ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl01h03 |
|---|---|
| Clone Library Name | barley_pub |
>IMB1_SCHPO (O13864) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 863 Score = 82.0 bits (201), Expect = 7e-16 Identities = 46/122 (37%), Positives = 70/122 (57%) Frame = +3 Query: 90 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 269 M+ + L SPD N+R AE ++ + +++ L+ EL+ND P R AG+ Sbjct: 1 MNAGEFLAQTLSPDANVRLNAEKQLENAARTDFAQYMVLLAQELANDNSMPYIRMAAGLA 60 Query: 270 LKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIASI 449 LKN++ A++ ARK Q W SL IK Q+K L TLGSS A Q+++Q++A IA+ Sbjct: 61 LKNAITAREEARKLEYQQLWQSLPVEIKQQVKSLALQTLGSSEHQAGQSAAQLVAAIAAY 120 Query: 450 EI 455 E+ Sbjct: 121 EL 122
>IMB1_MOUSE (P70168) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Pore targeting complex 97 kDa subunit) (PTAC97) (SCG) Length = 876 Score = 67.8 bits (164), Expect = 1e-11 Identities = 43/123 (34%), Positives = 69/123 (56%) Frame = +3 Query: 90 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 269 M++ IL SPD AA+ +++ +NLP FL+ LS L+N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 270 LKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIASI 449 +KNSL +KD K Q+W+++D + + ++K +L TLG+ ++SQ +A IA Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRPSSASQCVAGIACA 119 Query: 450 EIP 458 EIP Sbjct: 120 EIP 122
>IMB1_HUMAN (Q14974) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Importin 90) Length = 876 Score = 67.8 bits (164), Expect = 1e-11 Identities = 43/123 (34%), Positives = 69/123 (56%) Frame = +3 Query: 90 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 269 M++ IL SPD AA+ +++ +NLP FL+ LS L+N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 270 LKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIASI 449 +KNSL +KD K Q+W+++D + + ++K +L TLG+ ++SQ +A IA Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRPSSASQCVAGIACA 119 Query: 450 EIP 458 EIP Sbjct: 120 EIP 122
>IMB1_YEAST (Q06142) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 861 Score = 63.5 bits (153), Expect = 3e-10 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 1/113 (0%) Frame = +3 Query: 123 SPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGIILKNSLDAKDSA 302 SPD N+R +E +K+ N F S L ++ E R LA + LKN L +KDS Sbjct: 16 SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSV 75 Query: 303 RKELLIQQWVS-LDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIASIEIP 458 + + Q+W++ + K+QIK + L L S ++Q+IA IA IE+P Sbjct: 76 KTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELP 128
>IMB_DROME (O18388) Importin beta subunit (Karyopherin beta-4 subunit)| (Protein ketel) Length = 884 Score = 60.5 bits (145), Expect = 2e-09 Identities = 40/123 (32%), Positives = 60/123 (48%) Frame = +3 Query: 90 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 269 M + IL SPD N +A+ ++Q NLP FL +LS L N +R AG+ Sbjct: 7 MQLIAILEKTVSPDKNELLSAKNFLEQAAASNLPEFLKALSEILVNTANSAVARMAAGLQ 66 Query: 270 LKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIASI 449 LKN L +KD + +W I+ IK ++L LG+ ++Q +A +A I Sbjct: 67 LKNHLTSKDEKVSQQYQDRWHQFPSEIRELIKNNILAALGTE-NTRPSCAAQCVAYVAVI 125 Query: 450 EIP 458 E+P Sbjct: 126 ELP 128
