Clone Information

BLAST Search Result

Clone Name	bastl01g05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|DQ201150.1\| Hordeum vulgare subsp. vulgare cultivar Morex cry...	846	0.0
2	gb\|DQ201149.1\| Hordeum vulgare subsp. vulgare cultivar Dicktoo c...	846	0.0
3	gb\|DQ201151.1\| Hordeum vulgare subsp. vulgare cultivar Kompolti ...	839	0.0
4	ref\|XM_466372.1\| Oryza sativa (japonica cultivar-group), mRNA	80	7e-12
5	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	80	7e-12
6	dbj\|AP005699.3\| Oryza sativa (japonica cultivar-group) genomic D...	80	7e-12
7	dbj\|AK064910.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	80	7e-12
8	dbj\|AB073546.1\| Oryza sativa (japonica cultivar-group) OsCRY1a m...	80	7e-12
9	dbj\|AB024337.1\| Oryza sativa (japonica cultivar-group) mRNA for ...	80	7e-12
10	ref\|XM_472681.1\| Oryza sativa (japonica cultivar-group), predic...	52	0.002
11	emb\|AL606615.4\|OSJN00048 Oryza sativa genomic DNA, chromosome 4,...	52	0.002
12	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
13	dbj\|AK072182.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.002
14	dbj\|AB073547.2\| Oryza sativa (japonica cultivar-group) OsCRY1b m...	52	0.002
15	gb\|L07561.2\|CREDNAPL Chlamydomonas reinhardtii CPH1 (CPH1) gene,...	50	0.006
16	gb\|BC081030.1\| Xenopus laevis MGC81689 protein, mRNA (cDNA clone...	42	1.5
17	emb\|CT025605.11\| Mouse DNA sequence from clone RP23-259D11 on ch...	42	1.5
18	gb\|AC161585.2\| Mus musculus BAC clone RP24-506J9 from chromosome...	42	1.5
19	emb\|BX005232.7\| Zebrafish DNA sequence from clone CH211-172G24, ...	42	1.5
20	ref\|XM_983845.1\| PREDICTED: Mus musculus hypothetical LOC626575 ...	40	5.8
21	ref\|XM_899431.2\| PREDICTED: Mus musculus hypothetical LOC626575 ...	40	5.8
22	ref\|XM_992478.1\| PREDICTED: Mus musculus hypothetical protein LO...	40	5.8
23	gb\|AC132367.3\| Mus musculus BAC clone RP23-465K21 from chromosom...	40	5.8
24	gb\|AC098724.3\| Mus musculus BAC clone RP23-3D14 from 4, complete...	40	5.8
25	gb\|AC093461.4\| Homo sapiens BAC clone RP11-764P14 from 7, comple...	40	5.8
26	emb\|AL445237.16\| Human DNA sequence from clone RP13-238F13 on ch...	40	5.8
27	emb\|AL390318.20\| Human DNA sequence from clone RP11-142L16 on ch...	40	5.8
28	emb\|AL390957.14\| Human DNA sequence from clone RP11-417A21 on ch...	40	5.8
29	emb\|AL133344.28\| Human DNA sequence from clone RP5-1158H2 on chr...	40	5.8
30	emb\|AL096799.6\|HSJ764O22 Human DNA sequence from clone RP4-764O2...	40	5.8
31	dbj\|AK030136.1\| Mus musculus adult male testis cDNA, RIKEN full-...	40	5.8
32	gb\|AC159463.1\| Pan troglodytes BAC clone CH251-413O15 from chrom...	40	5.8
33	gb\|AC063943.23\| Homo sapiens 12 BAC RP11-18C24 (Roswell Park Can...	40	5.8
34	emb\|BX005171.9\| Mouse DNA sequence from clone RP23-234H6 on chro...	40	5.8
35	ref\|NM_208437.1\| Eremothecium gossypii ABR137Wp (ABR137W), mRNA	40	5.8
36	emb\|Z33612.1\|ZMPHMU2 Z.mays (W22) phosphoglycerate mutase gene e...	40	5.8
37	gb\|AC161010.3\| Pan troglodytes BAC clone CH251-501B6 from chromo...	40	5.8
38	gb\|AE016815.2\| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...	40	5.8
39	emb\|AL606915.12\| Mouse DNA sequence from clone RP23-185C16 on ch...	40	5.8
40	emb\|AL645793.14\| Mouse DNA sequence from clone RP23-480H2 on chr...	40	5.8

