ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl01h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
2dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
3dbj|AK100674.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
4gb|AC134933.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.38
5gb|AC128668.4| Mus musculus BAC clone RP24-81D14 from chromosome... 44 0.38
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
7gb|AY108661.1| Zea mays PCO103847 mRNA sequence 44 0.38
8gb|AC125358.4| Mus musculus BAC clone RP23-256E3 from 8, complet... 44 0.38
9gb|AC139600.16| Medicago truncatula clone mth2-20m4, complete se... 42 1.5
10emb|CR382323.8| Zebrafish DNA sequence from clone DKEY-226M8 in ... 42 1.5
11gb|AC113350.2| Homo sapiens chromosome 5 clone CTD-2548J21, comp... 42 1.5
12ref|NM_016799.1| Mus musculus serine/arginine repetitive matrix ... 42 1.5
13dbj|AK028412.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 42 1.5
14gb|BC094322.1| Mus musculus serine/arginine repetitive matrix 1,... 42 1.5
15gb|BC079542.1| Mus musculus serine/arginine repetitive matrix 1,... 42 1.5
16gb|AF062655.1|AF062655 Mus musculus plenty-of-prolines-101 mRNA,... 42 1.5
17gb|AC155348.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 42 1.5
18emb|AL627078.10| Mouse DNA sequence from clone RP23-138K13 on ch... 42 1.5
19gb|AC161194.14| Mus musculus chromosome 15, clone RP23-345C13, c... 40 5.9
20gb|AC153148.4| Mus musculus BAC clone RP23-189N11 from chromosom... 40 5.9
21ref|NM_206840.1| Homo sapiens nuclear VCP-like (NVL), transcript... 40 5.9
22ref|NM_002533.2| Homo sapiens nuclear VCP-like (NVL), transcript... 40 5.9
23ref|XM_514229.1| PREDICTED: Pan troglodytes nuclear VCP-like (LO... 40 5.9
24gb|AC164292.4| Mus musculus BAC clone RP24-177C20 from chromosom... 40 5.9
25gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 5.9
26gb|AC115629.3| Mus musculus BAC clone RP23-74J16 from chromosome... 40 5.9
27gb|AC134844.3| Mus musculus BAC clone RP24-398A1 from chromosome... 40 5.9
28emb|CR974489.8| Mouse DNA sequence from clone RP23-78L13 on chro... 40 5.9
29gb|AC008020.37| Mus musculus strain 129S6/SvEvTac chromosome 16 ... 40 5.9
30gb|AC122910.5| Mus musculus BAC clone RP23-54P3 from chromosome ... 40 5.9
31gb|AC125353.2| Mus musculus BAC clone RP23-455B17 from 6, comple... 40 5.9
32gb|BC012105.1| Homo sapiens nuclear VCP-like, mRNA (cDNA clone M... 40 5.9
33gb|AC079817.41| Mus musculus strain C57BL/6J clone rp23-247i11 m... 40 5.9
34emb|BX842649.1| Bdellovibrio bacteriovorus complete genome, stra... 40 5.9
35emb|AL669897.15| Mouse DNA sequence from clone RP23-78H4 on chro... 40 5.9
36emb|BX927184.5| Zebrafish DNA sequence from clone DKEY-125I20 in... 40 5.9
37gb|AC093432.2| Homo sapiens chromosome 1 clone RP11-136D19, comp... 40 5.9
38gb|AC092809.2| Homo sapiens chromosome 1 clone RP11-365O16, comp... 40 5.9
39dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
40gb|AC079831.24| Mus musculus strain C57BL/6J chromosome 16 clone... 40 5.9
41dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
42emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 5.9
43gb|AC145363.4| Dasypus novemcinctus clone VMRC5-356N21, complete... 40 5.9
44emb|CR974457.17| Mouse DNA sequence from clone RP23-319E15 on ch... 40 5.9
45emb|AL732627.14| Mouse DNA sequence from clone RP23-183L6 on chr... 40 5.9
46gb|AF050157.1|MMHC135G15 Mus musculus major histocompatibility l... 40 5.9
47gb|U78772.1|HSU78772 Homo sapiens nuclear VCP-like protein NVLp.... 40 5.9
48gb|U68140.1|HSU68140 Homo sapiens nuclear VCP-like protein NVLp.... 40 5.9
49emb|AL591606.4| Mouse DNA sequence from clone RP23-272O14 on chr... 40 5.9
50emb|AL731674.9| Mouse DNA sequence from clone RP23-340M18 on chr... 40 5.9
51emb|AL713861.10| Mouse DNA sequence from clone RP23-367H15 on ch... 40 5.9
52emb|AL663095.14| Mouse DNA sequence from clone RP23-211M16 on ch... 40 5.9 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                         
Query: 132      cgtacggcgcggccgcccgccgtcggatctgcgccggcgac 172
                ||||||||||  | ||| |||||||||||||||||||||||
Sbjct: 18124162 cgtacggcgcaccggccggccgtcggatctgcgccggcgac 18124122
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>dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0026C08
          Length = 155316

