Clone Information

BLAST Search Result

Clone Name	bastl01g08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1	40	0.002
2	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	38	0.014
3	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	38	0.014
4	SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1...	38	0.014
5	CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22	37	0.018
6	DCUP_MAIZE (O81220) Uroporphyrinogen decarboxylase, chloroplast ...	35	0.070
7	PI5PA_MOUSE (P59644) Phosphatidylinositol 4,5-bisphosphate 5-pho...	35	0.092
8	SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)	35	0.12
9	RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41	35	0.12
10	CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22	35	0.12
11	SYN1_RAT (P09951) Synapsin-1 (Synapsin I)	34	0.16
12	SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)	34	0.20
13	SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)	33	0.35
14	CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22	32	0.78
15	SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)	32	0.78
16	PI5PA_RAT (Q9JMC1) Phosphatidylinositol 4,5-bisphosphate 5-phosp...	32	0.78
17	YKR4_EBV (P30117) Hypothetical protein BKRF4	32	1.0
18	CQ028_HUMAN (Q8IV36) Protein C17orf28 (Down-regulated in multipl...	32	1.0
19	RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1	31	1.3
20	CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22	31	1.3
21	UBP51_HUMAN (Q70EK9) Ubiquitin carboxyl-terminal hydrolase 51 (E...	31	1.3
22	CWC22_YARLI (Q6C8C5) Pre-mRNA-splicing factor CWC22	31	1.3
23	CWC22_USTMA (Q4PCY0) Pre-mRNA-splicing factor CWC22	31	1.7
24	MYSC_ACACA (P10569) Myosin IC heavy chain	31	1.7
25	NIPA_MOUSE (Q80YV2) Nuclear-interacting partner of ALK (Nuclear-...	31	1.7
26	SANT_PLAFN (P04928) S-antigen protein precursor	30	2.3
27	EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline...	30	2.3
28	IE18_PRVKA (P33479) Immediate-early protein IE180	30	2.3
29	LBR_MOUSE (Q3U9G9) Lamin-B receptor (Integral nuclear envelope i...	30	2.9
30	IF2_PROMT (Q46J13) Translation initiation factor IF-2	30	3.8
31	RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1	30	3.8
32	RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1	30	3.8
33	RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1	30	3.8
34	RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1	30	3.8
35	RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain...	30	3.8
36	YD52_SCHPO (Q10307) Hypothetical protein C6C3.02c in chromosome I	30	3.8
37	ERIC1_HUMAN (Q86X53) Glutamate-rich protein 1	30	3.8
38	RNF38_HUMAN (Q9H0F5) RING finger protein 38	30	3.8
39	RNF38_MOUSE (Q8BI21) RING finger protein 38	30	3.8
40	SREC2_MOUSE (P59222) Scavenger receptor class F member 2 precurs...	30	3.8
41	PRP4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolo...	29	5.0
42	POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Proteas...	29	6.6
43	NIPA_HUMAN (Q86WB0) Nuclear-interacting partner of ALK (Nuclear-...	29	6.6
44	CHSS3_HUMAN (Q70JA7) Chondroitin sulfate synthase 3 (EC 2.4.1.17...	29	6.6
45	SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precurs...	29	6.6
46	PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolo...	29	6.6
47	UL47_HHV1F (P08313) Virion protein UL47 (82/81 kDa tegument prot...	28	8.6
48	SFR11_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Ar...	28	8.6
49	HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (...	28	8.6
50	BAG3_MOUSE (Q9JLV1) BAG family molecular chaperone regulator 3 (...	28	8.6
51	UL47_HHV11 (P10231) Virion protein UL47 (82/81 kDa tegument prot...	28	8.6
52	CD2L5_MOUSE (Q69ZA1) Cell division cycle 2-like protein kinase 5...	28	8.6

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 23/55 (41%), Positives = 30/55 (54%)
 Frame = +3

Query: 174 SPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLKRRARTRSSP 338
           SPSP++++  P P RRRR+         P   PAR +RSP P    RR R+ S P
Sbjct: 525 SPSPRKRQKEPSPRRRRRS---------PSPPPARRRRSPSPPPPPRRRRSPSLP 570



 Score = 38.1 bits (87), Expect = 0.011
 Identities = 30/79 (37%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +3

Query: 108 SHFASDCISPRRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSRP--M*APGSSPARN 281
           SH  S   SPR+     R    SP  +R+  SPPP RRRR+ +   P       S P R 
Sbjct: 519 SHSRSPSPSPRK-----RQKEPSPRRRRRSPSPPPARRRRSPSPPPPPRRRRSPSLPRRR 573

Query: 282 QRSPPPRWLKRRARTRSSP 338
             SPPPR      R  S P
Sbjct: 574 SPSPPPRRRSPSPRRYSPP 592



 Score = 36.6 bits (83), Expect = 0.031
 Identities = 30/76 (39%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +3

Query: 132 SPRRGIYP*RS*TLSPSPQRKRGSP---PPVRRRRAWTRSRPM*APGSSPARNQRSPPPR 302
           SPRR     R  + SP P R+R SP   PP RRRR+ +  R       SP   +RSP PR
Sbjct: 536 SPRR-----RRRSPSPPPARRRRSPSPPPPPRRRRSPSLPRRR---SPSPPPRRRSPSPR 587

Query: 303 WLKRRARTRSSPT*VP 350
                 + R SP+  P
Sbjct: 588 RYSPPIQRRYSPSPPP 603



 Score = 36.2 bits (82), Expect = 0.041
 Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +3

Query: 132 SPRRGIYP*-RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APG-SSPARNQRSPPPRW 305
           SPRR   P  R  + SP P+R+  SPPP  +RRA        +P   S  R   SPPP+ 
Sbjct: 585 SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRA--------SPSPQSKRRVSHSPPPKQ 636

