ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl01h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK106419.1| Oryza sativa (japonica cultivar-group) cDNA clon... 351 1e-93
2ref|NM_197005.1| Oryza sativa (japonica cultivar-group) hypothet... 347 2e-92
3gb|AC078829.10| Oryza sativa chromosome 10 BAC OSJNBa0026O12 gen... 133 5e-28
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 133 5e-28
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 133 5e-28
6gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete ... 44 0.37
7gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 44 0.37
8emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete ... 44 0.37
9gb|AF108191.1|AF108191 Streptomyces coelicolor DNA polymerase II... 44 0.37
10gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 42 1.5
11gb|DQ377271.1| Bacillus thuringiensis serovar cameroun strain IE... 42 1.5
12ref|NM_001030611.1| Gallus gallus THO complex 3 (THOC3), mRNA 40 5.7
13ref|NM_190896.1| Oryza sativa (japonica cultivar-group), predic... 40 5.7
14ref|NM_144490.1| Homo sapiens A kinase (PRKA) anchor protein 11 ... 40 5.7
15ref|XM_591214.2| PREDICTED: Bos taurus similar to SH3 domain and... 40 5.7
16gb|AC145557.3| Mus musculus BAC clone RP23-313I19 from chromosom... 40 5.7
17gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 5.7
18gb|AC140193.3| Mus musculus BAC clone RP23-247C12 from chromosom... 40 5.7
19emb|CR733192.1| Gallus gallus finished cDNA, clone ChEST244o22 40 5.7
20emb|AL136527.9| Human DNA sequence from clone RP11-215B13 on chr... 40 5.7
21ref|XM_964656.1| PREDICTED: Tribolium castaneum similar to CG331... 40 5.7
22gb|AC007622.28| Homo sapiens 12 BAC RP11-864J10 (Roswell Park Ca... 40 5.7
23emb|AJ720936.1| Gallus gallus mRNA for hypothetical protein, clo... 40 5.7
24dbj|AK125707.1| Homo sapiens cDNA FLJ43719 fis, clone TESOP2006060 40 5.7
25gb|AC108516.5| Homo sapiens BAC clone RP11-529H2 from 4, complet... 40 5.7
26dbj|AK002166.1| Homo sapiens cDNA FLJ11304 fis, clone PLACE10099... 40 5.7
27dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 40 5.7
28ref|XM_940845.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 5.7
29ref|XM_926524.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 5.7
30dbj|AK015680.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 5.7
31dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
32gb|AC087564.6| Homo sapiens chromosome 16 clone RP11-437L7, comp... 40 5.7
33gb|AC111186.11| Homo sapiens chromosome 17, clone RP11-1112G13, ... 40 5.7
34gb|AC087651.19| Homo sapiens chromosome 17, clone RP11-309N17, c... 40 5.7
35dbj|AP003299.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
36dbj|AK067879.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
37emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 5.7
38gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 40 5.7
39emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 5.7
40gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 40 5.7 
>dbj|AK106419.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B01, full
           insert sequence
          Length = 4184

 Score =  351 bits (177), Expect = 1e-93
 Identities = 234/253 (92%)
 Strand = Plus / Plus

                                                                       
Query: 161 ccatgcagggcttcccgggcggcgtccccgatccgcagcagctccaggccaccatgctcg 220
           |||||||||| ||||| ||||||| |||||||||||||||||| ||| |||||||||| |
Sbjct: 154 ccatgcaggggttccccggcggcgcccccgatccgcagcagctgcagtccaccatgctgg 213

                                                                       
Query: 221 ccatcgagcaggcctgctccctcatccaggtgcacatgaatccggctgaagcggaaaaag 280
           ||||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||
Sbjct: 214 ccatcgagcaggcctgctccctcatccagatgcacatgagtccagctgatgcggaaaaag 273

                                                                       
Query: 281 ttctgagttcactccattcatctctgatgccttatcaagcatgcagatttattcttgaga 340
           || | |||||||| ||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 274 ttataagttcactgcattcatctccaatgccttatcaagcatgcagatttattcttgaga 333

                                                                       
Query: 341 catccctaatgccaaatgcaagattccaagctgctggagcaattggtgatgctgcaataa 400
           ||||||  ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 334 catcccacatgccaaatgcgagattccaagctgctggagcaattggtgatgcagcaataa 393