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                       
Query: 132    cgtacggcgcggccgcccgccgtcggatctgcgccggcgac 172
              ||||||||||  | ||| |||||||||||||||||||||||
Sbjct: 117284 cgtacggcgcaccggccggccgtcggatctgcgccggcgac 117244
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>dbj|AK100674.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113B13, full
           insert sequence
          Length = 2837

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 132 cgtacggcgcggccgcccgccgtcggatctgcgccggcgac 172
           ||||||||||  | ||| |||||||||||||||||||||||
Sbjct: 129 cgtacggcgcaccggccggccgtcggatctgcgccggcgac 169
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>gb|AC134933.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0579A05,
             complete sequence
          Length = 107407

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 186   cgaggagggggaggtggcggcg 207
             ||||||||||||||||||||||
Sbjct: 60738 cgaggagggggaggtggcggcg 60717
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>gb|AC128668.4| Mus musculus BAC clone RP24-81D14 from chromosome 8, complete sequence
          Length = 211075

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 367   aagtcttctttcttccttttgc 388
             ||||||||||||||||||||||
Sbjct: 23570 aagtcttctttcttccttttgc 23549
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 186      cgaggagggggaggtggcggcg 207
                ||||||||||||||||||||||
Sbjct: 20327148 cgaggagggggaggtggcggcg 20327127
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>gb|AY108661.1| Zea mays PCO103847 mRNA sequence
          Length = 423

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 155 cggatctgcgccggcgactcgcccgg 180
           |||||||||||||||||| |||||||
Sbjct: 118 cggatctgcgccggcgacgcgcccgg 143
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>gb|AC125358.4| Mus musculus BAC clone RP23-256E3 from 8, complete sequence
          Length = 177236

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 367   aagtcttctttcttccttttgc 388
             ||||||||||||||||||||||
Sbjct: 64479 aagtcttctttcttccttttgc 64500
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>gb|AC139600.16| Medicago truncatula clone mth2-20m4, complete sequence
          Length = 124732

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 358   atcagtttgaagtcttctttc 378
             |||||||||||||||||||||
Sbjct: 40935 atcagtttgaagtcttctttc 40915
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>emb|CR382323.8| Zebrafish DNA sequence from clone DKEY-226M8 in linkage group 5,
             complete sequence
          Length = 143411

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 269   acttaattgtgagatagagtg 289
             |||||||||||||||||||||
Sbjct: 24674 acttaattgtgagatagagtg 24654
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>gb|AC113350.2| Homo sapiens chromosome 5 clone CTD-2548J21, complete sequence
          Length = 80117

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 364   ttgaagtcttctttcttccttttgc 388
             ||||||| |||||||||||||||||
Sbjct: 25825 ttgaagtattctttcttccttttgc 25801
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>ref|NM_016799.1| Mus musculus serine/arginine repetitive matrix 1 (Srrm1), mRNA
          Length = 2957

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 187  gaggagggggaggtggcggcg 207
            |||||||||||||||||||||
Sbjct: 1776 gaggagggggaggtggcggcg 1756
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>dbj|AK028412.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
            library, clone:4022401C19 product:serine/arginine
            repetitive matrix 1, full insert sequence
          Length = 3644