>gb|DQ201150.1| Hordeum vulgare subsp. vulgare cultivar Morex cryptochrome 1a
           (Cry1a) gene, complete cds
          Length = 3808

 Score =  846 bits (427), Expect = 0.0
 Identities = 427/427 (100%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaacaccaccatcccacctcccagcaaaaaatactccagaaatcttttttgtacgaaaaa 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaacaccaccatcccacctcccagcaaaaaatactccagaaatcttttttgtacgaaaaa 60

                                                                       
Query: 63  gaaggggaaatattggtcagatttactccacatcatttcccatgcaccggcactgaggaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaaggggaaatattggtcagatttactccacatcatttcccatgcaccggcactgaggaa 120

                                                                       
Query: 123 accgttccggcccagttcattccacggttccaggaaatcctcgccgatccaggcaaatct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accgttccggcccagttcattccacggttccaggaaatcctcgccgatccaggcaaatct 180

                                                                       
Query: 183 tgttgagctacccacaccggagcgccaacaaagtttgcttcatgacagctccctgagctg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgttgagctacccacaccggagcgccaacaaagtttgcttcatgacagctccctgagctg 240

                                                                       
Query: 243 ctgctgctcgttatccaagagaggcaaggcaacgagctttttccttgggtaattagctag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctgctgctcgttatccaagagaggcaaggcaacgagctttttccttgggtaattagctag 300

                                                                       
Query: 303 ctgctcgtcgttgcagaaaggccttagtgccgagtcatgtcagcgtcgctgtcgatgagc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctgctcgtcgttgcagaaaggccttagtgccgagtcatgtcagcgtcgctgtcgatgagc 360

                                                                       
Query: 363 ggcggagccggggaggctgcgacgcggacggttgtgtggttcaggcgggacctgcgcgtg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggcggagccggggaggctgcgacgcggacggttgtgtggttcaggcgggacctgcgcgtg 420

                  
Query: 423 gaggaca 429
           |||||||
Sbjct: 421 gaggaca 427

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>gb|DQ201149.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo cryptochrome 1a
           (Cry1a) gene, complete cds
          Length = 3808

 Score =  846 bits (427), Expect = 0.0
 Identities = 427/427 (100%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaacaccaccatcccacctcccagcaaaaaatactccagaaatcttttttgtacgaaaaa 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaacaccaccatcccacctcccagcaaaaaatactccagaaatcttttttgtacgaaaaa 60

                                                                       
Query: 63  gaaggggaaatattggtcagatttactccacatcatttcccatgcaccggcactgaggaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaaggggaaatattggtcagatttactccacatcatttcccatgcaccggcactgaggaa 120

                                                                       
Query: 123 accgttccggcccagttcattccacggttccaggaaatcctcgccgatccaggcaaatct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accgttccggcccagttcattccacggttccaggaaatcctcgccgatccaggcaaatct 180

                                                                       
Query: 183 tgttgagctacccacaccggagcgccaacaaagtttgcttcatgacagctccctgagctg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgttgagctacccacaccggagcgccaacaaagtttgcttcatgacagctccctgagctg 240

                                                                       
Query: 243 ctgctgctcgttatccaagagaggcaaggcaacgagctttttccttgggtaattagctag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctgctgctcgttatccaagagaggcaaggcaacgagctttttccttgggtaattagctag 300

                                                                       
Query: 303 ctgctcgtcgttgcagaaaggccttagtgccgagtcatgtcagcgtcgctgtcgatgagc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctgctcgtcgttgcagaaaggccttagtgccgagtcatgtcagcgtcgctgtcgatgagc 360

                                                                       
Query: 363 ggcggagccggggaggctgcgacgcggacggttgtgtggttcaggcgggacctgcgcgtg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggcggagccggggaggctgcgacgcggacggttgtgtggttcaggcgggacctgcgcgtg 420

                  
Query: 423 gaggaca 429
           |||||||
Sbjct: 421 gaggaca 427

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>gb|DQ201151.1| Hordeum vulgare subsp. vulgare cultivar Kompolti korai cryptochrome
           1a (Cry1a) gene, complete cds
          Length = 3808

