ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl01g06 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ421722.3|OSA421722 Oryza sativa (indica cultivar-group) mRNA for enhancer of zeste protein (ez1 gene) Length = 3133 Score = 111 bits (56), Expect = 2e-21 Identities = 211/262 (80%), Gaps = 3/262 (1%) Strand = Plus / Plus Query: 203 cccgcctcgcgtccatcagggagaagctggaggcaaacaggagggcgctgcagaagcaca 262 |||||||||| | |||| ||||| | ||||||| ||||||| |||||||||| ||||| Sbjct: 358 cccgcctcgccgcgatcaaggagagggtggaggcgaacaggaaggcgctgcaggtgcaca 417 Query: 263 cctgcggcctgttcgatgtggccgccaaggcggaggcggcgtcgaggggctctgagagca 322 | |||| |||||||| || ||||| |||||||| ||||||| ||||| | ||| || Sbjct: 418 cgtgcgctctgttcgacgtcgccgcggcggcggaggtggcgtcgcggggcgccgagggcg 477 Query: 323 gcaacgtgctgtcgcagctcgccgcggacggccagtccaggatcgttgggtggaacctag 382 |||||| |||||||| | ||| ||||| || || | |||| |||| |||||| || | Sbjct: 478 gcaacgcgctgtcgcggggcgcggcggaggggcactgcaggctcgtggggtgggactcgg 537 Query: 383 cgagagggtcgggggagagggaggttgtgcacgtgcaggaggagaacctgtccgccgacg 442 |||| ||| |||||||||||||| | ||||| |||||||||||||| ||| | || || Sbjct: 538 cgagcgggccgggggagagggagttggtgcatgtgcaggaggagaatctg---gtcgccg 594 Query: 443 ggacgctcgtgctctcaagctc 464 |||||||||||||||| ||||| Sbjct: 595 ggacgctcgtgctctcgagctc 616 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 107 gccccaagcggccggatcaggggc 130 ||||||||||||||||||| |||| Sbjct: 259 gccccaagcggccggatcaagggc 282
>gb|AF407010.1| Oryza sativa SET domain-containing protein (SET1) mRNA, complete cds Length = 2957 Score = 107 bits (54), Expect = 3e-20 Identities = 245/308 (79%), Gaps = 3/308 (0%) Strand = Plus / Plus Query: 157 gcgctccacgggaagctgacgcagatgaagcgccaaatccagcaggcccgcctcgcgtcc 216 ||||| |||||||||||| ||||| ||||||| || |||| |||||||||| | Sbjct: 115 gcgctgcacgggaagctggcgcagctgaagcgtcaggtccaatccacccgcctcgccgcg 174 Query: 217 atcagggagaagctggaggcaaacaggagggcgctgcagaagcacacctgcggcctgttc 276 |||| ||||| | ||||||| ||||||| |||||||||| |||||| |||| |||||| Sbjct: 175 atcaaggagagggtggaggcgaacaggaaggcgctgcaggtgcacacgtgcgctctgttc 234 Query: 277 gatgtggccgccaaggcggaggcggcgtcgaggggctctgagagcagcaacgtgctgtcg 336 || || ||||| |||||||| ||||||| ||||| | ||| || |||||| ||||||| Sbjct: 235 gacgtcgccgcggcggcggaggtggcgtcgcggggcgccgagggcggcaacgcgctgtcg 294 Query: 337 cagctcgccgcggacggccagtccaggatcgttgggtggaacctagcgagagggtcgggg 396 | | ||| ||||| || || |||| |||| |||||| || ||||| ||| ||||| Sbjct: 295 cggggcgcggcggaggggcaccgcaggttcgtggggtgggactcggcgagcgggccgggg 354 Query: 397 gagagggaggttgtgcacgtgcaggaggagaacctgtccgccgacgggacgctcgtgctc 456 ||||||||| | ||||| |||||||||||||| ||| | || |||||||||||||||| Sbjct: 355 gagagggagttggtgcatgtgcaggaggagaatctg---gtcgccgggacgctcgtgctc 411 Query: 457 tcaagctc 464 || ||||| Sbjct: 412 tcgagctc 419 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 107 gccccaagcggccggatcaggggc 130 ||||||||||||||||||| |||| Sbjct: 62 gccccaagcggccggatcaagggc 85
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 97.6 bits (49), Expect = 3e-17 Identities = 189/235 (80%), Gaps = 3/235 (1%) Strand = Plus / Minus Query: 230 tggaggcaaacaggagggcgctgcagaagcacacctgcggcctgttcgatgtggccgcca 289 ||||||| ||||||| |||||||||| |||||| |||| |||||||| || ||||| Sbjct: 10931031 tggaggcgaacaggaaggcgctgcaggtgcacacgtgcgctctgttcgacgtcgccgcgg 10930972 Query: 290 aggcggaggcggcgtcgaggggctctgagagcagcaacgtgctgtcgcagctcgccgcgg 349 |||||||| ||||||| ||||| | ||| || |||||| |||||||| | ||| |||| Sbjct: 10930971 cggcggaggtggcgtcgcggggcgccgagggcggcaacgcgctgtcgcggggcgcggcgg 10930912 Query: 350 acggccagtccaggatcgttgggtggaacctagcgagagggtcgggggagagggaggttg 409 | || || |||| |||| |||||| || ||||| ||| |||||||||||||| | | Sbjct: 10930911 aggggcaccgcaggttcgtggggtgggactcggcgagcgggccgggggagagggagttgg 10930852 Query: 410 tgcacgtgcaggaggagaacctgtccgccgacgggacgctcgtgctctcaagctc 464 |||| |||||||||||||| ||| | || |||||||||||||||||| ||||| Sbjct: 10930851 tgcatgtgcaggaggagaatctg---gtcgccgggacgctcgtgctctcgagctc 10930800 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 157 gcgctccacgggaagctgacgcagatgaagcg 188 ||||| |||||||||||| ||||| ||||||| Sbjct: 10931225 gcgctgcacgggaagctggcgcagctgaagcg 10931194