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 187  gaggagggggaggtggcggcg 207
            |||||||||||||||||||||
Sbjct: 1768 gaggagggggaggtggcggcg 1748
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>gb|BC094322.1| Mus musculus serine/arginine repetitive matrix 1, mRNA (cDNA clone
            MGC:106668 IMAGE:6401250), complete cds
          Length = 3112

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 187  gaggagggggaggtggcggcg 207
            |||||||||||||||||||||
Sbjct: 1765 gaggagggggaggtggcggcg 1745
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>gb|BC079542.1| Mus musculus serine/arginine repetitive matrix 1, mRNA (cDNA clone
            IMAGE:6825296), with apparent retained intron
          Length = 4562

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 187  gaggagggggaggtggcggcg 207
            |||||||||||||||||||||
Sbjct: 3817 gaggagggggaggtggcggcg 3797
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>gb|AF062655.1|AF062655 Mus musculus plenty-of-prolines-101 mRNA, complete cds
          Length = 2957

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 187  gaggagggggaggtggcggcg 207
            |||||||||||||||||||||
Sbjct: 1776 gaggagggggaggtggcggcg 1756
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>gb|AC155348.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
             clone KBrH097M21, complete sequence
          Length = 131063

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 358   atcagtttgaagtcttctttc 378
             |||||||||||||||||||||
Sbjct: 29087 atcagtttgaagtcttctttc 29107
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>emb|AL627078.10| Mouse DNA sequence from clone RP23-138K13 on chromosome 4, complete
             sequence
          Length = 90129

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 187   gaggagggggaggtggcggcg 207
             |||||||||||||||||||||
Sbjct: 76692 gaggagggggaggtggcggcg 76712
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>gb|AC161194.14| Mus musculus chromosome 15, clone RP23-345C13, complete sequence
          Length = 193998

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 405   tctctggtgggctacaggagaggt 428
             |||||||||||||| |||||||||
Sbjct: 50100 tctctggtgggctagaggagaggt 50123
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>gb|AC153148.4| Mus musculus BAC clone RP23-189N11 from chromosome 5, complete sequence
          Length = 229020

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 372    ttctttcttccttttgctac 391
              ||||||||||||||||||||
Sbjct: 207579 ttctttcttccttttgctac 207560
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>ref|NM_206840.1| Homo sapiens nuclear VCP-like (NVL), transcript variant 2, mRNA
          Length = 2847

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 370 tcttctttcttccttttgct 389
           ||||||||||||||||||||
Sbjct: 670 tcttctttcttccttttgct 651
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>ref|NM_002533.2| Homo sapiens nuclear VCP-like (NVL), transcript variant 1, mRNA
          Length = 2921

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 370 tcttctttcttccttttgct 389
           ||||||||||||||||||||
Sbjct: 744 tcttctttcttccttttgct 725
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>ref|XM_514229.1| PREDICTED: Pan troglodytes nuclear VCP-like (LOC457771), mRNA
          Length = 4086

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 370  tcttctttcttccttttgct 389
            ||||||||||||||||||||
Sbjct: 1979 tcttctttcttccttttgct 1960
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>gb|AC164292.4| Mus musculus BAC clone RP24-177C20 from chromosome 3, complete sequence
          Length = 185822

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 409    tggtgggctacaggagaggt 428
              ||||||||||||||||||||
Sbjct: 105504 tggtgggctacaggagaggt 105523
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 177     ccggccgcccgaggaggggg 196
               ||||||||||||||||||||
Sbjct: 2756217 ccggccgcccgaggaggggg 2756198
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>gb|AC115629.3| Mus musculus BAC clone RP23-74J16 from chromosome 5, complete sequence
          Length = 242126

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 372    ttctttcttccttttgctac 391
              ||||||||||||||||||||
Sbjct: 131838 ttctttcttccttttgctac 131819
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>gb|AC134844.3| Mus musculus BAC clone RP24-398A1 from chromosome 7, complete sequence
          Length = 141942