 Score =  839 bits (423), Expect = 0.0
 Identities = 426/427 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaacaccaccatcccacctcccagcaaaaaatactccagaaatcttttttgtacgaaaaa 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaacaccaccatcccacctcccagcaaaaaatactccagaaatcttttttgtacgaaaaa 60

                                                                       
Query: 63  gaaggggaaatattggtcagatttactccacatcatttcccatgcaccggcactgaggaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaaggggaaatattggtcagatttactccacatcatttcccatgcaccggcactgaggaa 120

                                                                       
Query: 123 accgttccggcccagttcattccacggttccaggaaatcctcgccgatccaggcaaatct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accgttccggcccagttcattccacggttccaggaaatcctcgccgatccaggcaaatct 180

                                                                       
Query: 183 tgttgagctacccacaccggagcgccaacaaagtttgcttcatgacagctccctgagctg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgttgagctacccacaccggagcgccaacaaagtttgcttcatgacagctccctgagctg 240

                                                                       
Query: 243 ctgctgctcgttatccaagagaggcaaggcaacgagctttttccttgggtaattagctag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctgctgctcgttatccaagagaggcaaggcaacgagctttttccttgggtaattagctag 300

                                                                       
Query: 303 ctgctcgtcgttgcagaaaggccttagtgccgagtcatgtcagcgtcgctgtcgatgagc 362
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctgctcgtcgtcgcagaaaggccttagtgccgagtcatgtcagcgtcgctgtcgatgagc 360

                                                                       
Query: 363 ggcggagccggggaggctgcgacgcggacggttgtgtggttcaggcgggacctgcgcgtg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggcggagccggggaggctgcgacgcggacggttgtgtggttcaggcgggacctgcgcgtg 420

                  
Query: 423 gaggaca 429
           |||||||
Sbjct: 421 gaggaca 427

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>ref|XM_466372.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2832

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                       
Query: 386 gcggacggttgtgtggttcaggcgggacctgcgcgtggaggaca 429
           ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 442 gcggacggtggtgtggttcaggcgggacctgcgcgtggaggaca 485

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                            
Query: 386      gcggacggttgtgtggttcaggcgggacctgcgcgtggaggaca 429
                ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 21996377 gcggacggtggtgtggttcaggcgggacctgcgcgtggaggaca 21996420

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>dbj|AP005699.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0046L23
          Length = 100041

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                         
Query: 386   gcggacggttgtgtggttcaggcgggacctgcgcgtggaggaca 429
             ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 44999 gcggacggtggtgtggttcaggcgggacctgcgcgtggaggaca 45042

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>dbj|AK064910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M07, full
           insert sequence
          Length = 2833

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                       
Query: 386 gcggacggttgtgtggttcaggcgggacctgcgcgtggaggaca 429
           ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 442 gcggacggtggtgtggttcaggcgggacctgcgcgtggaggaca 485

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>dbj|AB073546.1| Oryza sativa (japonica cultivar-group) OsCRY1a mRNA for
           cryptochrome 1a, complete cds
          Length = 2587

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                       
Query: 386 gcggacggttgtgtggttcaggcgggacctgcgcgtggaggaca 429
           ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 117 gcggacggtggtgtggttcaggcgggacctgcgcgtggaggaca 160

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>dbj|AB024337.1| Oryza sativa (japonica cultivar-group) mRNA for blue-light
           photoreceptor, complete cds
          Length = 2797

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                       
Query: 386 gcggacggttgtgtggttcaggcgggacctgcgcgtggaggaca 429
           ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 391 gcggacggtggtgtggttcaggcgggacctgcgcgtggaggaca 434

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>ref|XM_472681.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2082

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 388 ggacggttgtgtggttcaggcgggacctgcgcgtggaggaca 429
           ||||||| |||||||||||| |||||||| | ||||||||||
Sbjct: 35  ggacggtggtgtggttcaggagggacctgagggtggaggaca 76

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>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14,
              complete sequence
          Length = 175698

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                        
Query: 388    ggacggttgtgtggttcaggcgggacctgcgcgtggaggaca 429
              ||||||| |||||||||||| |||||||| | ||||||||||
Sbjct: 128763 ggacggtggtgtggttcaggagggacctgagggtggaggaca 128804

