ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl01h07 |
|---|---|
| Clone Library Name | barley_pub |
>BGAL_MALDO (P48981) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase) Length = 731 Score = 138 bits (348), Expect = 6e-33 Identities = 57/85 (67%), Positives = 73/85 (85%) Frame = +1 Query: 199 NVSYDHRAVRIGGQRRMLVSAGVHYPRATPEMWPSIIAKCKEGGADVIETYVFWNGHEPA 378 +VSYDH+A+ I GQ+R+L+S +HYPR+TPEMWP +I K K+GG DVI+TYVFWNGHEP+ Sbjct: 25 SVSYDHKAIIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPS 84 Query: 379 KGQYYFEDRFDLVRFVKLVAAEGLF 453 G YYFE+R+DLV+F+KLV EGLF Sbjct: 85 PGNYYFEERYDLVKFIKLVQQEGLF 109
>BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase) Length = 835 Score = 135 bits (340), Expect = 5e-32 Identities = 54/85 (63%), Positives = 73/85 (85%) Frame = +1 Query: 199 NVSYDHRAVRIGGQRRMLVSAGVHYPRATPEMWPSIIAKCKEGGADVIETYVFWNGHEPA 378 +VSYDH+A+ + GQR++L+S +HYPR+TPEMWP +I K KEGG DVI+TYVFWNGHEP Sbjct: 23 SVSYDHKAIIVNGQRKILISGSIHYPRSTPEMWPDLIQKAKEGGVDVIQTYVFWNGHEPE 82 Query: 379 KGQYYFEDRFDLVRFVKLVAAEGLF 453 +G+YYFE+R+DLV+F+K+V GL+ Sbjct: 83 EGKYYFEERYDLVKFIKVVQEAGLY 107
>BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)| Length = 832 Score = 132 bits (333), Expect = 3e-31 Identities = 56/85 (65%), Positives = 71/85 (83%) Frame = +1 Query: 199 NVSYDHRAVRIGGQRRMLVSAGVHYPRATPEMWPSIIAKCKEGGADVIETYVFWNGHEPA 378 +V+YDH++V I GQRR+L+S +HYPR+TPEMWP +I K K+GG DVI+TYVFWNGHEP+ Sbjct: 26 SVTYDHKSVIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPS 85 Query: 379 KGQYYFEDRFDLVRFVKLVAAEGLF 453 GQYYF R+DLVRF+KLV GL+ Sbjct: 86 PGQYYFGGRYDLVRFLKLVKQAGLY 110
>BGAL_DIACA (Q00662) Putative beta-galactosidase precursor (EC 3.2.1.23)| (Lactase) (SR12 protein) Length = 731 Score = 128 bits (322), Expect = 6e-30 Identities = 54/85 (63%), Positives = 70/85 (82%) Frame = +1 Query: 199 NVSYDHRAVRIGGQRRMLVSAGVHYPRATPEMWPSIIAKCKEGGADVIETYVFWNGHEPA 378 NV YD+RA++I QRR+L+S +HYPR+TPEMWP II K K+ DVI+TYVFWNGHEP+ Sbjct: 30 NVWYDYRAIKINDQRRILLSGSIHYPRSTPEMWPDIIEKAKDSQLDVIQTYVFWNGHEPS 89 Query: 379 KGQYYFEDRFDLVRFVKLVAAEGLF 453 +G+YYFE R+DLV+F+KL+ GLF Sbjct: 90 EGKYYFEGRYDLVKFIKLIHQAGLF 114
>BGAL_BRAOL (P49676) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)| Length = 828 Score = 115 bits (287), Expect = 7e-26 Identities = 48/84 (57%), Positives = 64/84 (76%) Frame = +1 Query: 202 VSYDHRAVRIGGQRRMLVSAGVHYPRATPEMWPSIIAKCKEGGADVIETYVFWNGHEPAK 381 VS+D RA+ I GQRR+L+S +HYPR+T +MWP +I+K K+GG D IETYVFWN HEP++ Sbjct: 27 VSHDERAITIDGQRRILLSGSIHYPRSTSDMWPDLISKAKDGGLDTIETYVFWNAHEPSR 86 Query: 382 GQYYFEDRFDLVRFVKLVAAEGLF 453 QY F DLVRF+K + + GL+ Sbjct: 87 RQYDFSGNLDLVRFIKTIQSAGLY 110
>BGAL_CANFA (Q9TRY9) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) Length = 668 Score = 65.5 bits (158), Expect = 6e-11 Identities = 34/95 (35%), Positives = 42/95 (44%) Frame = +1 Query: 166 RGTDGPYFEPFNVSYDHRAVRIGGQRRMLVSAGVHYPRATPEMWPSIIAKCKEGGADVIE 345 RG F + Y H GQ +S +HY R W + K K G + I+ Sbjct: 23 RGLRNASQRTFTIDYSHNRFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQ 82 Query: 346 TYVFWNGHEPAKGQYYFEDRFDLVRFVKLVAAEGL 450 TYV WN HEP GQY F D+ F+KL GL Sbjct: 83 TYVPWNFHEPQPGQYQFSGEQDVEYFIKLAHELGL 117