>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05, from chromosome 3, complete sequence Length = 127348 Score = 97.6 bits (49), Expect = 3e-17 Identities = 189/235 (80%), Gaps = 3/235 (1%) Strand = Plus / Plus Query: 230 tggaggcaaacaggagggcgctgcagaagcacacctgcggcctgttcgatgtggccgcca 289 ||||||| ||||||| |||||||||| |||||| |||| |||||||| || ||||| Sbjct: 49998 tggaggcgaacaggaaggcgctgcaggtgcacacgtgcgctctgttcgacgtcgccgcgg 50057 Query: 290 aggcggaggcggcgtcgaggggctctgagagcagcaacgtgctgtcgcagctcgccgcgg 349 |||||||| ||||||| ||||| | ||| || |||||| |||||||| | ||| |||| Sbjct: 50058 cggcggaggtggcgtcgcggggcgccgagggcggcaacgcgctgtcgcggggcgcggcgg 50117 Query: 350 acggccagtccaggatcgttgggtggaacctagcgagagggtcgggggagagggaggttg 409 | || || |||| |||| |||||| || ||||| ||| |||||||||||||| | | Sbjct: 50118 aggggcaccgcaggttcgtggggtgggactcggcgagcgggccgggggagagggagttgg 50177 Query: 410 tgcacgtgcaggaggagaacctgtccgccgacgggacgctcgtgctctcaagctc 464 |||| |||||||||||||| ||| | || |||||||||||||||||| ||||| Sbjct: 50178 tgcatgtgcaggaggagaatctg---gtcgccgggacgctcgtgctctcgagctc 50229 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 157 gcgctccacgggaagctgacgcagatgaagcg 188 ||||| |||||||||||| ||||| ||||||| Sbjct: 49804 gcgctgcacgggaagctggcgcagctgaagcg 49835
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 97.6 bits (49), Expect = 3e-17 Identities = 189/235 (80%), Gaps = 3/235 (1%) Strand = Plus / Minus Query: 230 tggaggcaaacaggagggcgctgcagaagcacacctgcggcctgttcgatgtggccgcca 289 ||||||| ||||||| |||||||||| |||||| |||| |||||||| || ||||| Sbjct: 10929132 tggaggcgaacaggaaggcgctgcaggtgcacacgtgcgctctgttcgacgtcgccgcgg 10929073 Query: 290 aggcggaggcggcgtcgaggggctctgagagcagcaacgtgctgtcgcagctcgccgcgg 349 |||||||| ||||||| ||||| | ||| || |||||| |||||||| | ||| |||| Sbjct: 10929072 cggcggaggtggcgtcgcggggcgccgagggcggcaacgcgctgtcgcggggcgcggcgg 10929013 Query: 350 acggccagtccaggatcgttgggtggaacctagcgagagggtcgggggagagggaggttg 409 | || || |||| |||| |||||| || ||||| ||| |||||||||||||| | | Sbjct: 10929012 aggggcaccgcaggttcgtggggtgggactcggcgagcgggccgggggagagggagttgg 10928953 Query: 410 tgcacgtgcaggaggagaacctgtccgccgacgggacgctcgtgctctcaagctc 464 |||| |||||||||||||| ||| | || |||||||||||||||||| ||||| Sbjct: 10928952 tgcatgtgcaggaggagaatctg---gtcgccgggacgctcgtgctctcgagctc 10928901 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 157 gcgctccacgggaagctgacgcagatgaagcg 188 ||||| |||||||||||| ||||| ||||||| Sbjct: 10929326 gcgctgcacgggaagctggcgcagctgaagcg 10929295
>gb|AF443597.1| Zea mays enhancer of zeste-like protein 2 (mez2) mRNA, complete cds Length = 3047 Score = 60.0 bits (30), Expect = 7e-06 Identities = 117/146 (80%) Strand = Plus / Plus Query: 205 cgcctcgcgtccatcagggagaagctggaggcaaacaggagggcgctgcagaagcacacc 264 |||||||||| ||||| |||||| |||||| ||||||| ||||||||| |||| || Sbjct: 171 cgcctcgcgtacatcaaggagaaattggaggtgaacaggaaaacgctgcagaggcactcc 230 Query: 265 tgcggcctgttcgatgtggccgccaaggcggaggcggcgtcgaggggctctgagagcagc 324 ||| |||||||| ||||| || |||||||| ||||||||||||| | || || || Sbjct: 231 tgctcgctgttcgacgtggcagcggcggcggaggtggcgtcgaggggcaccgatggcggc 290 Query: 325 aacgtgctgtcgcagctcgccgcgga 350 |||| |||||| |||| ||| ||||| Sbjct: 291 aacgcgctgtcacagcgcgcggcgga 316