Query: 306 LKRRARTRSSPT 341
               A  R SP+
Sbjct: 637 RSSPAAKRRSPS 648



 Score = 35.4 bits (80), Expect = 0.070
 Identities = 31/69 (44%), Positives = 35/69 (50%)
 Frame = +3

Query: 132 SPRRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLK 311
           SPRR   P R     P P R R S  PVRRRR  + S    +  SS +R+ RSPP    K
Sbjct: 318 SPRRRTPPRRM----PPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRS-RSPPK---K 369

Query: 312 RRARTRSSP 338
              RT SSP
Sbjct: 370 PPKRTVSSP 378



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
 Frame = +3

Query: 159 RS*TLSPSPQRKRGSPP----PVRRRRAWTRSRPM*APGSSPARNQRSPPPRW--LKRRA 320
           RS T S S  R R   P    P RR R+ +R RP  +P   P+  +R+PP R     R  
Sbjct: 278 RSPTRSKSRSRSRSRSPSHSRPRRRHRSRSRRRP--SPRRRPSPRRRTPPRRMPPPPRHR 335

Query: 321 RTRS 332
           R+RS
Sbjct: 336 RSRS 339



 Score = 30.0 bits (66), Expect = 2.9
 Identities = 30/69 (43%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
 Frame = +3

Query: 138 RRGIYP*RS*--TLSPSPQRKRGSPPPVRRRRAWTRSRP---M*APGSSPARNQR-SPPP 299
           R+G  P RS   T SP PQ KR SP P R R + T S P        +SP R Q  SP  
Sbjct: 654 RKGSPPSRSNRETRSP-PQNKRDSPSP-RPRASHTSSSPPPLRRGASASPQRRQSPSPST 711

Query: 300 RWLKRRART 326
           R ++R +RT
Sbjct: 712 RPIRRVSRT 720



 Score = 29.3 bits (64), Expect = 5.0
 Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
 Frame = +3

Query: 132 SPRRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSR-----PM*APGS-----SPARN 281
           SP     P R  + +P P++ + S P  R  R  + SR     P  AP       SPAR+
Sbjct: 706 SPSPSTRPIRRVSRTPEPKKTKASTPSPRSARRVSSSRSASGSPEPAPKKHQGPPSPARS 765

Query: 282 QRSPPPRWLKRRARTRSSPT*VPN 353
            RSP   W    A+   SPT  P+
Sbjct: 766 -RSPSANW--SPAKKAKSPTQSPS 786



 Score = 28.5 bits (62), Expect = 8.6
 Identities = 23/66 (34%), Positives = 28/66 (42%)
 Frame = +3

Query: 132 SPRRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLK 311
           SP R     RS + SPS  R R       RRR   R RP  +P       +  PPPR  +
Sbjct: 279 SPTRSKSRSRSRSRSPSHSRPRRRHRSRSRRRPSPRRRP--SPRRRTPPRRMPPPPRHRR 336

Query: 312 RRARTR 329
            R+  R
Sbjct: 337 SRSPVR 342

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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 29/69 (42%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 132 SPRRGIYP*-RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWL 308
           SPRR   P  R  + SP P+R+  SPPP  +RRA     P      SP   QRSP     
Sbjct: 611 SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTV--T 668

Query: 309 KRRARTRSS 335
           KRR+ + SS
Sbjct: 669 KRRSPSLSS 677



 Score = 35.8 bits (81), Expect = 0.054
 Identities = 23/53 (43%), Positives = 29/53 (54%)
 Frame = +3

Query: 180 SPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLKRRARTRSSP 338
           S +R+  SPPP RRRR+ + + P   P   P R +RSP P     R RT S P
Sbjct: 556 SRRRRSPSPPPARRRRSPSPAPPP-PPPPPPPRRRRSPTP---PPRRRTPSPP 604



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +3

Query: 153 P*RS*TLSPSPQRKRGSPPPVRRRRAWTRSRP----M*APGSSPARNQRSPPPRWLKRRA 320
           P R  + +P P+R+  SPPP RR  +  R  P      +P   P R   SPPP   KRRA
Sbjct: 586 PRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPP-PKRRA 644

Query: 321 RTRSSP 338
                P
Sbjct: 645 SPSPPP 650



 Score = 33.5 bits (75), Expect = 0.27
 Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
 Frame = +3

Query: 174 SPSPQRKRGS----------PPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLKRRAR 323
           SP P R+R S          PPP RRRR+ T       P  SP   +RSP PR      +
Sbjct: 563 SPPPARRRRSPSPAPPPPPPPPPPRRRRSPTPPPRRRTP--SPPPRRRSPSPRRYSPPIQ 620

Query: 324 TRSSPT*VP 350
            R SP+  P
Sbjct: 621 RRYSPSPPP 629



 Score = 32.3 bits (72), Expect = 0.59
 Identities = 31/78 (39%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = +3

Query: 132 SPRRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLK 311
           SPRR   P R     P P R R S  P RRRR  + S    +  SS +R+ RSPP +  K
Sbjct: 320 SPRRRTPPRRM----PPPPRHRRSRSPGRRRRRSSASLSGSSSSSSSSRS-RSPPKKPPK 374

Query: 312 R-----RARTRSSPT*VP 350
           R     R   R SP+  P
Sbjct: 375 RTSSPPRKTRRLSPSASP 392



 Score = 31.6 bits (70), Expect = 1.0
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 15/82 (18%)
 Frame = +3

Query: 138 RRGIYP*RS*TLSPSPQRKR-------------GSPPPVRR-RRAWTRSRPM*APGSSPA 275
           R+G  P RS   + SPQ  +              SPPPVRR   A  + R   +P + P 
Sbjct: 680 RKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPI 739

