chro... 40 6.6
41gb|AC144479.1| Pan troglodytes BAC clone RP43-126P12 from 7, com... 40 6.6
42emb|AL356124.17| Human DNA sequence from clone RP1-69D17 on chro... 40 6.6
43emb|AL353710.7| Human DNA sequence from clone RP11-470P4 on chro... 40 6.6
44gb|AC163436.3| Mus musculus chromosome 1, clone RP23-102H12, com... 40 6.6
45emb|CR861438.1| Pongo pygmaeus mRNA; cDNA DKFZp459K212 (from clo... 40 6.6
46emb|CR860731.1| Pongo pygmaeus mRNA; cDNA DKFZp459J0327 (from cl... 40 6.6
47emb|CR860453.1| Pongo pygmaeus mRNA; cDNA DKFZp459P201 (from clo... 40 6.6
48gb|AC026786.5| Homo sapiens chromosome 12 clone CTD-2140B24, com... 40 6.6
49emb|AL115780.1|CNS01COC Botrytis cinerea strain T4 cDNA library 40 6.6
50emb|AL114808.1|CNS01BXC Botrytis cinerea strain T4 cDNA library 40 6.6
51dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
52gb|AC073911.38| Homo sapiens 12 BAC RP11-386I8 (Roswell Park Can... 40 6.6
53dbj|BS000102.1| Pan troglodytes chromosome 22 clone:RP43-107D21,... 40 6.6
54emb|AL603926.6| Human DNA sequence from clone RP11-356L9 on chro... 40 6.6
55dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 6.6
56gb|AC102900.12| Mus musculus chromosome 1, clone RP24-315J13, co... 40 6.6
57gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
58emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 6.6
59gb|AC000123.1|HSAC000123 Human Cosmid g0771a106, complete sequence 40 6.6
60gb|U56090.1|NCU56090 Neurospora crassa G protein alpha subunit (... 40 6.6
61dbj|AP001341.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 6.6 
>gb|AY332722.1| Homo sapiens insulin-like growth factor 1 receptor (IGF1R) gene,
             complete cds
          Length = 309626

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 142   ctccaacctccaacctccaacctcca 167
             ||||||||||||||||||||||||||
Sbjct: 15442 ctccaacctccaacctccaacctcca 15417



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 142   ctccaacctccaacctccaacctcca 167
             ||||||||||||||||||||||||||
Sbjct: 15435 ctccaacctccaacctccaacctcca 15410



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 145   caacctccaacctccaacctcca 167
             |||||||||||||||||||||||
Sbjct: 15446 caacctccaacctccaacctcca 15424
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>gb|AC118658.4| Homo sapiens chromosome 15, clone RP11-35O15, complete sequence
          Length = 168727

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 142    ctccaacctccaacctccaacctcca 167
              ||||||||||||||||||||||||||
Sbjct: 167477 ctccaacctccaacctccaacctcca 167452



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 142    ctccaacctccaacctccaacctcca 167
              ||||||||||||||||||||||||||
Sbjct: 167470 ctccaacctccaacctccaacctcca 167445



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 145    caacctccaacctccaacctcca 167
              |||||||||||||||||||||||
Sbjct: 167481 caacctccaacctccaacctcca 167459
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>gb|AC118660.5| Homo sapiens chromosome 15, clone RP11-631H11, complete sequence
          Length = 167851

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 142    ctccaacctccaacctccaacctcca 167
              ||||||||||||||||||||||||||
Sbjct: 124050 ctccaacctccaacctccaacctcca 124025



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 142    ctccaacctccaacctccaacctcca 167
              ||||||||||||||||||||||||||
Sbjct: 124043 ctccaacctccaacctccaacctcca 124018



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 145    caacctccaacctccaacctcca 167
              |||||||||||||||||||||||
Sbjct: 124054 caacctccaacctccaacctcca 124032
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>gb|AC026369.21|AC026369 Homo sapiens 12 BAC RP11-598F7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 136725

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 142   ctccaacctccaacctccaacctcc 166
             |||||||||||||||||||||||||
Sbjct: 81583 ctccaacctccaacctccaacctcc 81607