>IMB1_RAT (P52296) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) Length = 875 Score = 57.4 bits (137), Expect = 2e-08 Identities = 40/123 (32%), Positives = 67/123 (54%) Frame = +3 Query: 90 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 269 M++ IL SPD AA+ +++ +NLP FL+ LS L+N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 270 LKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIASI 449 ++ L +KD K Q+W+++D + + ++K +L TLG+ ++SQ +A IA Sbjct: 61 IR-LLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRPSSASQCVAGIACA 118 Query: 450 EIP 458 EIP Sbjct: 119 EIP 121
>TNPO1_MOUSE (Q8BFY9) Transportin-1 (Importin beta-2) (Karyopherin beta-2)| Length = 890 Score = 43.1 bits (100), Expect = 3e-04 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 1/121 (0%) Frame = +3 Query: 87 VMDITQILLAAQSPDGNLRSAAEANIKQF-QEQNLPNFLLSLSVELSNDERPPESRRLAG 263 + I Q+L +QSPD ++ + ++Q Q + N+L+ + +L +++ P +R L+G Sbjct: 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSG 69 Query: 264 IILKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIA 443 +ILKN++ A + + + + IK L +G S R T +I IA Sbjct: 70 LILKNNVKA-----------HFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIA 118 Query: 444 S 446 S Sbjct: 119 S 119
>TNPO1_HUMAN (Q92973) Transportin-1 (Importin beta-2) (Karyopherin beta-2) (M9| region interaction protein) (MIP) Length = 890 Score = 43.1 bits (100), Expect = 3e-04 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 1/121 (0%) Frame = +3 Query: 87 VMDITQILLAAQSPDGNLRSAAEANIKQF-QEQNLPNFLLSLSVELSNDERPPESRRLAG 263 + I Q+L +QSPD ++ + ++Q Q + N+L+ + +L +++ P +R L+G Sbjct: 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSG 69 Query: 264 IILKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIA 443 +ILKN++ A + + + + IK L +G S R T +I IA Sbjct: 70 LILKNNVKA-----------HFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIA 118 Query: 444 S 446 S Sbjct: 119 S 119
>TNPO2_HUMAN (O14787) Transportin-2 (Karyopherin beta-2b)| Length = 897 Score = 38.9 bits (89), Expect = 0.007 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 1/121 (0%) Frame = +3 Query: 87 VMDITQILLAAQSPDGNLRSAAEANIKQFQE-QNLPNFLLSLSVELSNDERPPESRRLAG 263 + + Q+L +QSP+ + + +KQ + + N+L+ + L +++ P +R L+G Sbjct: 10 LQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEP--TRSLSG 67 Query: 264 IILKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIA 443 +ILKN++ A + S + IK+ L +G + R T +I IA Sbjct: 68 LILKNNVKA-----------HYQSFPPPVADFIKQECLNNIGDASSLIRATIGILITTIA 116 Query: 444 S 446 S Sbjct: 117 S 117
>TNPO2_MOUSE (Q99LG2) Transportin-2 (Karyopherin beta-2b)| Length = 887 Score = 38.9 bits (89), Expect = 0.007 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 1/121 (0%) Frame = +3 Query: 87 VMDITQILLAAQSPDGNLRSAAEANIKQFQE-QNLPNFLLSLSVELSNDERPPESRRLAG 263 + + Q+L +QSP+ + + +KQ + + N+L+ + L +++ P +R L+G Sbjct: 10 LQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEP--TRSLSG 67 Query: 264 IILKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIA 443 +ILKN++ A + S + IK+ L +G + R T +I IA Sbjct: 68 LILKNNVKA-----------HYQSFPPPVADFIKQECLNNIGDASSLIRATIGILITTIA 116 Query: 444 S 446 S Sbjct: 117 S 117
>IMB5_YEAST (P53067) Importin beta-5 subunit (Karyopherin beta-5 subunit) (114| kDa karyopherin) Length = 1004 Score = 33.9 bits (76), Expect = 0.21 Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 2/125 (1%) Frame = +3 Query: 90 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 269 MDI ++++ AQS D + R AE + Q+ + + +L+ E ESR+ A + Sbjct: 1 MDINELIIGAQSADKHTREVAETQLLQWCDSDASQVFKALANVALQHEASLESRQFALLS 60 Query: 270 LKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLL-ITLGSSVG-DARQTSSQVIAKIA 443 L+ + S E + +++ +K I+E LL + L + + +S I +I+ Sbjct: 61 LRKLITMYWSPGFE-SYRSTSNVEIDVKDFIREVLLKLCLNDNENTKIKNGASYCIVQIS 119 Query: 444 SIEIP 458 +++ P Sbjct: 120 AVDFP 124