                        
Query: 401 gggagtggggaat 413
           |||||||||||||
Sbjct: 394 gggagtggggaat 406
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>ref|NM_197005.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0026O12.10), mRNA
          Length = 3201

 Score =  347 bits (175), Expect = 2e-92
 Identities = 232/251 (92%)
 Strand = Plus / Plus

                                                                       
Query: 163 atgcagggcttcccgggcggcgtccccgatccgcagcagctccaggccaccatgctcgcc 222
           |||||||| ||||| ||||||| |||||||||||||||||| ||| |||||||||| |||
Sbjct: 1   atgcaggggttccccggcggcgcccccgatccgcagcagctgcagtccaccatgctggcc 60

                                                                       
Query: 223 atcgagcaggcctgctccctcatccaggtgcacatgaatccggctgaagcggaaaaagtt 282
           ||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||||
Sbjct: 61  atcgagcaggcctgctccctcatccagatgcacatgagtccagctgatgcggaaaaagtt 120

                                                                       
Query: 283 ctgagttcactccattcatctctgatgccttatcaagcatgcagatttattcttgagaca 342
            | |||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 121 ataagttcactgcattcatctccaatgccttatcaagcatgcagatttattcttgagaca 180

                                                                       
Query: 343 tccctaatgccaaatgcaagattccaagctgctggagcaattggtgatgctgcaataagg 402
           ||||  ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 181 tcccacatgccaaatgcgagattccaagctgctggagcaattggtgatgcagcaataagg 240

                      
Query: 403 gagtggggaat 413
           |||||||||||
Sbjct: 241 gagtggggaat 251
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>gb|AC078829.10| Oryza sativa chromosome 10 BAC OSJNBa0026O12 genomic sequence, complete
              sequence
          Length = 163279

 Score =  133 bits (67), Expect = 5e-28
 Identities = 85/91 (93%)
 Strand = Plus / Minus

                                                                          
Query: 161    ccatgcagggcttcccgggcggcgtccccgatccgcagcagctccaggccaccatgctcg 220
              |||||||||| ||||| ||||||| |||||||||||||||||| ||| |||||||||| |
Sbjct: 108589 ccatgcaggggttccccggcggcgcccccgatccgcagcagctgcagtccaccatgctgg 108530

                                             
Query: 221    ccatcgagcaggcctgctccctcatccaggt 251
              |||||||||||||||||||||||||||||||
Sbjct: 108529 ccatcgagcaggcctgctccctcatccaggt 108499



 Score =  121 bits (61), Expect = 2e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                          
Query: 337    gagacatccctaatgccaaatgcaagattccaagctgctggagcaattggtgatgctgca 396
              ||||||||||  ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 106600 gagacatcccacatgccaaatgcgagattccaagctgctggagcaattggtgatgcagca 106541

                               
Query: 397    ataagggagtggggaat 413
              |||||||||||||||||
Sbjct: 106540 ataagggagtggggaat 106524



 Score =  109 bits (55), Expect = 7e-21
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                          
Query: 251    tgcacatgaatccggctgaagcggaaaaagttctgagttcactccattcatctctgatgc 310
              ||||||||| ||| ||||| |||||||||||| | |||||||| ||||||||||  ||||
Sbjct: 107486 tgcacatgagtccagctgatgcggaaaaagttataagttcactgcattcatctccaatgc 107427

                                         
Query: 311    cttatcaagcatgcagatttattcttg 337
              |||||||||||||||||||||||||||
Sbjct: 107426 cttatcaagcatgcagatttattcttg 107400
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  133 bits (67), Expect = 5e-28
 Identities = 85/91 (93%)
 Strand = Plus / Plus

                                                                            
Query: 161      ccatgcagggcttcccgggcggcgtccccgatccgcagcagctccaggccaccatgctcg 220
                |||||||||| ||||| ||||||| |||||||||||||||||| ||| |||||||||| |
Sbjct: 17263690 ccatgcaggggttccccggcggcgcccccgatccgcagcagctgcagtccaccatgctgg 17263749

                                               
Query: 221      ccatcgagcaggcctgctccctcatccaggt 251
                |||||||||||||||||||||||||||||||
Sbjct: 17263750 ccatcgagcaggcctgctccctcatccaggt 17263780