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 145   caacctccaacctccaacctcca 167
             |||||||||||||||||||||||
Sbjct: 81579 caacctccaacctccaacctcca 81601
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>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 142    ctccaacctccaacctccaacctcc 166
              |||||||||||||||||||||||||
Sbjct: 324713 ctccaacctccaacctccaacctcc 324689



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 147    acctccaacctccaacctcca 167
              |||||||||||||||||||||
Sbjct: 324715 acctccaacctccaacctcca 324695
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>gb|AC137735.5| Homo sapiens chromosome 17, clone CTD-2582D11, complete sequence
          Length = 169483

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 144    ccaacctccaacctccaacctcc 166
              |||||||||||||||||||||||
Sbjct: 146023 ccaacctccaacctccaacctcc 146045
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>emb|BX842599.1| Neurospora crassa DNA linkage group II BAC clone B10A24
          Length = 85694

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 145   caacctccaacctccaacctcca 167
             |||||||||||||||||||||||
Sbjct: 54777 caacctccaacctccaacctcca 54799



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 142   ctccaacctccaacctccaacctcca 167
             |||||||||||||||||||| |||||
Sbjct: 54781 ctccaacctccaacctccaagctcca 54806
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>gb|AC096689.5| Oryza sativa chromosome 3 BAC OSJNBa0027J18 genomic sequence, complete
             sequence
          Length = 112892

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 99    aacaaaccatgctcgttttgct 120
             ||||||||||||||||||||||
Sbjct: 36398 aacaaaccatgctcgttttgct 36377
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 99       aacaaaccatgctcgttttgct 120
                ||||||||||||||||||||||
Sbjct: 29813063 aacaaaccatgctcgttttgct 29813084



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 148      cctccaacctccaacctccag 168
                |||||||||||||||||||||
Sbjct: 17796819 cctccaacctccaacctccag 17796839
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>gb|AY534685.1| Homo sapiens insulin-like growth factor binding protein 5 (IGFBP5)
             gene, complete cds
          Length = 22855

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 141   tctccaacctccaacctccaacctcc 166
             |||||||||||| |||||||||||||
Sbjct: 14200 tctccaacctcctacctccaacctcc 14225
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>gb|AC122905.3| Mus musculus BAC clone RP23-47A1 from 10, complete sequence
          Length = 152690

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 145   caacctccaacctccaacctcc 166
             ||||||||||||||||||||||
Sbjct: 95839 caacctccaacctccaacctcc 95818
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>gb|AC148335.4| Mus musculus BAC clone RP23-103H10 from chromosome 10, complete
             sequence
          Length = 210685

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 145   caacctccaacctccaacctcc 166
             ||||||||||||||||||||||
Sbjct: 54058 caacctccaacctccaacctcc 54037
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>gb|DP000004.1| Lemur catta target 1 genomic scaffold
          Length = 1399362

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 141    tctccaacctccaacctccaacctcc 166
              |||||||||||||||||| |||||||
Sbjct: 660854 tctccaacctccaacctctaacctcc 660879
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>gb|AC138559.3| Lemur catta clone LB2-251E18, complete sequence
          Length = 171058

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 141    tctccaacctccaacctccaacctcc 166
              |||||||||||||||||| |||||||
Sbjct: 158589 tctccaacctccaacctctaacctcc 158614
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 99       aacaaaccatgctcgttttgct 120
                ||||||||||||||||||||||
Sbjct: 29904485 aacaaaccatgctcgttttgct 29904506



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 148      cctccaacctccaacctccag 168
                |||||||||||||||||||||
Sbjct: 17790360 cctccaacctccaacctccag 17790380
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>gb|AC007563.2| Homo sapiens BAC clone RP11-506C8 from 2, complete sequence
          Length = 179859

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 141    tctccaacctccaacctccaacctcc 166
              |||||||||||| |||||||||||||
Sbjct: 147637 tctccaacctcctacctccaacctcc 147662
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>gb|AC123542.4| Lemur catta clone LB2-136L13, complete sequence
          Length = 158703

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 141  tctccaacctccaacctccaacctcc 166
            |||||||||||||||||| |||||||
Sbjct: 4290 tctccaacctccaacctctaacctcc 4315
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>emb|AL833787.8| Mouse DNA sequence from clone RP23-228E2 on chromosome 2, complete
              sequence
          Length = 237055