Query: 276 RN-QRSPPPRWLKRRARTRSSP 338
           R   R+P P+ +K+ A   + P
Sbjct: 740 RRVSRTPEPKKIKKAASPSTRP 761



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +3

Query: 108 SHFASDCISPRRGIYP*RS*TLSPSPQ-RKRGSPPPVRRRRAWTRSRPM*APGSSPARNQ 284
           SH  +  +  RR   P RS   SPSP+ R++ + P ++  + W       +P +  +R +
Sbjct: 508 SHVKNGEVGRRRRHSPSRS--ASPSPRKRQKETSPRMQMGKRWQ------SPVTKSSRRR 559

Query: 285 RSPPPRWLKRRARTRSSP 338
           RSP P   +RR     +P
Sbjct: 560 RSPSPPPARRRRSPSPAP 577

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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 29/69 (42%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 132 SPRRGIYP*-RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWL 308
           SPRR   P  R  + SP P+R+  SPPP  +RRA     P      SP   QRS P    
Sbjct: 606 SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPV--T 663

Query: 309 KRRARTRSS 335
           KRR+ + SS
Sbjct: 664 KRRSPSLSS 672



 Score = 37.0 bits (84), Expect = 0.024
 Identities = 28/73 (38%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +3

Query: 132 SPRRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSRP----M*APGSSPARNQRSPPP 299
           SP     P R  T +P P+R+  SPPP RR  +  R  P      +P   P R   SPPP
Sbjct: 574 SPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPP 633

Query: 300 RWLKRRARTRSSP 338
              KRRA     P
Sbjct: 634 P-PKRRASPSPPP 645



 Score = 36.2 bits (82), Expect = 0.041
 Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +3

Query: 174 SPSPQRKRGSP---PPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLKRRARTRSSPT* 344
           SP P R+R SP   PP RRRR  T + P      SP   +RSP PR      + R SP+ 
Sbjct: 565 SPPPTRRRRSPSPAPPPRRRR--TPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSP 622

Query: 345 VP 350
            P
Sbjct: 623 PP 624



 Score = 35.0 bits (79), Expect = 0.092
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
 Frame = +3

Query: 108 SHFASDCISPRRGIYP*RS*TLSPSPQ-RKRGSPPPVRRRRAW----TRS-RPM*APGSS 269
           SH  +  +  RR   P RS   SPSP+ R++ + P ++  + W    T+S R   +P   
Sbjct: 510 SHVKNGEVGRRRRHSPSRS--ASPSPRKRQKETSPRMQMGKRWQSPVTKSGRRRRSPSPP 567

Query: 270 PARNQRSPPPRWLKRRARTRSSP 338
           P R +RSP P    RR RT + P
Sbjct: 568 PTRRRRSPSPAPPPRRRRTPTPP 590



 Score = 35.0 bits (79), Expect = 0.092
 Identities = 32/78 (41%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
 Frame = +3

Query: 132 SPRRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLK 311
           SPRR   P R     P P R R S  PVRRRR  + S    +  SS +R+ RSPP +  K
Sbjct: 322 SPRRRTPPRRM----PPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRS-RSPPKKPPK 376

Query: 312 R-----RARTRSSPT*VP 350
           R     R   R SP+  P
Sbjct: 377 RTSSPPRKTRRLSPSASP 394



 Score = 30.4 bits (67), Expect = 2.3
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +3

Query: 138 RRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APG--SSPARNQR-SPPPRWL 308
           R+G  P RS   + SPQ  +   P  R R   T S P    G  SSP R Q  SP  R +
Sbjct: 675 RKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASSSPQRRQSPSPSTRPI 734

Query: 309 KRRART 326
           +R +RT
Sbjct: 735 RRVSRT 740

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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 29/69 (42%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 132 SPRRGIYP*-RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWL 308
           SPRR   P  R  + SP P+R+  SPPP  +RRA     P      SP   QRS P    
Sbjct: 592 SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPV--T 649

Query: 309 KRRARTRSS 335
           KRR+ + SS
Sbjct: 650 KRRSPSLSS 658



 Score = 37.4 bits (85), Expect = 0.018
 Identities = 27/77 (35%), Positives = 36/77 (46%)
 Frame = +3

Query: 108 SHFASDCISPRRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQR 287
           SH  +  +  RR   P RS   SPSP++++    P  RRR         +P   P R +R
Sbjct: 510 SHVKNGEVGRRRRHSPSRS--ASPSPRKRQKETSPRGRRRR--------SPSPPPTRRRR 559

Query: 288 SPPPRWLKRRARTRSSP 338
           SP P    RR RT + P
Sbjct: 560 SPSPAPPPRRRRTPTPP 576



 Score = 37.0 bits (84), Expect = 0.024
 Identities = 28/73 (38%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +3

Query: 132 SPRRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSRP----M*APGSSPARNQRSPPP 299
           SP     P R  T +P P+R+  SPPP RR  +  R  P      +P   P R   SPPP
Sbjct: 560 SPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPP 619

Query: 300 RWLKRRARTRSSP 338
              KRRA     P
Sbjct: 620 P-PKRRASPSPPP 631



 Score = 36.2 bits (82), Expect = 0.041
 Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +3

Query: 174 SPSPQRKRGSP---PPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLKRRARTRSSPT* 344
           SP P R+R SP   PP RRRR  T + P      SP   +RSP PR      + R SP+ 
Sbjct: 551 SPPPTRRRRSPSPAPPPRRRR--TPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSP 608

Query: 345 VP 350
            P
Sbjct: 609 PP 610



 Score = 35.0 bits (79), Expect = 0.092
 Identities = 32/78 (41%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
 Frame = +3