>IPO11_MOUSE (Q8K2V6) Importin-11 (Imp11) (Ran-binding protein 11) (RanBP11)| Length = 975 Score = 33.1 bits (74), Expect = 0.36 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 5/128 (3%) Frame = +3 Query: 96 ITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGIILK 275 + Q+L A S D + AE +KQ++ Q P F L +N R LA + K Sbjct: 10 VLQVLTQATSQDTAVLKPAEEQLKQWETQ--PGFYSVLLNIFTNHTLDINVRWLAVLYFK 67 Query: 276 NSLDAKDSARKELLIQQWV-----SLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKI 440 + +D + W +L KS ++ L+ + + +IAK+ Sbjct: 68 HGID-----------RYWRRVAPHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKV 116 Query: 441 ASIEIPRR 464 A ++ PR+ Sbjct: 117 ARLDCPRQ 124
>PTPRV_RAT (Q64612) Receptor-type tyrosine-protein phosphatase V precursor (EC| 3.1.3.48) (Embryonic stem cell protein-tyrosine phosphatase) (ES cell phosphatase) (Osteotesticular protein-tyrosine phosphatase) (OST-PTP) Length = 1711 Score = 32.0 bits (71), Expect = 0.81 Identities = 19/40 (47%), Positives = 23/40 (57%) Frame = -2 Query: 228 HSITPPTRIGGSWEDSAPGTA*CWLLLLSEGYHLETEQLA 109 HS P R+ SW D APG + LLL YHLE++ LA Sbjct: 137 HSAGSPARLEASWSD-APGDQDSYQLLL---YHLESQTLA 172
>DPO4_THETN (P58965) DNA polymerase IV (EC 2.7.7.7) (Pol IV)| Length = 384 Score = 32.0 bits (71), Expect = 0.81 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 10/103 (9%) Frame = +3 Query: 159 NIKQFQEQNLPNFLLSLSVELSN-----DERPPESRRLAGIILKNSLDAKDSARKELLIQ 323 ++ + ++NL VE+ N DERP E+ R I K KD+ KELLIQ Sbjct: 199 DLLKLPQENLIELFGKTGVEIYNRIRGIDERPVETMREIKSIGKEKTLEKDTKNKELLIQ 258 Query: 324 QWVSLDHSIKSQ-IKESL---LITLGSSVGD-ARQTSSQVIAK 437 + + IKE L +T+ D A T S+ + K Sbjct: 259 HLKEFSEIVSEELIKERLYCRTVTVKIKTADFAVHTKSKTVDK 301
>IPO11_HUMAN (Q9UI26) Importin-11 (Imp11) (Ran-binding protein 11) (RanBP11)| Length = 975 Score = 32.0 bits (71), Expect = 0.81 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 5/128 (3%) Frame = +3 Query: 96 ITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGIILK 275 + Q+L A S D + AE +KQ++ Q P F L +N R LA + K Sbjct: 10 VLQVLTQATSQDTAVLKPAEEQLKQWETQ--PGFYSVLLNIFTNHTLDINVRWLAVLYFK 67 Query: 276 NSLDAKDSARKELLIQQWV-----SLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKI 440 + +D + W +L K+ ++ L+ + + +IAK+ Sbjct: 68 HGID-----------RYWRRVAPHALSEEEKTTLRAGLITNFNEPINQIATQIAVLIAKV 116 Query: 441 ASIEIPRR 464 A ++ PR+ Sbjct: 117 ARLDCPRQ 124
>IMB4_YEAST (P40069) Importin beta-4 subunit (Karyopherin beta-4 subunit)| (Ran-binding protein YRB4) Length = 1113 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Frame = +3 Query: 306 KELLIQQWVSLDHSIKSQIKESLLITLGSSVGD-ARQTSSQVIAKIASIEI 455 ++L+ + W ++D S ++ IK SLL T S + R ++++VIA I + E+ Sbjct: 64 RKLVSKHWNAIDESTRASIKTSLLQTAFSEPKENVRHSNARVIASIGTEEL 114
>DTD_AQUAE (O66742) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)| Length = 148 Score = 30.4 bits (67), Expect = 2.3 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = +3 Query: 321 QQWVSLDHSIKSQIKESLLITLGSSVGDARQTSSQVIAKIASIEI 455 + WV +D + I E L + LG GD + +++ KI ++ I Sbjct: 10 KSWVEVDGKVVGSINEGLNVFLGVRKGDTEEDIEKLVNKILNLRI 54