 Score =  121 bits (61), Expect = 2e-24
 Identities = 73/77 (94%)
 Strand = Plus / Plus

                                                                            
Query: 337      gagacatccctaatgccaaatgcaagattccaagctgctggagcaattggtgatgctgca 396
                ||||||||||  ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 17265679 gagacatcccacatgccaaatgcgagattccaagctgctggagcaattggtgatgcagca 17265738

                                 
Query: 397      ataagggagtggggaat 413
                |||||||||||||||||
Sbjct: 17265739 ataagggagtggggaat 17265755



 Score =  109 bits (55), Expect = 7e-21
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                            
Query: 251      tgcacatgaatccggctgaagcggaaaaagttctgagttcactccattcatctctgatgc 310
                ||||||||| ||| ||||| |||||||||||| | |||||||| ||||||||||  ||||
Sbjct: 17264793 tgcacatgagtccagctgatgcggaaaaagttataagttcactgcattcatctccaatgc 17264852

                                           
Query: 311      cttatcaagcatgcagatttattcttg 337
                |||||||||||||||||||||||||||
Sbjct: 17264853 cttatcaagcatgcagatttattcttg 17264879
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  133 bits (67), Expect = 5e-28
 Identities = 85/91 (93%)
 Strand = Plus / Plus

                                                                            
Query: 161      ccatgcagggcttcccgggcggcgtccccgatccgcagcagctccaggccaccatgctcg 220
                |||||||||| ||||| ||||||| |||||||||||||||||| ||| |||||||||| |
Sbjct: 17272730 ccatgcaggggttccccggcggcgcccccgatccgcagcagctgcagtccaccatgctgg 17272789

                                               
Query: 221      ccatcgagcaggcctgctccctcatccaggt 251
                |||||||||||||||||||||||||||||||
Sbjct: 17272790 ccatcgagcaggcctgctccctcatccaggt 17272820



 Score =  121 bits (61), Expect = 2e-24
 Identities = 73/77 (94%)
 Strand = Plus / Plus

                                                                            
Query: 337      gagacatccctaatgccaaatgcaagattccaagctgctggagcaattggtgatgctgca 396
                ||||||||||  ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 17274719 gagacatcccacatgccaaatgcgagattccaagctgctggagcaattggtgatgcagca 17274778

                                 
Query: 397      ataagggagtggggaat 413
                |||||||||||||||||
Sbjct: 17274779 ataagggagtggggaat 17274795



 Score =  109 bits (55), Expect = 7e-21
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                            
Query: 251      tgcacatgaatccggctgaagcggaaaaagttctgagttcactccattcatctctgatgc 310
                ||||||||| ||| ||||| |||||||||||| | |||||||| ||||||||||  ||||
Sbjct: 17273833 tgcacatgagtccagctgatgcggaaaaagttataagttcactgcattcatctccaatgc 17273892

                                           
Query: 311      cttatcaagcatgcagatttattcttg 337
                |||||||||||||||||||||||||||
Sbjct: 17273893 cttatcaagcatgcagatttattcttg 17273919
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>gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete genome
          Length = 1913428

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 143     aagcagcagtagccgccgccat 164
               ||||||||||||||||||||||
Sbjct: 1845327 aagcagcagtagccgccgccat 1845348
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 213     catgctcgccatcgagcaggcc 234
               ||||||||||||||||||||||
Sbjct: 1654870 catgctcgccatcgagcaggcc 1654891
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>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29
          Length = 321250

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 170    gcttcccgggcggcgtccccga 191
              ||||||||||||||||||||||
Sbjct: 112194 gcttcccgggcggcgtccccga 112173
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>gb|AF108191.1|AF108191 Streptomyces coelicolor DNA polymerase III alpha subunit (dnaE) gene,
            complete cds
          Length = 4519

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 170  gcttcccgggcggcgtccccga 191
            ||||||||||||||||||||||
Sbjct: 1261 gcttcccgggcggcgtccccga 1282
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 156     cgccgccatgcagggcttccc 176
               |||||||||||||||||||||
Sbjct: 1162201 cgccgccatgcagggcttccc 1162221
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>gb|DQ377271.1| Bacillus thuringiensis serovar cameroun strain IEBC-T32 001 flagellin
            (hag) gene, partial cds
          Length = 1272