Query: 132 SPRRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLK 311
           SPRR   P R     P P R R S  PVRRRR  + S    +  SS +R+ RSPP +  K
Sbjct: 322 SPRRRTPPRRM----PPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRS-RSPPKKPPK 376

Query: 312 R-----RARTRSSPT*VP 350
           R     R   R SP+  P
Sbjct: 377 RTSSPPRKTRRLSPSASP 394



 Score = 29.3 bits (64), Expect = 5.0
 Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +3

Query: 138 RRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSRP---M*APGSSPARNQR-SPPPRW 305
           R+G  P RS   + SPQ  +   P  R R   T S P        SSP R Q  SP  R 
Sbjct: 661 RKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRP 720

Query: 306 LKRRART 326
           ++R +RT
Sbjct: 721 IRRVSRT 727

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>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22|
          Length = 907

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
 Frame = +3

Query: 174  SPSPQRKRGSP--PPVRRRRAWTRSRPM*APGSSPAR----------NQRSPPPRWLKRR 317
            SPSP+R+R SP   PVR R +  R+    APG+S AR            RSP P   +RR
Sbjct: 829  SPSPRRRRDSPSRSPVRDRESGGRAAAA-APGNSEARRGRSYSRSPSRTRSPSPAPSRRR 887

Query: 318  ARTRSSPT*VP 350
             R  SS    P
Sbjct: 888  RRDSSSDASAP 898



 Score = 30.0 bits (66), Expect = 2.9
 Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 18/70 (25%)
 Frame = +3

Query: 174 SPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPA----------RNQRSP--------PP 299
           SPSP+ +  SP P    R+W+RSR   +P  SPA            QRSP         P
Sbjct: 11  SPSPRPR--SPSPAAPSRSWSRSRHE-SPSRSPAPMRERREEEGNEQRSPRQIAHHPRSP 67

Query: 300 RWLKRRARTR 329
           R   RRA  R
Sbjct: 68  RGSDRRAEPR 77

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>DCUP_MAIZE (O81220) Uroporphyrinogen decarboxylase, chloroplast precursor (EC|
           4.1.1.37) (URO-D) (UPD)
          Length = 393

 Score = 35.4 bits (80), Expect = 0.070
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +3

Query: 135 PRRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSP---PPRW 305
           P   ++  RS    P+    R S      RR+W R RP     ++  RNQR     PP W
Sbjct: 11  PSTSLFRGRSARAGPNAGSSRPSAAAPSERRSWRRPRPDGGRAAAGERNQREEVERPPVW 70

Query: 306 LKRRA 320
           L R+A
Sbjct: 71  LMRQA 75

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>PI5PA_MOUSE (P59644) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC|
           3.1.3.56)
          Length = 1003

 Score = 35.0 bits (79), Expect = 0.092
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +3

Query: 168 TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLKRRART 326
           TL+P   R   SPP  R R   +  RP+ AP S     +R PPP    R A++
Sbjct: 58  TLAPVGPRAAVSPPSERPRLVLSSPRPVLAPLSIAGEQKRPPPPHSSNRAAKS 110

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>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)|
          Length = 415

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +3

Query: 174 SPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPR 302
           SPSPQR+ G PP   R+ + +   P  A G+ P+  QR  PP+
Sbjct: 279 SPSPQRQAG-PPQATRQTSVSGQAPPKASGAPPSGQQRQGPPQ 320

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>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41|
          Length = 356

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
 Frame = +3

Query: 180 SPQRKRG---SPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLKRRARTRS 332
           SP++ RG   SPPP  +RR  +RS     P     R  RSPPP + KRR R+RS
Sbjct: 264 SPRKGRGESRSPPPYEKRRE-SRS----PPPYEKRRESRSPPP-YEKRRERSRS 311



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
 Frame = +3

Query: 132 SPRRGI--------YP*RS*TLSPSPQRKRG---SPPPVRRRRAWTRSRPM*APGSSPAR 278
           SPR+G         Y  R  + SP P  KR    SPPP  +RR  +RSR      SSP  
Sbjct: 264 SPRKGRGESRSPPPYEKRRESRSPPPYEKRRESRSPPPYEKRRERSRSRSK----SSPEN 319

Query: 279 NQRSPP 296
            Q   P
Sbjct: 320 GQVESP 325

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>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22|
          Length = 831

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
 Frame = +3

Query: 114 FASDCISP--RRGIYP*RS*TLSPSPQRKR-------GSPPPVRRRRAWTRSRPM*APGS 266
           ++SD  SP  RR  Y   S + SP P+R++        SPPP RRR +     P   P  
Sbjct: 709 YSSDSRSPPPRRRRYSSDSRSPSPPPRRRQYSDEPRSPSPPPRRRRYSDDSRSPSPPPRR 768

Query: 267 SPARNQRSPPPRWLKRRARTRSSPT*VPN 353
             + + RSP P   +R A    SP+  P+
Sbjct: 769 RYSGDSRSPSPPPRRRYADDSRSPSPPPH 797



 Score = 31.6 bits (70), Expect = 1.0
 Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
 Frame = +3

Query: 135 PRRGIYP*RS*TLSPSPQRKRGSP------PPVRRRRAWTRSRPM*APGSSPARNQRSP- 293
           PRR  Y     + SP P+R+R S       PP RRR +     P   P    A + RSP 
Sbjct: 734 PRRRQYSDEPRSPSPPPRRRRYSDDSRSPSPPPRRRYSGDSRSPSPPPRRRYADDSRSPS 793

Query: 294 PPRWLKRRARTRSSPT*VP 350
           PP   +R +    SP+  P
Sbjct: 794 PPPHRRRYSDDSRSPSPPP 812

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>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +3