>BGAL_FELCA (O19015) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) Length = 669 Score = 63.9 bits (154), Expect = 2e-10 Identities = 34/95 (35%), Positives = 42/95 (44%) Frame = +1 Query: 166 RGTDGPYFEPFNVSYDHRAVRIGGQRRMLVSAGVHYPRATPEMWPSIIAKCKEGGADVIE 345 RG F + Y H GQ +S +HY R W + K K G + I+ Sbjct: 23 RGLRNASQRTFKIDYGHNRFLKDGQPFRYISGSIHYFRVPRFYWKDRLLKMKMAGLNAIQ 82 Query: 346 TYVFWNGHEPAKGQYYFEDRFDLVRFVKLVAAEGL 450 TYV WN HEP GQY F D+ F+KL GL Sbjct: 83 TYVPWNFHEPQPGQYQFSGEHDVEYFLKLAHELGL 117
>BGAL_HUMAN (P16278) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) Length = 677 Score = 60.5 bits (145), Expect = 2e-09 Identities = 30/85 (35%), Positives = 41/85 (48%) Frame = +1 Query: 196 FNVSYDHRAVRIGGQRRMLVSAGVHYPRATPEMWPSIIAKCKEGGADVIETYVFWNGHEP 375 F + Y + GQ +S +HY R W + K K G + I+TYV WN HEP Sbjct: 32 FEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEP 91 Query: 376 AKGQYYFEDRFDLVRFVKLVAAEGL 450 GQY F + D+ F++L GL Sbjct: 92 WPGQYQFSEDHDVEYFLRLAHELGL 116
>BGAL_MACFA (Q60HF6) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) Length = 682 Score = 60.1 bits (144), Expect = 3e-09 Identities = 30/85 (35%), Positives = 41/85 (48%) Frame = +1 Query: 196 FNVSYDHRAVRIGGQRRMLVSAGVHYPRATPEMWPSIIAKCKEGGADVIETYVFWNGHEP 375 F ++Y GQ +S +HY R W + K K G + I+TYV WN HEP Sbjct: 32 FEIAYSQDRFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNTIQTYVPWNFHEP 91 Query: 376 AKGQYYFEDRFDLVRFVKLVAAEGL 450 GQY F + D+ F++L GL Sbjct: 92 WPGQYQFSEDHDVEYFLRLAHELGL 116
>BGAL_XANMN (P48982) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)| Length = 598 Score = 59.7 bits (143), Expect = 3e-09 Identities = 28/72 (38%), Positives = 40/72 (55%) Frame = +1 Query: 235 GQRRMLVSAGVHYPRATPEMWPSIIAKCKEGGADVIETYVFWNGHEPAKGQYYFEDRFDL 414 G+ L+S +H+ R W + K + G + +ETYVFWN EP +GQ+ F D+ Sbjct: 41 GKPYQLLSGAIHFQRIPRAYWKDRLQKARALGLNTVETYVFWNLVEPQQGQFDFSGNNDV 100 Query: 415 VRFVKLVAAEGL 450 FVK AA+GL Sbjct: 101 AAFVKEAAAQGL 112
>BGAL_MOUSE (P23780) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) Length = 647 Score = 54.7 bits (130), Expect = 1e-07 Identities = 29/85 (34%), Positives = 38/85 (44%) Frame = +1 Query: 196 FNVSYDHRAVRIGGQRRMLVSAGVHYPRATPEMWPSIIAKCKEGGADVIETYVFWNGHEP 375 F + Y GQ +S +HY R W + K K G + I+ YV WN HEP Sbjct: 33 FKLDYSRDRFLKDGQPFRYISGSIHYFRIPRFYWEDRLLKMKMAGLNAIQMYVPWNFHEP 92 Query: 376 AKGQYYFEDRFDLVRFVKLVAAEGL 450 GQY F D+ F++L GL Sbjct: 93 QPGQYEFSGDRDVEHFIQLAHELGL 117
>BGAL_ASPNG (P29853) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)| (Tilactase) (Lactase-N) Length = 1006 Score = 37.7 bits (86), Expect = 0.014 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Frame = +1 Query: 202 VSYDHRAVRIGGQRRMLVSAGVH-YPRATPEMWPSIIAKCKEGGADVIETYVFWNGHEPA 378 V++D +++ I G+R M+ S H + E+ I K K G + + YV W E Sbjct: 46 VTWDDKSLFINGERIMIFSGEFHPFRLPVKELQLDIFQKVKALGFNCVSFYVDWALVEGK 105 Query: 379 KGQYYFEDRFDLVRFVKLVAAEGLF 453 G+Y + FDL F + G++ Sbjct: 106 PGEYRADGIFDLEPFFDAASEAGIY 130