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 314    ccttttccagccccacactcaa 335
              ||||||||||||||||||||||
Sbjct: 141209 ccttttccagccccacactcaa 141230
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>gb|AC114896.5| Oryza sativa chromosome 3 BAC OSJNBa0091B22 genomic sequence, complete
             sequence
          Length = 115815

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 148   cctccaacctccaacctccag 168
             |||||||||||||||||||||
Sbjct: 95296 cctccaacctccaacctccag 95276
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>emb|AL683842.11| Human DNA sequence from clone RP11-47G11 on chromosome 10 Contains the
              gene for B cell RAG associated protein (GALNAC4S-6ST)
              (BRAG, KIAA0598), a novel pseudogene and three CpG islands,
              complete sequence
          Length = 149244

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 152    caacctccaacctccaggcgt 172
              |||||||||||||||||||||
Sbjct: 147007 caacctccaacctccaggcgt 146987
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>gb|AC138769.4| Mus musculus chromosome 18 clone RP23-235B1, complete sequence
          Length = 189897

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 142    ctccaacctccaacctccaacctcc 166
              ||||||||||||||| |||||||||
Sbjct: 127177 ctccaacctccaacccccaacctcc 127201
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>gb|AC093711.3| Sus scrofa clone RP44-453O1, complete sequence
          Length = 178791

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 142    ctccaacctccaacctccaacctcc 166
              |||||||||||| ||||||||||||
Sbjct: 164102 ctccaacctccaccctccaacctcc 164078
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>emb|AL928657.21| Zebrafish DNA sequence from clone CH211-194I10 in linkage group 3,
              complete sequence
          Length = 187734

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 294    atcaagcaaacacccaaatcc 314
              |||||||||||||||||||||
Sbjct: 114909 atcaagcaaacacccaaatcc 114889
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>emb|AL773587.11| Mouse DNA sequence from clone RP23-38J2 on chromosome X, complete
              sequence
          Length = 175713

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 409    gccactcttttctgctacctt 429
              |||||||||||||||||||||
Sbjct: 163238 gccactcttttctgctacctt 163218
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>gb|AF499002.1| Alternaria brassicicola major allergen-like protein precursor
           (Altb1) mRNA, complete cds
          Length = 815

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 143 tccaacctccaacctccaacc 163
           |||||||||||||||||||||
Sbjct: 173 tccaacctccaacctccaacc 193
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>gb|AC019302.14| Mus musculus chromosome 8, clone RP23-428G22, complete sequence
          Length = 241836

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 140    ctctccaacctccaacctcca 160
              |||||||||||||||||||||
Sbjct: 203685 ctctccaacctccaacctcca 203705
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>gb|AY550246.1| Paracoccidioides brasiliensis small G-protein GPA1 (gpa1) gene,
            complete cds
          Length = 3825

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 146  aacctccaacctccaacctcc 166
            |||||||||||||||||||||
Sbjct: 1199 aacctccaacctccaacctcc 1219
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>emb|AL929033.7| Mouse DNA sequence from clone RP23-427N17 on chromosome 2, complete
             sequence
          Length = 164571

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 30    ttctttctaccacccctgttt 50
             |||||||||||||||||||||
Sbjct: 97810 ttctttctaccacccctgttt 97830
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>emb|CR956434.13| M.truncatula DNA sequence from clone MTH2-35N9 on chromosome 3,
             complete sequence
          Length = 113074

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 142   ctccaacctccaacctccaacctcc 166
             |||||||| ||||||||||||||||
Sbjct: 50577 ctccaacccccaacctccaacctcc 50553
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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 144    ccaacctccaacctccaacctccag 168
              ||||| |||||||||||||||||||
Sbjct: 843141 ccaacttccaacctccaacctccag 843117
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>emb|AL133400.19| Mouse DNA sequence from clone RP21-598F11 on chromosome X, complete
             sequence
          Length = 86674

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 409   gccactcttttctgctacctt 429
             |||||||||||||||||||||
Sbjct: 45300 gccactcttttctgctacctt 45280
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>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete
               sequence
          Length = 2105742