>gb|AF443598.1| Zea mays enhancer of zeste-like protein 3 (mez3) mRNA, complete cds Length = 3149 Score = 58.0 bits (29), Expect = 3e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 216 catcagggagaagctggaggcaaacaggagggcgctgcagaagcacacctgcggcctgtt 275 ||||| |||||| ||||||| ||||||| | ||||||||| |||| ||||| ||||| Sbjct: 212 catcaaggagaaattggaggctaacaggaagacgctgcagaggcactcctgctcgctgtt 271 Query: 276 cgatgtggccgccaaggcggaggcggcgtcgaggggc 312 ||| ||||| || |||||||| ||||||||||||| Sbjct: 272 cgacgtggcagcggcggcggaggtggcgtcgaggggc 308 Score = 50.1 bits (25), Expect = 0.007 Identities = 60/71 (84%), Gaps = 3/71 (4%) Strand = Plus / Plus Query: 394 ggggagagggaggttgtgcacgtgcaggaggagaacctgtccgccgacgggacgctcgtg 453 ||||||||||| || ||| || ||||||||||||||||| || ||||||||||||| Sbjct: 390 ggggagagggacgtggtgtacatgcaggaggagaacctg---gcgtccgggacgctcgtg 446 Query: 454 ctctcaagctc 464 ||||| ||||| Sbjct: 447 ctctcgagctc 457 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 ggcctccgactcctcctccca 98 ||||||||||||||||||||| Sbjct: 74 ggcctccgactcctcctccca 94
>gb|AC124228.16| Mus musculus chromosome 5, clone RP23-345O14, complete sequence Length = 219244 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 226 aagctggaggcaaacaggaggg 247 |||||||||||||||||||||| Sbjct: 158531 aagctggaggcaaacaggaggg 158552
>gb|AC132102.3| Mus musculus BAC clone RP24-360K9 from chromosome 5, complete sequence Length = 144545 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 226 aagctggaggcaaacaggaggg 247 |||||||||||||||||||||| Sbjct: 8616 aagctggaggcaaacaggaggg 8637
>gb|AC110520.12| Mus musculus chromosome 7, clone RP23-24N16, complete sequence Length = 248540 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ccgactcctcctcccaccggg 103 ||||||||||||||||||||| Sbjct: 127475 ccgactcctcctcccaccggg 127495
>ref|XM_483607.1| Oryza sativa (japonica cultivar-group), mRNA Length = 792 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 283 gccgccaaggcggaggcggcg 303 ||||||||||||||||||||| Sbjct: 152 gccgccaaggcggaggcggcg 132
>gb|AC107760.9| Mus musculus chromosome 15, clone RP23-189K4, complete sequence Length = 178900 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 415 gtgcaggaggagaacctgtcc 435 ||||||||||||||||||||| Sbjct: 107744 gtgcaggaggagaacctgtcc 107764
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 gccgccaaggcggaggcggcg 303 ||||||||||||||||||||| Sbjct: 27216566 gccgccaaggcggaggcggcg 27216586
>dbj|AP003914.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1521_G02 Length = 117964 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 gccgccaaggcggaggcggcg 303 ||||||||||||||||||||| Sbjct: 117599 gccgccaaggcggaggcggcg 117619
>dbj|AP004632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0623F08 Length = 154540 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 gccgccaaggcggaggcggcg 303 ||||||||||||||||||||| Sbjct: 39769 gccgccaaggcggaggcggcg 39789
>gb|AC154874.9| Mus musculus chromosome 15, clone RP23-227M7, complete sequence Length = 206926 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 415 gtgcaggaggagaacctgtcc 435 ||||||||||||||||||||| Sbjct: 189684 gtgcaggaggagaacctgtcc 189664
>dbj|AB055327.1| Macaca fascicularis brain cDNA, clone:QflA-10461 Length = 1567 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 214 tccatcagggagaagctggag 234 ||||||||||||||||||||| Sbjct: 753 tccatcagggagaagctggag 773
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence Length = 1130447 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 cggaggcggcgtcgaggggc 312 |||||||||||||||||||| Sbjct: 444958 cggaggcggcgtcgaggggc 444939
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome Length = 3481691 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 tcctcctcccaccgggacgg 107 |||||||||||||||||||| Sbjct: 1662139 tcctcctcccaccgggacgg 1662120