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 368  aagctgctggagcaattggtgatgc 392
            |||||||| ||||||||||||||||
Sbjct: 983  aagctgctcgagcaattggtgatgc 1007
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>ref|NM_001030611.1| Gallus gallus THO complex 3 (THOC3), mRNA
          Length = 1604

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 ccgcagcagctccaggccac 212
           ||||||||||||||||||||
Sbjct: 143 ccgcagcagctccaggccac 124
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>ref|NM_190896.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 669

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 32  ctccacttcggcctccgcctcgct 55
           ||||||||| ||||||||||||||
Sbjct: 106 ctccacttccgcctccgcctcgct 83
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>ref|NM_144490.1| Homo sapiens A kinase (PRKA) anchor protein 11 (AKAP11), transcript
            variant 2, mRNA
          Length = 5947

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 298  tcatctctgatgccttatcaagcatgcagatt 329
            |||||| |||||| ||||||||||||||||||
Sbjct: 5519 tcatctgtgatgc-ttatcaagcatgcagatt 5489
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>ref|XM_591214.2| PREDICTED: Bos taurus similar to SH3 domain and tetratricopeptide
           repeats 1 (LOC513522), mRNA
          Length = 4665

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 192 tccgcagcagctccaggcca 211
           ||||||||||||||||||||
Sbjct: 464 tccgcagcagctccaggcca 445
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>gb|AC145557.3| Mus musculus BAC clone RP23-313I19 from chromosome 19, complete
             sequence
          Length = 226099

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 41    ggcctccgcctcgctcccacccca 64
             |||||||||||||||||| |||||
Sbjct: 75751 ggcctccgcctcgctcccgcccca 75728
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 27      cggctctccacttcggcctc 46
               ||||||||||||||||||||
Sbjct: 2569677 cggctctccacttcggcctc 2569696
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>gb|AC140193.3| Mus musculus BAC clone RP23-247C12 from chromosome 19, complete
            sequence
          Length = 173527

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 41   ggcctccgcctcgctcccacccca 64
            |||||||||||||||||| |||||
Sbjct: 2828 ggcctccgcctcgctcccgcccca 2851
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>emb|CR733192.1| Gallus gallus finished cDNA, clone ChEST244o22
          Length = 1552

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 ccgcagcagctccaggccac 212
           ||||||||||||||||||||
Sbjct: 107 ccgcagcagctccaggccac 88
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>emb|AL136527.9| Human DNA sequence from clone RP11-215B13 on chromosome 13 Contains the
             AKAP11 gene for A kinase (PRKA) anchor protein 11,  part
             of a novel gene, a fumarate hydratase (FH) pseudogene, the
             3' end of the  DGKH gene for diacylglycerol kinase eta and
             a CpG Island, complete sequence
          Length = 146853

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                             
Query: 298   tcatctctgatgccttatcaagcatgcagatt 329
             |||||| |||||| ||||||||||||||||||
Sbjct: 58726 tcatctgtgatgc-ttatcaagcatgcagatt 58756
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>ref|XM_964656.1| PREDICTED: Tribolium castaneum similar to CG33181-PA (LOC658250),
           mRNA
          Length = 1716

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  acttcggcctccgcctcgct 55
           ||||||||||||||||||||
Sbjct: 422 acttcggcctccgcctcgct 403
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>gb|AC007622.28| Homo sapiens 12 BAC RP11-864J10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 121700

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   ccctaatgccaaatgcaaga 363
             ||||||||||||||||||||
Sbjct: 55061 ccctaatgccaaatgcaaga 55080
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>emb|AJ720936.1| Gallus gallus mRNA for hypothetical protein, clone 30f6
          Length = 1604

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 ccgcagcagctccaggccac 212
           ||||||||||||||||||||
Sbjct: 143 ccgcagcagctccaggccac 124
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>dbj|AK125707.1| Homo sapiens cDNA FLJ43719 fis, clone TESOP2006060
          Length = 2958

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 374  ctggagcaattggtgatgct 393
            ||||||||||||||||||||
Sbjct: 2301 ctggagcaattggtgatgct 2282
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>gb|AC108516.5| Homo sapiens BAC clone RP11-529H2 from 4, complete sequence
          Length = 186202