Query: 174 SPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPR 302
           SPSPQR+ G PP   R+ + +   P    G+SP   QR  PP+
Sbjct: 549 SPSPQRQAG-PPQATRQASISGPAPPKVSGASPGGQQRQGPPQ 590

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>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)|
          Length = 705

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +3

Query: 174 SPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPR 302
           SPSPQR+ G PP   R+ + +   P  A G+ P   QR  PP+
Sbjct: 551 SPSPQRQAG-PPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQ 592

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>SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 33.1 bits (74), Expect = 0.35
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +3

Query: 174 SPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPR 302
           SPSPQR+ G PP   R+ + +   P  A G  P   QR  PP+
Sbjct: 551 SPSPQRQAG-PPQATRQTSVSGQAPPKASGVPPGGQQRQGPPQ 592

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>CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22|
          Length = 881

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 28/74 (37%), Positives = 36/74 (48%)
 Frame = +3

Query: 114 FASDCISPRRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSP 293
           ++S  +SP R     R    S SPQR    PPP RR R  + SR       SP     SP
Sbjct: 795 YSSQSLSPPR-----RRAERSVSPQR----PPPGRRPRGDSLSR-------SP-----SP 833

Query: 294 PPRWLKRRARTRSS 335
           PPR+ + + R R+S
Sbjct: 834 PPRYAREQRRRRNS 847



 Score = 28.5 bits (62), Expect = 8.6
 Identities = 23/58 (39%), Positives = 29/58 (50%)
 Frame = +3

Query: 159 RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLKRRARTRS 332
           R  + +PS  R R SP P  RRR+ + SR       SPA  +RS   R   RR R +S
Sbjct: 694 RGRSYTPSYSRSR-SPVPKSRRRSVSYSR-----SRSPAGRRRSSVSRTPPRRVRGKS 745

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>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 174 SPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPR 302
           SPSPQR+ G+ P   R+ + +   P  A G+ P   QR  PP+
Sbjct: 551 SPSPQRQAGA-PQATRQASISGPAPTKASGAPPGGQQRQGPPQ 592

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>PI5PA_RAT (Q9JMC1) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC|
           3.1.3.56) (Proline-rich inositol polyphosphate
           5-phosphatase)
          Length = 1001

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +3

Query: 171 LSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPR 302
           L+P   R   SPP  R R A +  RP+ AP S+    +R PP R
Sbjct: 59  LAPVGPRAAVSPPSERPRLALSSPRPILAPLSTAGEQKRPPPHR 102

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>YKR4_EBV (P30117) Hypothetical protein BKRF4|
          Length = 217

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +3

Query: 159 RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPR 302
           RS  +SPS Q+  G  P     R  TR+ P   P  +P R + S PPR
Sbjct: 110 RSSRVSPSTQQSSGLTPTPSFSRPRTRAPPR-PPAPAPVRGRASAPPR 156

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>CQ028_HUMAN (Q8IV36) Protein C17orf28 (Down-regulated in multiple cancers-1)|
          Length = 788

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 168 TLSPSPQR--KRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWL 308
           +L P PQ+  + GSP      +AW   R    P +S A  Q SP P W+
Sbjct: 640 SLEPEPQQSLEDGSPAKGEPSQAWREQR---RPSTSSASGQWSPTPEWV 685

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>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1|
          Length = 283

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 27/67 (40%), Positives = 31/67 (46%)
 Frame = +3

Query: 135 PRRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLKR 314
           PRR   P R   + P P   R SPP +RRR    R R       SP R +   P R   R
Sbjct: 225 PRRFSPPRR---MLPPPPMWRRSPPRMRRRSRSPRRR-------SPVRRRSRSPAR---R 271

Query: 315 RARTRSS 335
           R R+RSS
Sbjct: 272 RHRSRSS 278

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>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = +3

Query: 159 RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLKRRAR 323
           RS + S S  R   + PP+RR R+ TRSR       S +R+   PP R    R R
Sbjct: 815 RSPSRSRSRTRSPAAAPPIRRGRSGTRSR-----SRSYSRSPSPPPARGYPTRGR 864

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>UBP51_HUMAN (Q70EK9) Ubiquitin carboxyl-terminal hydrolase 51 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 51)
           (Ubiquitin-specific-processing protease 51)
           (Deubiquitinating enzyme 51)
          Length = 711

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
 Frame = +3

Query: 174 SPSPQRKRGSPPPVRRRRAWTRSRP-M*APGSSPARNQRSPPP-----------RWLKRR 317
           S SP   R  P P  + RA +RS+P + AP   PAR    PPP           R  +RR
Sbjct: 94  SSSPVCPRRKPRPRPQPRARSRSQPGLSAPPPPPARPPPPPPPPPPPAPRPRAWRGSRRR 153

Query: 318 ARTRSSP 338
           +R  S P
Sbjct: 154 SRPGSRP 160

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>CWC22_YARLI (Q6C8C5) Pre-mRNA-splicing factor CWC22|
          Length = 954

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = +3

Query: 159  RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQ---RSPPPRWLKRRARTR 329
            RS + S S  R R   PP  RRR+ + SR   +P  S +R++   RSP PR   + A+ R
Sbjct: 829  RSRSRSRSLSRDRTGSPPRGRRRSRSYSR---SPSRSYSRSRSYSRSPSPRPKSKGAKGR 885

Query: 330  SS 335
            SS
Sbjct: 886  SS 887

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>CWC22_USTMA (Q4PCY0) Pre-mRNA-splicing factor CWC22|
          Length = 886