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 147     acctccaacctccaacctcc 166
               ||||||||||||||||||||
Sbjct: 1655657 acctccaacctccaacctcc 1655638
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>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0011J22 map R10571S, complete sequence
          Length = 154441

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   ctctccaacctccaacctcc 159
             ||||||||||||||||||||
Sbjct: 14633 ctctccaacctccaacctcc 14614
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>gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0073K23
              map near R10571S, complete sequence
          Length = 161073

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    ctctccaacctccaacctcc 159
              ||||||||||||||||||||
Sbjct: 113934 ctctccaacctccaacctcc 113915
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>gb|AC153152.4| Mus musculus BAC clone RP23-78F1 from chromosome 12, complete sequence
          Length = 184523

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 306    cccaaatcccttttccagcc 325
              ||||||||||||||||||||
Sbjct: 108112 cccaaatcccttttccagcc 108131
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>gb|AC150573.4| Bos taurus  BAC CH240-238N22 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 163445

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    ctccaacctccaacctccag 168
              ||||||||||||||||||||
Sbjct: 125849 ctccaacctccaacctccag 125868



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    tctccaacctccaacctcca 160
              ||||||||||||||||||||
Sbjct: 125848 tctccaacctccaacctcca 125867
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>gb|AC130483.6| Mus musculus chromosome 15, clone RP24-137D10, complete sequence
          Length = 137626

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   cactcccaactcccaagctc 142
             ||||||||||||||||||||
Sbjct: 79458 cactcccaactcccaagctc 79477
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>gb|AC116461.13| Mus musculus chromosome 10, clone RP23-463P8, complete sequence
          Length = 203737

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 371   cctttgcaaatccttcctgggatt 394
             ||||||||||||||||||| ||||
Sbjct: 54588 cctttgcaaatccttcctgagatt 54565
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>gb|AC112675.12| Mus musculus chromosome 1, clone RP23-138J12, complete sequence
          Length = 278715

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 372    ctttgcaaatccttcctggg 391
              ||||||||||||||||||||
Sbjct: 133185 ctttgcaaatccttcctggg 133204
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>emb|CT009527.5| Mouse DNA sequence from clone RP23-25D11 on chromosome 13, complete
             sequence
          Length = 226804

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   tgagatcaagcaaacaccca 309
             ||||||||||||||||||||
Sbjct: 79342 tgagatcaagcaaacaccca 79323
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>gb|AC144479.1| Pan troglodytes BAC clone RP43-126P12 from 7, complete sequence
          Length = 211515

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    ctctccaacctccaacctcc 159
              ||||||||||||||||||||
Sbjct: 160294 ctctccaacctccaacctcc 160275
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>emb|AL356124.17| Human DNA sequence from clone RP1-69D17 on chromosome 6 The two
            published cDNAs for gene LAMA2 have a deletion with
            respect to our clone, at clone position 75717.
            Consequently our translation is different from that
            published. We have resequenced 24 chromosomes from
            different individuals that all support the sequence
            presented here. ESTs also support our sequence, complete
            sequence
          Length = 106687

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   tctttctttctaccacccct 46
            ||||||||||||||||||||
Sbjct: 6042 tctttctttctaccacccct 6023
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>emb|AL353710.7| Human DNA sequence from clone RP11-470P4 on chromosome 9 Contains a
             novel gene, the 5' end of the CHAC gene for chorea
             acanthocytosis and a CpG island, complete sequence
          Length = 110633

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   atccatcaccaacttttatt 242
             ||||||||||||||||||||
Sbjct: 93249 atccatcaccaacttttatt 93230
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>gb|AC163436.3| Mus musculus chromosome 1, clone RP23-102H12, complete sequence
          Length = 198253

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    cccaactcccaagctctcca 146
              ||||||||||||||||||||
Sbjct: 125764 cccaactcccaagctctcca 125783
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>emb|CR861438.1| Pongo pygmaeus mRNA; cDNA DKFZp459K212 (from clone DKFZp459K212)
          Length = 4091

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 140 ctctccaacctccaacctcc 159
           ||||||||||||||||||||
Sbjct: 41  ctctccaacctccaacctcc 22
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>emb|CR860731.1| Pongo pygmaeus mRNA; cDNA DKFZp459J0327 (from clone DKFZp459J0327)
          Length = 4137