>SYV_CORDI (Q6NFV0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 919 Score = 29.6 bits (65), Expect = 3.8 Identities = 19/53 (35%), Positives = 25/53 (47%) Frame = +1 Query: 106 VAGYFTASALAAGELSQVVGRGTDGPYFEPFNVSYDHRAVRIGGQRRMLVSAG 264 VA LA +++G+GTDG PFN + H VR R+M S G Sbjct: 516 VARMMMFGTLAGETTPEILGQGTDGRPQIPFNDLFLHGLVRDEQGRKMSKSLG 568
>TPN50_TREPA (P38369) Outer membrane protein tpn50 precursor (Antigen tpp57)| Length = 417 Score = 29.6 bits (65), Expect = 3.8 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 6/94 (6%) Frame = +1 Query: 163 GRGTDGPYFEPFNVSYDHRA-VRIGGQRRMLVSAGVHYPRATPEMWPSIIAKCKEGGADV 339 G G P+ PF VSY +R V+ G +R ++A +P+ + KEG V Sbjct: 161 GFGIQTPFIVPFTVSYTYRGEVQRGSRRYHHITAAYSMSYESPKRTHGVQRNAKEGMYPV 220 Query: 340 IETYV-----FWNGHEPAKGQYYFEDRFDLVRFV 426 T V +W+ +Y +D F ++ ++ Sbjct: 221 RTTGVSKQNLYWDNELGNIAEY--DDEFRILLYL 252
>SYV_COREF (Q8FN65) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 903 Score = 28.9 bits (63), Expect = 6.4 Identities = 19/53 (35%), Positives = 24/53 (45%) Frame = +1 Query: 106 VAGYFTASALAAGELSQVVGRGTDGPYFEPFNVSYDHRAVRIGGQRRMLVSAG 264 VA AA E +++G GTDG PF + H VR R+M S G Sbjct: 506 VARMMMFGTFAAKETPELLGEGTDGRPQVPFTDLFLHGLVRDEHGRKMSKSLG 558
>TF2B_RAT (P62916) Transcription initiation factor IIB (General transcription| factor TFIIB) (RNA polymerase II alpha initiation factor) Length = 316 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +1 Query: 133 LAAGELSQVVGRGTDGPYFEPF-NVSYDHRAVRIGGQRRML 252 L+ G+LS ++G+GT F+ F N Y +R R M+ Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMM 115
>TF2B_PONPY (Q5R886) Transcription initiation factor IIB (General transcription| factor TFIIB) Length = 316 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +1 Query: 133 LAAGELSQVVGRGTDGPYFEPF-NVSYDHRAVRIGGQRRML 252 L+ G+LS ++G+GT F+ F N Y +R R M+ Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMM 115
>TF2B_MOUSE (P62915) Transcription initiation factor IIB (General transcription| factor TFIIB) (RNA polymerase II alpha initiation factor) Length = 316 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +1 Query: 133 LAAGELSQVVGRGTDGPYFEPF-NVSYDHRAVRIGGQRRML 252 L+ G+LS ++G+GT F+ F N Y +R R M+ Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMM 115
>TF2B_HUMAN (Q00403) Transcription initiation factor IIB (General transcription| factor TFIIB) (S300-II) Length = 316 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +1 Query: 133 LAAGELSQVVGRGTDGPYFEPF-NVSYDHRAVRIGGQRRML 252 L+ G+LS ++G+GT F+ F N Y +R R M+ Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMM 115 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,887,024 Number of Sequences: 219361 Number of extensions: 943412 Number of successful extensions: 2707 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2674 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2707 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