>IMB_XENLA (P52297) Importin beta subunit (Karyopherin beta subunit) (P97)| (Importin 90) (Fragments) Length = 260 Score = 30.0 bits (66), Expect = 3.1 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 1/113 (0%) Frame = +3 Query: 93 DITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGIIL 272 ++ IL SPD E Q +NLP F++ LS L+N P S+ Sbjct: 1 ELVTILEKTVSPDRRXLKFLE----QAAVENLPTFVVELSKVLAN---PANSQ------- 46 Query: 273 KNSLDAKDSARKELLIQQWVSLDHSIKSQI-KESLLITLGSSVGDARQTSSQV 428 ARK Q+W+++D + + +I KES L + D + S+ V Sbjct: 47 --------VARKAQYQQRWLAIDANARGEIKKESXLEAIDYIXQDIEEPSNNV 91
>K1949_PIG (Q767M0) Protein KIAA1949 homolog| Length = 618 Score = 29.6 bits (65), Expect = 4.0 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -3 Query: 128 WRLSS*QNLSDIHDCCTCPEERICRGMLPRSLARLPASQT 9 WRLSS + D + C EER GM+P + P + T Sbjct: 267 WRLSSGEERKDCLEECGRKEERTLPGMVPEDITGSPETLT 306
>HEATR_HUMAN (Q9H583) HEAT repeat-containing protein 1 (Protein BAP28)| Length = 2144 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +3 Query: 345 SIKSQIKESLLITLGSSVGDARQTSSQVIAKIASIEIP 458 SI S + SLLI LGS V + R+ + Q + ++ + P Sbjct: 914 SISSPVVTSLLINLGSPVKEVRRAAIQCLQALSGVASP 951
>DYHA_CHLRE (Q39610) Dynein alpha chain, flagellar outer arm (DHC alpha)| Length = 4499 Score = 28.9 bits (63), Expect = 6.8 Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 18/109 (16%) Frame = +3 Query: 192 NFLLSLSVELSNDERPPESR-----------------RLAGIILKNSLDAKDSARKELLI 320 NF L L +LSN PPE + +L +++ + + +L+I Sbjct: 3442 NFRLFLHTKLSNPHYPPEIQAETTLINFTVTEAGLEDQLLALVVNKERPDLEETKTQLII 3501 Query: 321 QQWVSLDHSIK-SQIKESLLITLGSSVGDARQTSSQVIAKIASIEIPRR 464 Q + + +IK ++++ LL+ L ++ GD ++ +A I S+E +R Sbjct: 3502 Q---NTEFTIKLKELEDGLLLKLSTAEGDI----TEDVALIESLEDAKR 3543
>KPYK_TRYBO (Q27788) Pyruvate kinase (EC 2.7.1.40) (PK)| Length = 498 Score = 28.9 bits (63), Expect = 6.8 Identities = 10/32 (31%), Positives = 19/32 (59%) Frame = -3 Query: 152 CC*AKVTIWRLSS*QNLSDIHDCCTCPEERIC 57 CC +VT+W +++ + + ++ PEE IC Sbjct: 350 CCETQVTMWNMAAFEAIKNLQSFPLIPEEAIC 381
>FUTSC_DROME (Q9W596) Microtubule-associated protein futsch| Length = 5412 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = +3 Query: 270 LKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLITLGSSVGDARQT 416 LK A S +ELL+Q SI S+I+ S+ + DAR+T Sbjct: 4518 LKEDTSASASQLEELLVQSEECSSESIVSEIQTSIAQKSNKEIKDARET 4566
>STRH_STRPN (P49610) Beta-N-acetylhexosaminidase precursor (EC 3.2.1.52)| Length = 1312 Score = 28.5 bits (62), Expect = 8.9 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 3/104 (2%) Frame = +3 Query: 24 QASERARKHPPADSFFWAGATVMDITQILLAAQSPDGNLRSAAEANIKQF---QEQNLPN 194 +++E+A P D + +V + + A +S D NL A + I Q ++ + N Sbjct: 550 ESAEQALNEVPKDLNRYTAESVTAVKEAEKAIRSLDSNLSRAQQDTIDQAIAKLQETVNN 609 Query: 195 FLLSLSVELSNDERPPESRRLAGIILKNSLDAKDSARKELLIQQ 326 L+L+ E +E E++R + KN + + D+ RK + Q Sbjct: 610 --LTLTPEAQKEE---EAKREVEKLAKNKVISIDAGRKYFTLNQ 648
>DRL17_ARATH (O64790) Putative disease resistance protein At1g61300| Length = 766 Score = 28.5 bits (62), Expect = 8.9 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Frame = +3 Query: 162 IKQFQE-QNLPNFLLSLSVELSNDERPPESRRLAGI--ILKNSLDAKDSARKELLIQQWV 332 +K+ Q+ QNL + ++LS ELS ++R + GI L+ D A E L WV Sbjct: 535 LKELQKLQNLQHLAITLSAELSLNQRLANLISILGIEGFLQKPFDLSFLASMENLSSLWV 594 Query: 333 SLDHSIKSQIKES 371 + + + +ES Sbjct: 595 KNSYFSEIKCRES 607 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,030,672 Number of Sequences: 219361 Number of extensions: 1132412 Number of successful extensions: 3404 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3322 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3399 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