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 140 ctctccaacctccaacctcc 159
           ||||||||||||||||||||
Sbjct: 82  ctctccaacctccaacctcc 63
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>emb|CR860453.1| Pongo pygmaeus mRNA; cDNA DKFZp459P201 (from clone DKFZp459P201)
          Length = 4094

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 140 ctctccaacctccaacctcc 159
           ||||||||||||||||||||
Sbjct: 42  ctctccaacctccaacctcc 23
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>gb|AC026786.5| Homo sapiens chromosome 12 clone CTD-2140B24, complete sequence
          Length = 160615

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 367    acctcctttgcaaatccttc 386
              ||||||||||||||||||||
Sbjct: 118021 acctcctttgcaaatccttc 118040
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>emb|AL115780.1|CNS01COC Botrytis cinerea strain T4 cDNA library
          Length = 636

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 144 ccaacctccaacctccaacctcca 167
           |||||| |||||||||||||||||
Sbjct: 3   ccaaccgccaacctccaacctcca 26
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>emb|AL114808.1|CNS01BXC Botrytis cinerea strain T4 cDNA library
          Length = 636

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 144 ccaacctccaacctccaacctcca 167
           |||||| |||||||||||||||||
Sbjct: 3   ccaaccgccaacctccaacctcca 26
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 140     ctctccaacctccaacctcc 159
               ||||||||||||||||||||
Sbjct: 3300352 ctctccaacctccaacctcc 3300371
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>gb|AC073911.38| Homo sapiens 12 BAC RP11-386I8 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 144266

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 367  acctcctttgcaaatccttc 386
            ||||||||||||||||||||
Sbjct: 7225 acctcctttgcaaatccttc 7244
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>dbj|BS000102.1| Pan troglodytes chromosome 22 clone:RP43-107D21, map 22, complete
             sequences
          Length = 65478

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 410   ccactcttttctgctacctt 429
             ||||||||||||||||||||
Sbjct: 15897 ccactcttttctgctacctt 15916
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>emb|AL603926.6| Human DNA sequence from clone RP11-356L9 on chromosome 22, complete
             sequence
          Length = 180455

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   acctcctttgcaaatccttc 386
             ||||||||||||||||||||
Sbjct: 21224 acctcctttgcaaatccttc 21243
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>dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, section 37/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 410   ccactcttttctgctacctt 429
             ||||||||||||||||||||
Sbjct: 51338 ccactcttttctgctacctt 51357
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>gb|AC102900.12| Mus musculus chromosome 1, clone RP24-315J13, complete sequence
          Length = 192545

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   cccaactcccaagctctcca 146
             ||||||||||||||||||||
Sbjct: 91293 cccaactcccaagctctcca 91312
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 140     ctctccaacctccaacctcc 159
               ||||||||||||||||||||
Sbjct: 3309065 ctctccaacctccaacctcc 3309084
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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 143     tccaacctccaacctccaac 162
               ||||||||||||||||||||
Sbjct: 3310319 tccaacctccaacctccaac 3310338
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>gb|AC000123.1|HSAC000123 Human Cosmid g0771a106, complete sequence
          Length = 42879

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 140  ctctccaacctccaacctcc 159
            ||||||||||||||||||||
Sbjct: 7313 ctctccaacctccaacctcc 7332
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>gb|U56090.1|NCU56090 Neurospora crassa G protein alpha subunit (gna-1) gene, complete cds
          Length = 5584

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 145  caacctccaacctccaacct 164
            ||||||||||||||||||||
Sbjct: 5390 caacctccaacctccaacct 5371
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>dbj|AP001341.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B266G18,
              LL56-APP region, complete sequence
          Length = 122318

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 410    ccactcttttctgctacctt 429
              ||||||||||||||||||||
Sbjct: 110081 ccactcttttctgctacctt 110100


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,054,214
Number of Sequences: 3902068
Number of extensions: 5054214
Number of successful extensions: 75894
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75529
Number of HSP's gapped (non-prelim): 351
length of query: 487
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 465
effective length of database: 17,147,199,772
effective search space: 7973447893980
effective search space used: 7973447893980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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