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 374    ctggagcaattggtgatgct 393
              ||||||||||||||||||||
Sbjct: 183720 ctggagcaattggtgatgct 183701
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>dbj|AK002166.1| Homo sapiens cDNA FLJ11304 fis, clone PLACE1009997, weakly similar to
            Rattus norvegicus A-kinase anchoring protein AKAP 220
            mRNA
          Length = 2412

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 298  tcatctctgatgccttatcaagcatgcagatt 329
            |||||| |||||| ||||||||||||||||||
Sbjct: 1984 tcatctgtgatgc-ttatcaagcatgcagatt 1954
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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 360     aagattccaagctgctggag 379
               ||||||||||||||||||||
Sbjct: 1578793 aagattccaagctgctggag 1578774
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>ref|XM_940845.1| PREDICTED: Homo sapiens hypothetical protein LOC651643 (LOC651643),
            mRNA
          Length = 2947

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 374  ctggagcaattggtgatgct 393
            ||||||||||||||||||||
Sbjct: 2296 ctggagcaattggtgatgct 2277
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>ref|XM_926524.1| PREDICTED: Homo sapiens hypothetical protein LOC643154 (LOC643154),
            mRNA
          Length = 2945

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 374  ctggagcaattggtgatgct 393
            ||||||||||||||||||||
Sbjct: 2294 ctggagcaattggtgatgct 2275
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>dbj|AK015680.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
          library, clone:4930502J22 product:frequently rearranged
          in advanced T-cell lymphomas, full insert sequence
          Length = 1186

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 41 ggcctccgcctcgctcccacccca 64
          |||||||||||||||||| |||||
Sbjct: 31 ggcctccgcctcgctcccgcccca 54
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 32       ctccacttcggcctccgcctcgct 55
                ||||||||| ||||||||||||||
Sbjct: 33696765 ctccacttccgcctccgcctcgct 33696742
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>gb|AC087564.6| Homo sapiens chromosome 16 clone RP11-437L7, complete sequence
          Length = 157233

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                             
Query: 144   agcagcagtagccgccgccatgcagggcttcc 175
             |||||||| ||||||||||||| |||||||||
Sbjct: 98340 agcagcagcagccgccgccatg-agggcttcc 98370
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>gb|AC111186.11| Homo sapiens chromosome 17, clone RP11-1112G13, complete sequence
          Length = 145601

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 374   ctggagcaattggtgatgct 393
             ||||||||||||||||||||
Sbjct: 92100 ctggagcaattggtgatgct 92081
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>gb|AC087651.19| Homo sapiens chromosome 17, clone RP11-309N17, complete sequence
          Length = 197148

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 374    ctggagcaattggtgatgct 393
              ||||||||||||||||||||
Sbjct: 170938 ctggagcaattggtgatgct 170957
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>dbj|AP003299.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0699H05
          Length = 144850

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 32    ctccacttcggcctccgcctcgct 55
             ||||||||| ||||||||||||||
Sbjct: 49835 ctccacttccgcctccgcctcgct 49812
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>dbj|AK067879.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123M04,
          full insert sequence
          Length = 543

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 32 ctccacttcggcctccgcctcgct 55
          ||||||||| ||||||||||||||
Sbjct: 81 ctccacttccgcctccgcctcgct 58
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 163    atgcagggcttcccgggcggcgtccccg 190
              |||| |||||||||||||||| ||||||
Sbjct: 337388 atgccgggcttcccgggcggcttccccg 337415
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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 304     ctgatgccttatcaagcatg 323
               ||||||||||||||||||||
Sbjct: 2719468 ctgatgccttatcaagcatg 2719449
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 165    gcagggcttcccgggcggcg 184
              ||||||||||||||||||||
Sbjct: 956706 gcagggcttcccgggcggcg 956687
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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 360   aagattccaagctgctggag 379
             ||||||||||||||||||||
Sbjct: 42090 aagattccaagctgctggag 42109


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,920,279
Number of Sequences: 3902068
Number of extensions: 3920279
Number of successful extensions: 76489
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 76085
Number of HSP's gapped (non-prelim): 408
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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