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +3

Query: 195 RGSPPPV-----RRRRAWTRSRPM*APGSSPARNQRSPPPRWLKRRARTR 329
           R SPP       +R+R+ TRS    +  S      RSPPPR  +RR  +R
Sbjct: 20  RSSPPDAGVTAHKRKRSPTRSVSSRSTSSRSPSRSRSPPPRSRRRRRSSR 69



 Score = 28.5 bits (62), Expect = 8.6
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +3

Query: 168 TLSPSPQRKRGSPPPVRRRRAWTRSR 245
           T S SP R R  PP  RRRR  +R R
Sbjct: 46  TSSRSPSRSRSPPPRSRRRRRSSRDR 71

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>MYSC_ACACA (P10569) Myosin IC heavy chain|
          Length = 1168

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 174  SPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPP 299
            +P    + G+PPP   R      R M APG +  R + +PPP
Sbjct: 1075 APGGPGRGGAPPPGAGRAGPPGGRGMPAPGGAAPRGRGAPPP 1116

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>NIPA_MOUSE (Q80YV2) Nuclear-interacting partner of ALK (Nuclear-interacting|
           partner of anaplastic lymphoma kinase) (mNIPA) (Zinc
           finger C3HC-type protein 1)
          Length = 501

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +3

Query: 111 HFASDCISPRRGIYP*RS*TLSPSPQRKRGSPPP-VRRRRAWTRSRPM*AP---GSSPAR 278
           HF     SPRR +   +  T+SP  ++   SP P V R R+W  S P+  P    +SP  
Sbjct: 313 HFPLVPESPRRMMTRSQDATVSPGSEQSEKSPGPIVSRTRSWESSSPVDRPELEAASPTT 372

Query: 279 NQR 287
             R
Sbjct: 373 RSR 375

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>SANT_PLAFN (P04928) S-antigen protein precursor|
          Length = 309

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 20/80 (25%), Positives = 34/80 (42%)
 Frame = +2

Query: 218 EEKSMDALTSDVSPRLXXXXXXXXPAAEVVEEKGADALKSDLSPELMSTXXXXXXXXPAA 397
           +E++   +  D +P+           AE ++   A+A KSD +  L S          A 
Sbjct: 82  DEENEIIVGQDEAPKSDEAEALKSDEAEALKSDEAEARKSDEAEALKSDEAEARKSDEAE 141

Query: 398 GGEEDDIDAIKSDVASFASS 457
             + D+ +A+KSD A    S
Sbjct: 142 ALKSDEAEALKSDEAEARKS 161



 Score = 29.3 bits (64), Expect = 5.0
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +2

Query: 233 DALTSDVSPRLXXXXXXXXPA--AEVVEEKGADALKSDLSPELMSTXXXXXXXXPAAGGE 406
           +AL SD +  L         +  AE ++   A+A KSD +  L S          A   +
Sbjct: 101 EALKSDEAEALKSDEAEARKSDEAEALKSDEAEARKSDEAEALKSDEAEALKSDEAEARK 160

Query: 407 EDDIDAIKSDVASFASS 457
            D+ +A+KSD A    S
Sbjct: 161 SDEAEALKSDEAEALKS 177



 Score = 28.5 bits (62), Expect = 8.6
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +2

Query: 296 AEVVEEKGADALKSDLSPELMSTXXXXXXXXPAAGGEEDDIDAIKSDVASFASS 457
           AE  +   A+ALKSD +  L S          A   + D+ +A+KSD A    S
Sbjct: 132 AEARKSDEAEALKSDEAEALKSDEAEARKSDEAEALKSDEAEALKSDEAEARKS 185

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>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +3

Query: 129 ISPRRGIYP*RS*TLSPS-PQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPP 299
           + P RG  P  S  +SPS P    G+PPP               PG  P+  QR P P
Sbjct: 99  LPPSRGFNPPPSPVISPSHPPPSYGAPPPSH------------GPGHLPSHGQRPPSP 144

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>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 153 P*RS*TLSPSPQRKRGSPPPVRRRRAWTRSR--PM*APGSSPARNQRSPPP 299
           P RS   + SP    GSP P    R W+ +R  P+  PG  PA   R+P P
Sbjct: 164 PGRSSPSAASPASSSGSPGPSAAPRRWSPARGDPVGEPG--PAARPRTPAP 212

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>LBR_MOUSE (Q3U9G9) Lamin-B receptor (Integral nuclear envelope inner membrane|
           protein)
          Length = 626

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 20/54 (37%), Positives = 31/54 (57%)
 Frame = +3

Query: 129 ISPRRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRS 290
           I P +     +S ++S SP R+RGS     R R+ +RSR   +PG +P  ++RS
Sbjct: 54  IKPLKSFKQRKSGSISSSPSRRRGS-----RSRSRSRSRSR-SPGRAPKGSRRS 101

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>IF2_PROMT (Q46J13) Translation initiation factor IF-2|
          Length = 1183

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 168 TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRW 305
           +L P  +   G+ PPV R       +P   PG + A  +R+  P W
Sbjct: 444 SLRPKRENSTGARPPVNRPTPAAPKKPAHRPGGTAAAPRRTGRPDW 489

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>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 28/67 (41%), Positives = 32/67 (47%)
 Frame = +3

Query: 135 PRRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLKR 314
           PRR   P R   L P P  +R SPP +RRR    R R       SP R +   P R   R
Sbjct: 247 PRRFSPPRRM--LPPPPMWRR-SPPRMRRRSRSPRRR-------SPVRRRSRSPGR---R 293

Query: 315 RARTRSS 335
           R R+RSS
Sbjct: 294 RHRSRSS 300

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>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 28/67 (41%), Positives = 32/67 (47%)
 Frame = +3

Query: 135 PRRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLKR 314
           PRR   P R   L P P  +R SPP +RRR    R R       SP R +   P R   R
Sbjct: 247 PRRFSPPRRM--LPPPPMWRR-SPPRMRRRSRSPRRR-------SPVRRRSRSPGR---R 293