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 409   tggtgggctacaggagaggtggaa 432
             |||||||||| |||||||||||||
Sbjct: 92391 tggtgggctagaggagaggtggaa 92414
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>emb|CR974489.8| Mouse DNA sequence from clone RP23-78L13 on chromosome 12, complete
              sequence
          Length = 232346

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 409    tggtgggctacaggagaggt 428
              ||||||||||||||||||||
Sbjct: 223564 tggtgggctacaggagaggt 223545
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>gb|AC008020.37| Mus musculus strain 129S6/SvEvTac chromosome 16 clone rp21-598k13,
              complete sequence
          Length = 184044

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 367    aagtcttctttcttccttttgcta 390
              ||||||||||||||||||| ||||
Sbjct: 120005 aagtcttctttcttcctttagcta 119982
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>gb|AC122910.5| Mus musculus BAC clone RP23-54P3 from chromosome 6, complete sequence
          Length = 221390

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 409   tggtgggctacaggagaggt 428
             ||||||||||||||||||||
Sbjct: 55081 tggtgggctacaggagaggt 55100
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>gb|AC125353.2| Mus musculus BAC clone RP23-455B17 from 6, complete sequence
          Length = 171963

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 409  tggtgggctacaggagaggt 428
            ||||||||||||||||||||
Sbjct: 3856 tggtgggctacaggagaggt 3837
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>gb|BC012105.1| Homo sapiens nuclear VCP-like, mRNA (cDNA clone MGC:20090
           IMAGE:4636004), complete cds
          Length = 2496

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 370 tcttctttcttccttttgct 389
           ||||||||||||||||||||
Sbjct: 350 tcttctttcttccttttgct 331
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>gb|AC079817.41| Mus musculus strain C57BL/6J clone rp23-247i11 map 16, complete
             sequence
          Length = 197346

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 367   aagtcttctttcttccttttgcta 390
             ||||||||||||||||||| ||||
Sbjct: 13246 aagtcttctttcttcctttagcta 13223
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>emb|BX842649.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 4/11
          Length = 349697

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 354    agtgatcagtttgaagtcttcttt 377
              ||||| ||||||||||||||||||
Sbjct: 142702 agtgagcagtttgaagtcttcttt 142725
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>emb|AL669897.15| Mouse DNA sequence from clone RP23-78H4 on chromosome 11 Contains the
            Ywhae gene for tyrosine 3-monooxygenase/tryptophan
            5-monooxygenase activation protein epsilon polypeptide,
            the Doc2b gene for double C2 beta, a novl gene, the 3'
            end of the gene for a novel protein similar to rat
            rabphilin-3a related protein and two CpG islands,
            complete sequence
          Length = 178980

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 409  tggtgggctacaggagaggt 428
            ||||||||||||||||||||
Sbjct: 7700 tggtgggctacaggagaggt 7719
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>emb|BX927184.5| Zebrafish DNA sequence from clone DKEY-125I20 in linkage group 5,
             complete sequence
          Length = 160345

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   acttaattgtgagatagagt 288
             ||||||||||||||||||||
Sbjct: 14742 acttaattgtgagatagagt 14761
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>gb|AC093432.2| Homo sapiens chromosome 1 clone RP11-136D19, complete sequence
          Length = 174520

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 370   tcttctttcttccttttgct 389
             ||||||||||||||||||||
Sbjct: 45775 tcttctttcttccttttgct 45756
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>gb|AC092809.2| Homo sapiens chromosome 1 clone RP11-365O16, complete sequence
          Length = 197621

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 370    tcttctttcttccttttgct 389
              ||||||||||||||||||||
Sbjct: 132244 tcttctttcttccttttgct 132263
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 186      cgaggagggggaggtggcgg 205
                ||||||||||||||||||||
Sbjct: 24637410 cgaggagggggaggtggcgg 24637391
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>gb|AC079831.24| Mus musculus strain C57BL/6J chromosome 16 clone rp23-374p12, complete
             sequence
          Length = 147412

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 367   aagtcttctttcttccttttgcta 390
             ||||||||||||||||||| ||||
Sbjct: 28268 aagtcttctttcttcctttagcta 28291
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>dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0040H10
          Length = 173301