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 388      ggacggttgtgtggttcaggcgggacctgcgcgtggaggaca 429
                ||||||| |||||||||||| |||||||| | ||||||||||
Sbjct: 22525008 ggacggtggtgtggttcaggagggacctgagggtggaggaca 22525049

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>dbj|AK072182.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146D14, full
           insert sequence
          Length = 4629

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 388 ggacggttgtgtggttcaggcgggacctgcgcgtggaggaca 429
           ||||||| |||||||||||| |||||||| | ||||||||||
Sbjct: 351 ggacggtggtgtggttcaggagggacctgagggtggaggaca 392

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>dbj|AB073547.2| Oryza sativa (japonica cultivar-group) OsCRY1b mRNA for
           cryptochrome 1b, complete cds
          Length = 2904

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 388 ggacggttgtgtggttcaggcgggacctgcgcgtggaggaca 429
           ||||||| |||||||||||| |||||||| | ||||||||||
Sbjct: 457 ggacggtggtgtggttcaggagggacctgagggtggaggaca 498

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>gb|L07561.2|CREDNAPL Chlamydomonas reinhardtii CPH1 (CPH1) gene, complete cds
          Length = 7203

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                 
Query: 393  gttgtgtggttcaggcgggacctgcgcgtggaggaca 429
            |||||||||||| |||||||||| |||||||| ||||
Sbjct: 1353 gttgtgtggttccggcgggaccttcgcgtggacgaca 1389

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>gb|BC081030.1| Xenopus laevis MGC81689 protein, mRNA (cDNA clone MGC:81689
            IMAGE:6864769), complete cds
          Length = 3197

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 64   aaggggaaatattggtcagat 84
            |||||||||||||||||||||
Sbjct: 2058 aaggggaaatattggtcagat 2078

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>emb|CT025605.11| Mouse DNA sequence from clone RP23-259D11 on chromosome 13, complete
              sequence
          Length = 188616

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 212    aaagtttgcttcatgacagct 232
              |||||||||||||||||||||
Sbjct: 156732 aaagtttgcttcatgacagct 156712

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>gb|AC161585.2| Mus musculus BAC clone RP24-506J9 from chromosome 13, complete sequence
          Length = 211181

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 212    aaagtttgcttcatgacagct 232
              |||||||||||||||||||||
Sbjct: 112823 aaagtttgcttcatgacagct 112803

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>emb|BX005232.7| Zebrafish DNA sequence from clone CH211-172G24, complete sequence
          Length = 138158

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 32    aatactccagaaatctttttt 52
             |||||||||||||||||||||
Sbjct: 45310 aatactccagaaatctttttt 45330

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>ref|XM_983845.1| PREDICTED: Mus musculus hypothetical LOC626575 (LOC626575), mRNA
          Length = 3101

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 359 gagcggcggagccggggagg 378
           ||||||||||||||||||||
Sbjct: 708 gagcggcggagccggggagg 689

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>ref|XM_899431.2| PREDICTED: Mus musculus hypothetical LOC626575 (LOC626575), mRNA
          Length = 3101

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 359 gagcggcggagccggggagg 378
           ||||||||||||||||||||
Sbjct: 708 gagcggcggagccggggagg 689

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>ref|XM_992478.1| PREDICTED: Mus musculus hypothetical protein LOC676728 (LOC676728),
           mRNA
          Length = 3098

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 359 gagcggcggagccggggagg 378
           ||||||||||||||||||||
Sbjct: 709 gagcggcggagccggggagg 690

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>gb|AC132367.3| Mus musculus BAC clone RP23-465K21 from chromosome 17, complete
             sequence
          Length = 192971

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 228   cagctccctgagctgctgctgctc 251
             |||||||||| |||||||||||||
Sbjct: 99662 cagctccctgtgctgctgctgctc 99685

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>gb|AC098724.3| Mus musculus BAC clone RP23-3D14 from 4, complete sequence
          Length = 190437

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   gagcggcggagccggggagg 378
             ||||||||||||||||||||
Sbjct: 64857 gagcggcggagccggggagg 64838

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>gb|AC093461.4| Homo sapiens BAC clone RP11-764P14 from 7, complete sequence
          Length = 37408

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    ctccacatcatttcccatgc 107
             ||||||||||||||||||||
Sbjct: 30246 ctccacatcatttcccatgc 30265