Query: 315 RARTRSS 335
           R R+RSS
Sbjct: 294 RHRSRSS 300

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>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 28/67 (41%), Positives = 32/67 (47%)
 Frame = +3

Query: 135 PRRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLKR 314
           PRR   P R   L P P  +R SPP +RRR    R R       SP R +   P R   R
Sbjct: 247 PRRFSPPRRM--LPPPPMWRR-SPPRMRRRSRSPRRR-------SPVRRRSRSPGR---R 293

Query: 315 RARTRSS 335
           R R+RSS
Sbjct: 294 RHRSRSS 300

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>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 28/67 (41%), Positives = 32/67 (47%)
 Frame = +3

Query: 135 PRRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLKR 314
           PRR   P R   L P P  +R SPP +RRR    R R       SP R +   P R   R
Sbjct: 247 PRRFSPPRRM--LPPPPMWRR-SPPRMRRRSRSPRRR-------SPVRRRSRSPGR---R 293

Query: 315 RARTRSS 335
           R R+RSS
Sbjct: 294 RHRSRSS 300

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>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related|
           protein LDC2)
          Length = 305

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 28/67 (41%), Positives = 32/67 (47%)
 Frame = +3

Query: 135 PRRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLKR 314
           PRR   P R   L P P  +R SPP +RRR    R R       SP R +   P R   R
Sbjct: 247 PRRFSPPRRM--LPPPPMWRR-SPPRMRRRSRSPRRR-------SPVRRRSRSPGR---R 293

Query: 315 RARTRSS 335
           R R+RSS
Sbjct: 294 RHRSRSS 300

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>YD52_SCHPO (Q10307) Hypothetical protein C6C3.02c in chromosome I|
          Length = 172

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
 Frame = +3

Query: 183 PQRKRGSPPPVRRRRAWTRS-------RPM*APGSSPARNQRSPPP 299
           P+R+  +PPP R   A + S       R M AP  +P+R Q++PPP
Sbjct: 2   PRRRSAAPPPRRAAPARSASTAAALPPRTM-APPPAPSRVQQAPPP 46

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>ERIC1_HUMAN (Q86X53) Glutamate-rich protein 1|
          Length = 443

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 23/73 (31%), Positives = 29/73 (39%)
 Frame = +2

Query: 218 EEKSMDALTSDVSPRLXXXXXXXXPAAEVVEEKGADALKSDLSPELMSTXXXXXXXXPAA 397
           EE  +D  TS+  P L           +  EE GADA + DL+              P  
Sbjct: 207 EEDGVD--TSEEDPTLAGEED----VKDTREEDGADASEEDLTRARQEEGADASEEDPTP 260

Query: 398 GGEEDDIDAIKSD 436
            GEED  DA + D
Sbjct: 261 AGEEDVKDAREED 273

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>RNF38_HUMAN (Q9H0F5) RING finger protein 38|
          Length = 515

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 23/66 (34%)
 Frame = +3

Query: 174 SPSPQRKR----------GSPPPVRRRRAW----TRSRPM*APG---------SSPARNQ 284
           SPSP+R+R           SP P    R W     R  P   P          ++PARN+
Sbjct: 58  SPSPKRQRLSHSVFDYTSASPAPSPPMRPWEMTSNRQPPSVRPSQHHFSGERCNTPARNR 117

Query: 285 RSPPPR 302
           RSPP R
Sbjct: 118 RSPPVR 123

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>RNF38_MOUSE (Q8BI21) RING finger protein 38|
          Length = 518

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 23/66 (34%)
 Frame = +3

Query: 174 SPSPQRKR----------GSPPPVRRRRAW----TRSRPM*APG---------SSPARNQ 284
           SPSP+R+R           SP P    R W     R  P   P          ++PARN+
Sbjct: 61  SPSPKRQRLSHSVFDYTSASPAPSPPMRPWEMTSNRQPPSVRPNQHHFSGERCNTPARNR 120

Query: 285 RSPPPR 302
           RSPP R
Sbjct: 121 RSPPVR 126

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>SREC2_MOUSE (P59222) Scavenger receptor class F member 2 precursor (Scavenger|
           receptor expressed by endothelial cells 2 protein)
           (SREC-II)
          Length = 833

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +3

Query: 168 TLSPSPQRKRGSP--PPVRRRRAW---TRSRPM*APGSSPARNQRSPPPRWLKR 314
           +LSPSP+R++  P  P  + + +W     S    AP   PA  + +P P   KR
Sbjct: 636 SLSPSPERRKPPPPDPATKPKVSWIHGKHSAAAAAPSPPPAGRKAAPSPSGRKR 689

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>PRP4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)|
           (PRP4 pre-mRNA-processing factor 4 homolog) (PRP4
           kinase)
          Length = 1007

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 22/50 (44%), Positives = 26/50 (52%)
 Frame = +3

Query: 180 SPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLKRRARTR 329
           SP R+R S  P+RRR     SR       SP R  RSP  R   RR+R+R
Sbjct: 437 SPTRRR-SRSPIRRR-----SRSPLRRSRSPRRRSRSPRRRDRGRRSRSR 480

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>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC|
           3.4.22.-) (p150); RNA-directed RNA polymerase/helicase
           (EC 2.7.7.48) (EC 3.6.1.-) (p90)]
          Length = 2115

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 153 P*RS*TLSPSPQRKRGSPPPVRR-RRAWTRSRPM*APGSSPARNQRSPPP 299
           P +S   SP P    G PPP RR RR+   S     P  +PAR+   P P
Sbjct: 713 PRQSAAASPPP----GDPPPPRRARRSQRHSDARGTPPPAPARDPPPPAP 758