>gb|AC186369.1| Pan troglodytes chromosome UNKNOWN clone CH251-21L17, complete sequence Length = 204239 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 gcagatgaagcgccaaatccagca 200 |||||||||||||||||| ||||| Sbjct: 19928 gcagatgaagcgccaaattcagca 19951
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 330 gctgtcgcagctcgccgcggacgg 353 ||||||||||||||||||| |||| Sbjct: 654057 gctgtcgcagctcgccgcgtacgg 654034
>ref|NM_182996.2| Mus musculus zinc finger protein 692 (Zfp692), mRNA Length = 2308 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 271 ctgttcgatgtggccgccaaggcggaggcggc 302 |||||| ||||||||||| ||||||| ||||| Sbjct: 336 ctgttccatgtggccgcccaggcggatgcggc 305
>gb|AC024730.7| Homo sapiens BAC clone RP11-422E4 from 7, complete sequence Length = 151198 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 agaagctggaggcaaacagg 243 |||||||||||||||||||| Sbjct: 30138 agaagctggaggcaaacagg 30157
>gb|AC133648.3| Mus musculus BAC clone RP23-291B1 from chromosome 7, complete sequence Length = 207234 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 gtgcaggaggagaacctgtc 434 |||||||||||||||||||| Sbjct: 181501 gtgcaggaggagaacctgtc 181520
>ref|XM_842965.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0361) partial mRNA Length = 1260 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cggaggcggcgtcgaggggc 312 |||||||||||||||||||| Sbjct: 227 cggaggcggcgtcgaggggc 246
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 cggcctgcggcggctcgcgc 68 |||||||||||||||||||| Sbjct: 853675 cggcctgcggcggctcgcgc 853694
>gb|AC157815.9| Mus musculus chromosome 3, clone RP24-175G5, complete sequence Length = 170361 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 ggggagagggaggttgtgca 413 |||||||||||||||||||| Sbjct: 117061 ggggagagggaggttgtgca 117042
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 330 gctgtcgcagctcgccgcggacgg 353 ||||||||||||||||||| |||| Sbjct: 1973172 gctgtcgcagctcgccgcgtacgg 1973149
>emb|AL845463.7| Mouse DNA sequence from clone RP23-386K17 on chromosome 11 Contains a novel pseudogene, three novel genes and three CpG islands, complete sequence Length = 59235 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 271 ctgttcgatgtggccgccaaggcggaggcggc 302 |||||| ||||||||||| ||||||| ||||| Sbjct: 7969 ctgttccatgtggccgcccaggcggatgcggc 7938
>dbj|AK154896.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630110L23 product:hypothetical protein, full insert sequence Length = 2423 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 271 ctgttcgatgtggccgccaaggcggaggcggc 302 |||||| ||||||||||| ||||||| ||||| Sbjct: 312 ctgttccatgtggccgcccaggcggatgcggc 281
>gb|BC055041.1| Mus musculus zinc finger protein 692, mRNA (cDNA clone MGC:62804 IMAGE:6490467), complete cds Length = 2308 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 271 ctgttcgatgtggccgccaaggcggaggcggc 302 |||||| ||||||||||| ||||||| ||||| Sbjct: 336 ctgttccatgtggccgcccaggcggatgcggc 305
>dbj|AK170358.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630101B12 product:weakly similar to Zinc finger protein 91 [Mus musculus], full insert sequence Length = 1780 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 271 ctgttcgatgtggccgccaaggcggaggcggc 302 |||||| ||||||||||| ||||||| ||||| Sbjct: 208 ctgttccatgtggccgcccaggcggatgcggc 177
>dbj|AK170229.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630034F15 product:hypothetical Zn-finger, C2H2 type containing protein, full insert sequence Length = 2234 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 271 ctgttcgatgtggccgccaaggcggaggcggc 302 |||||| ||||||||||| ||||||| ||||| Sbjct: 373 ctgttccatgtggccgcccaggcggatgcggc 342
