>CRY2_ARATH (Q96524) Cryptochrome-2 (Blue light photoreceptor)|
          Length = 612

 Score = 31.6 bits (70), Expect = 0.83
 Identities = 11/14 (78%), Positives = 14/14 (100%)
 Frame = +3

Query: 387 RTVVWFRRDLRVED 428
           +T+VWFRRDLR+ED
Sbjct: 6   KTIVWFRRDLRIED 19

>PHR1_SINAL (P40115) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 501

 Score = 31.6 bits (70), Expect = 0.83
 Identities = 11/14 (78%), Positives = 14/14 (100%)
 Frame = +3

Query: 387 RTVVWFRRDLRVED 428
           +T+VWFRRDLR+ED
Sbjct: 6   KTIVWFRRDLRIED 19

>PEPB_STRA5 (Q8E0C9) Group B oligopeptidase pepB (EC 3.4.24.-)|
          Length = 601

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 6   HHHPTSQQKILQKSFLYEKEGEILVRFTPHHFP 104
           HH+ +++Q  L  +F+ E+  E L++   HH P
Sbjct: 247 HHYQSARQSALSANFIPEEVYETLIKTVNHHLP 279

>PEPB_STRA3 (Q53778) Group B oligopeptidase pepB (EC 3.4.24.-)|
          Length = 601

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 6   HHHPTSQQKILQKSFLYEKEGEILVRFTPHHFP 104
           HH+ +++Q  L  +F+ E+  E L++   HH P
Sbjct: 247 HHYQSARQSALSANFIPEEVYETLIKTVNHHLP 279

>MURC_LACJO (P61680) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 437

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 9   HHPTSQQKILQKSFLYEKEGEILVRFTPHHFPCTGTEETVPAQFIPRFQEILADPGKS 182
           HHPT  +  +Q +     + E++V F PH F  T        ++   F+EIL D  K+
Sbjct: 321 HHPTEMRATIQAARQKFPDKELVVVFQPHTFSRT-------KKYQKDFEEILRDVDKA 371

>CRY1_ARATH (Q43125) Cryptochrome-1 (Blue light photoreceptor)|
          Length = 681

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +3

Query: 390 TVVWFRRDLRVED 428
           ++VWFRRDLRVED
Sbjct: 14  SIVWFRRDLRVED 26

>RNPH_RHIME (Q92SK2) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 239

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 39  QKSFLYEKEGEILVRFTPHHFPCTGT-EETVPA 134
           ++SF    EG  LVRF   H  CT + EE VPA
Sbjct: 17  ERSFSKHAEGSCLVRFGDTHVLCTASLEEKVPA 49

>Y403_RALSO (Q8Y2D3) UPF0042 protein RSc0403|
          Length = 296

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +3

Query: 120 ETVPAQFIPRFQEILADPGKSC*ATHTGAPTKFAS*Q----LPELLLLVIQERQGNELF 284
           + +PAQFIP     LAD G     TH G  T   S +    +PE +  + +E     LF
Sbjct: 30  DNLPAQFIPELARYLADQG----YTHLGVATDIRSRESLRKVPETITQLRKEHDVRMLF 84

>TRPH_SALTY (O54453) Protein trpH|
          Length = 293

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -2

Query: 254 NEQQQLRELS*SKLCWRSGVGSSTRFAWIGEDFLEP--WNELGRNGFLSAGAWEMMWSKS 81
           NE+ QL  L+     W S          +G DF +P  W ELGR  +L AG  E +W   
Sbjct: 238 NERTQLATLARQHHLWAS----------LGSDFHQPCPWIELGRKLWLPAGV-EGVWQTW 286

Query: 80  DQ 75
           +Q
Sbjct: 287 EQ 288

>MNTH_MYCBO (O69443) Probable manganese transport protein mntH (BRAMP)|
          Length = 684

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = +3

Query: 240 LLLLVIQERQGNELFPWVIS*LLVV 314
           LLLL IQ+R+G  LF  VI+ LL+V
Sbjct: 410 LLLLTIQDRRGQRLFERVITALLLV 434

>MNTH_MYCTU (O05916) Probable manganese transport protein mntH|
          Length = 428

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = +3

Query: 240 LLLLVIQERQGNELFPWVIS*LLVV 314
           LLLL IQ+R+G  LF  VI+ LL+V
Sbjct: 154 LLLLTIQDRRGQRLFERVITALLLV 178

>MURC_LACAC (Q5FIS8) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 437

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +3

Query: 9   HHPTSQQKILQKSFLYEKEGEILVRFTPHHFPCTGTEETVPAQFIPRFQEILADPGKS 182
           HHPT  +  +Q +     + +++V F PH F  T        ++   F+EIL D  K+
Sbjct: 321 HHPTEMRATIQAARQKFPDKKLVVVFQPHTFSRT-------KKYQKDFEEILRDVDKA 371

>EBSC_ENTFA (P36922) Protein ebsC|
          Length = 164

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 17  HLPAKNTPEIFFVRKRRGNIGQIYSTSFPMHRH*GNRSGPVHSTVPGN 160
           HL A++  E   + K     G+I+ T   +    GN++GPV + +PGN
Sbjct: 34  HLSAESVAESLGIEK-----GRIFKTLVTV----GNKTGPVVAVIPGN 72


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,458,175
Number of Sequences: 219361
Number of extensions: 1368187
Number of successful extensions: 4275
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4274
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)