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>NIPA_HUMAN (Q86WB0) Nuclear-interacting partner of ALK (Nuclear-interacting|
           partner of anaplastic lymphoma kinase) (hNIPA) (Zinc
           finger C3HC-type protein 1)
          Length = 502

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +3

Query: 132 SPRRGIYP*RS*TLSPSPQRKRGSPPP-VRRRRAWTRSRPM*AP---GSSPARNQR 287
           SPRR +   +  T SP  ++   SP P V R R+W  S P+  P    +SP    R
Sbjct: 321 SPRRMMTRSQDATFSPGSEQAEKSPGPIVSRTRSWDSSSPVDRPEPEAASPTTRTR 376

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>CHSS3_HUMAN (Q70JA7) Chondroitin sulfate synthase 3 (EC 2.4.1.175)|
           (Glucuronosyl-N-acetylgalactosaminyl-proteoglycan
           4-beta-N-acetylgalactosaminyltransferase II)
           (Chondroitin synthase 2)
           (N-acetylgalactosaminyl-proteoglycan
           3-beta-glucuronosyltransferase
          Length = 882

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = +3

Query: 177 PSPQ---RKRGSPPPVRRRRAWTRSRPM*APGSSPARNQ--RSPPPRWLKRRARTRSSPT 341
           P PQ   R+  SPPP R+        P  APG +  R+   + PPP   +RR R     T
Sbjct: 64  PQPQSRPRQEQSPPPARQDLQGP-PLPEAAPGITSFRSSPWQQPPPLQQRRRGREPEGAT 122

Query: 342 *VPNS 356
            +P +
Sbjct: 123 GLPGA 127

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>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger|
           receptor expressed by endothelial cells 2 protein)
           (SREC-II) (SRECRP-1)
          Length = 866

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
 Frame = +3

Query: 168 TLSPSPQRKRGSP--PPVRRRRAWTRSRPM-----*APGSSPARNQRSPPPRWLKRRART 326
           +LSPSP+R++  P  P  + + +W   +        AP   P  ++ +P P   KR    
Sbjct: 644 SLSPSPERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAPSPSKRKRTPSD 703

Query: 327 RSSPT 341
           +S+ T
Sbjct: 704 KSAHT 708

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>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)|
           (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA
           protein kinase)
          Length = 1007

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 21/50 (42%), Positives = 26/50 (52%)
 Frame = +3

Query: 180 SPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLKRRARTR 329
           SP R+R S  P+RRR     SR       SP R  RSP  R   RR+++R
Sbjct: 437 SPTRRR-SRSPIRRR-----SRSPLRRSRSPRRRSRSPRRRDRSRRSKSR 480

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>UL47_HHV1F (P08313) Virion protein UL47 (82/81 kDa tegument protein)|
           (VMW82/81) (VP13/14)
          Length = 664

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 198 GSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLKRRARTRS 332
           G  PPVRRRR   R+R   A  + P  ++R+   R     AR++S
Sbjct: 57  GDEPPVRRRREGPRARRRRASEAPPTSHRRASRQRPGPDAARSQS 101

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>SFR11_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Arginine-rich 54|
           kDa nuclear protein) (p54)
          Length = 484

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +3

Query: 174 SPSPQRKRGSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLKRRARTRSS 335
           S S  R+R +P   R RR+ +RSR      S   R  +SP  R    R R R S
Sbjct: 251 SRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRS 304

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>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)|
          Length = 633

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
 Frame = +3

Query: 174 SPSPQRKRGSPPPVRRRRAWTRSRPM*APGSS------PARNQR 287
           +P P R RG+PPP  R     R  P+  P  S      PA+ QR
Sbjct: 511 APPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQR 554

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>BAG3_MOUSE (Q9JLV1) BAG family molecular chaperone regulator 3 (BCL-2-binding|
           athanogene-3) (BAG-3) (Bcl-2-binding protein Bis)
          Length = 577

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 201 SPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLKRRARTRSSP 338
           SPPP  +      S P+  P  SPA +    PP+ +    +   SP
Sbjct: 360 SPPPAEKVEVKVSSAPIPCPSPSPAPSAVPSPPKNVAAEQKAAPSP 405

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>UL47_HHV11 (P10231) Virion protein UL47 (82/81 kDa tegument protein)|
           (VMW82/81) (VP13/14)
          Length = 693

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 198 GSPPPVRRRRAWTRSRPM*APGSSPARNQRSPPPRWLKRRARTRS 332
           G  PPVRRRR   R+R   A  + P  ++R+   R     AR++S
Sbjct: 57  GDEPPVRRRREGPRARRRRASEAPPTSHRRASRQRPGPDAARSQS 101

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>CD2L5_MOUSE (Q69ZA1) Cell division cycle 2-like protein kinase 5 (EC 2.7.11.22)|
           (CDC2-related protein kinase 5)
          Length = 1511

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
 Frame = +3

Query: 105 ISHFASDCISPRRGIYP*RS*TLSPSPQRKRGSPPPVRRRRAWTRSR---------PM*A 257
           +SH AS  +  R+   P    + SP  +R   SP P  RRR+ + SR            +
Sbjct: 328 VSHRASQSLRSRKSPSPAGGGS-SPYSRRLPRSPSPYSRRRSPSYSRHSSYERGGDVSPS 386

Query: 258 PGSSPA-RNQRSPPPRWLKRRARTRS 332
           P SS + R  RSP    L+R A++RS
Sbjct: 387 PYSSSSWRRSRSPYSPVLRRSAKSRS 412


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,699,918
Number of Sequences: 219361
Number of extensions: 658388
Number of successful extensions: 2726
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 2278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2587
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result