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 186    cgaggagggggaggtggcgg 205
              ||||||||||||||||||||
Sbjct: 120603 cgaggagggggaggtggcgg 120584
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>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib
          Length = 2013089

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 370     tcttctttcttccttttgct 389
               ||||||||||||||||||||
Sbjct: 1126037 tcttctttcttccttttgct 1126018
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>gb|AC145363.4| Dasypus novemcinctus clone VMRC5-356N21, complete sequence
          Length = 108046

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   agtcttctttcttccttttg 387
             ||||||||||||||||||||
Sbjct: 57812 agtcttctttcttccttttg 57793
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>emb|CR974457.17| Mouse DNA sequence from clone RP23-319E15 on chromosome 17, complete
             sequence
          Length = 124639

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    ccgtccctctggtctacctc 31
             ||||||||||||||||||||
Sbjct: 53628 ccgtccctctggtctacctc 53609
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>emb|AL732627.14| Mouse DNA sequence from clone RP23-183L6 on chromosome 4, complete
             sequence
          Length = 202365

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 409   tggtgggctacaggagaggt 428
             ||||||||||||||||||||
Sbjct: 69874 tggtgggctacaggagaggt 69855
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>gb|AF050157.1|MMHC135G15 Mus musculus major histocompatibility locus class II region: major
             histocompatibility protein class II alpha chain (IAalpha)
             and major histocompatibility protein class II beta chain
             (IEbeta) genes, complete cds; butyrophilin-like (NG9),
             butyrophilin-like (NG10), hypothetical protein (NG8), and
             butyrophilin-like (NG11) genes, partial cds; NG12
             pseudogene, partial sequence; and hypothetical
             butyrophilin-like protein (NG13) gene, partial cds
          Length = 245439

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    ccgtccctctggtctacctc 31
             ||||||||||||||||||||
Sbjct: 94796 ccgtccctctggtctacctc 94777
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>gb|U78772.1|HSU78772 Homo sapiens nuclear VCP-like protein NVLp.1 (NVL.1) mRNA, complete
           cds
          Length = 2801

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 370 tcttctttcttccttttgct 389
           ||||||||||||||||||||
Sbjct: 670 tcttctttcttccttttgct 651
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>gb|U68140.1|HSU68140 Homo sapiens nuclear VCP-like protein NVLp.2 (NVL.2) mRNA, complete
           cds
          Length = 2907

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 370 tcttctttcttccttttgct 389
           ||||||||||||||||||||
Sbjct: 757 tcttctttcttccttttgct 738
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>emb|AL591606.4| Mouse DNA sequence from clone RP23-272O14 on chromosome 2, complete
              sequence
          Length = 179373

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 409    tggtgggctacaggagaggt 428
              ||||||||||||||||||||
Sbjct: 133745 tggtgggctacaggagaggt 133764
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>emb|AL731674.9| Mouse DNA sequence from clone RP23-340M18 on chromosome X, complete
             sequence
          Length = 193870

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 409   tggtgggctacaggagaggt 428
             ||||||||||||||||||||
Sbjct: 12270 tggtgggctacaggagaggt 12251
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>emb|AL713861.10| Mouse DNA sequence from clone RP23-367H15 on chromosome X, complete
             sequence
          Length = 169838

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 409   tggtgggctacaggagaggt 428
             ||||||||||||||||||||
Sbjct: 55256 tggtgggctacaggagaggt 55275
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>emb|AL663095.14| Mouse DNA sequence from clone RP23-211M16 on chromosome X, complete
              sequence
          Length = 217249

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 409    tggtgggctacaggagaggt 428
              ||||||||||||||||||||
Sbjct: 197635 tggtgggctacaggagaggt 197616


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,358,690
Number of Sequences: 3902068
Number of extensions: 4358690
Number of successful extensions: 112362
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112065
Number of HSP's gapped (non-prelim): 297
length of query: 439
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 417
effective length of database: 17,147,199,772
effective search space: 7150382304924
effective search space used: 7150382304924
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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