>dbj|AK080545.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730082L10 product:hypothetical protein, full insert sequence Length = 1141 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 271 ctgttcgatgtggccgccaaggcggaggcggc 302 |||||| ||||||||||| ||||||| ||||| Sbjct: 372 ctgttccatgtggccgcccaggcggatgcggc 341
>gb|AC007707.14| Homo sapiens chromosome 11 clone rp11-442e11 map 11q23, complete sequence Length = 188963 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 gcagatgaagcgccaaatccagca 200 |||||||||||||||||| ||||| Sbjct: 13528 gcagatgaagcgccaaattcagca 13551
>dbj|AK031177.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length enriched library, clone:5930422I09 product:weakly similar to zinc finger protein (fragment) [Mus musculus], full insert sequence Length = 2191 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 271 ctgttcgatgtggccgccaaggcggaggcggc 302 |||||| ||||||||||| ||||||| ||||| Sbjct: 310 ctgttccatgtggccgcccaggcggatgcggc 279
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 330 gctgtcgcagctcgccgcggacgg 353 ||||||||||||||||||| |||| Sbjct: 828667 gctgtcgcagctcgccgcgtacgg 828690
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 tggcctccgactcctcctcc 96 |||||||||||||||||||| Sbjct: 25242103 tggcctccgactcctcctcc 25242084
>gb|AE004476.1| Pseudomonas aeruginosa PAO1, section 37 of 529 of the complete genome Length = 11930 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 gcaggaggtggtcggcctgc 56 |||||||||||||||||||| Sbjct: 7605 gcaggaggtggtcggcctgc 7586
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 261 cacctgcggcctgttcgatgtggc 284 |||| ||||||||||||||||||| Sbjct: 1327462 cacccgcggcctgttcgatgtggc 1327439
>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0616D06 Length = 153800 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 tggcctccgactcctcctcc 96 |||||||||||||||||||| Sbjct: 58774 tggcctccgactcctcctcc 58755
>dbj|AP006216.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-87O6, complete sequence Length = 177334 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 gcagatgaagcgccaaatccagca 200 |||||||||||||||||| ||||| Sbjct: 16913 gcagatgaagcgccaaattcagca 16936
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 330 gctgtcgcagctcgccgcggacgg 353 ||||||||||||||||||| |||| Sbjct: 1124636 gctgtcgcagctcgccgcgtacgg 1124659
>gb|AC002037.1|AC002037 Human Chromosome 11 Overlapping Cosmids cSRL72g7 and cSRL140b8, complete sequence Length = 53897 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 gcagatgaagcgccaaatccagca 200 |||||||||||||||||| ||||| Sbjct: 29696 gcagatgaagcgccaaattcagca 29673
>gb|U73648.1|HSU73648 Human chromosome 11 72g7 cosmid, complete sequence Length = 36565 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 gcagatgaagcgccaaatccagca 200 |||||||||||||||||| ||||| Sbjct: 12371 gcagatgaagcgccaaattcagca 12348
>dbj|D21201.1|PSEFD P. putida DNA for formaldehyde dehydrogenase, complete cds Length = 1666 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 gagagggtcgggggagaggg 403 |||||||||||||||||||| Sbjct: 107 gagagggtcgggggagaggg 126 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,502,363 Number of Sequences: 3902068 Number of extensions: 3502363 Number of successful extensions: 77445 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76703 Number of HSP's gapped (non-prelim): 737 length of query: 479 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 457 effective length of database: 17,147,199,772 effective search space: 7836270295804 effective search space used: 7836270295804 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