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>emb|AL445237.16| Human DNA sequence from clone RP13-238F13 on chromosome 10 Contains the
             OAT gene for ornithine aminotransferase (gyrate atrophy),
             a homeobox protein pseudogene, the 5' end of the LHPP gene
             for phospholysine phosphohistidine inorganic pyrophosphate
             phosphatase, a RPS10 (40S ribosomal protein 10) pseudogene
             and four CpG islands, complete sequence
          Length = 182955

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 6     caccaccatcccacctcccagcaa 29
             ||||||||||||| ||||||||||
Sbjct: 37990 caccaccatcccagctcccagcaa 38013

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>emb|AL390318.20| Human DNA sequence from clone RP11-142L16 on chromosome 10 Contains the
              5' end of the PIP5K2A gene for
              phosphatidylinositol-4-phosphate 5-kinase type II alpha and
              one CpG island, complete sequence
          Length = 164955

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 220    cttcatgacagctccctgag 239
              ||||||||||||||||||||
Sbjct: 156797 cttcatgacagctccctgag 156816

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>emb|AL390957.14| Human DNA sequence from clone RP11-417A21 on chromosome 1 Contains a
             unprocessed pseudogene similar to regulator of G-protein
             signalling 18 (RGS18), complete sequence
          Length = 153856

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    atactccagaaatctttttt 52
             ||||||||||||||||||||
Sbjct: 45257 atactccagaaatctttttt 45276

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>emb|AL133344.28| Human DNA sequence from clone RP5-1158H2 on chromosome Xp11.23-11.4
             Contains part of gene FLJ22843, a KIAA0218 pseudogene, and
             a ribonucleotide reductase M2 polypeptide (RRM2)
             pseudogene, complete sequence
          Length = 168544

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 242   gctgctgctcgttatccaagagag 265
             ||||||| ||||||||||||||||
Sbjct: 62754 gctgctgatcgttatccaagagag 62731

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>emb|AL096799.6|HSJ764O22 Human DNA sequence from clone RP4-764O22 on chromosome 20 Contains the
             parts of two novel genes, complete sequence
          Length = 82812

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    aaaatactccagaaatcttt 49
             ||||||||||||||||||||
Sbjct: 54902 aaaatactccagaaatcttt 54883

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>dbj|AK030136.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4932702H24 product:unclassifiable, full
           insert sequence
          Length = 3043

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 359 gagcggcggagccggggagg 378
           ||||||||||||||||||||
Sbjct: 650 gagcggcggagccggggagg 631

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>gb|AC159463.1| Pan troglodytes BAC clone CH251-413O15 from chromosome unknown, complete
              sequence
          Length = 151114

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 242    gctgctgctcgttatccaagagag 265
              ||||||| ||||||||||||||||
Sbjct: 128393 gctgctgatcgttatccaagagag 128370

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>gb|AC063943.23| Homo sapiens 12 BAC RP11-18C24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 137242

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    ccacctcccagcaaaaaata 35
             ||||||||||||||||||||
Sbjct: 70886 ccacctcccagcaaaaaata 70867

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>emb|BX005171.9| Mouse DNA sequence from clone RP23-234H6 on chromosome X, complete
            sequence
          Length = 172077

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 228  cagctccctgagctgctgctgctc 251
            |||||||||||| |||||||||||
Sbjct: 2046 cagctccctgagatgctgctgctc 2069

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>ref|NM_208437.1| Eremothecium gossypii ABR137Wp (ABR137W), mRNA
          Length = 2868

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 133  cccagttcattccacggttc 152
            ||||||||||||||||||||
Sbjct: 1973 cccagttcattccacggttc 1954

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>emb|Z33612.1|ZMPHMU2 Z.mays (W22) phosphoglycerate mutase gene exons 2-8
          Length = 3583

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 210 acaaagtttgcttcatgaca 229
           ||||||||||||||||||||
Sbjct: 540 acaaagtttgcttcatgaca 559

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>gb|AC161010.3| Pan troglodytes BAC clone CH251-501B6 from chromosome unknown, complete
             sequence
          Length = 157204

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 242   gctgctgctcgttatccaagagag 265
             ||||||| ||||||||||||||||
Sbjct: 57514 gctgctgatcgttatccaagagag 57491

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>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II,
              complete sequence
          Length = 867699

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    cccagttcattccacggttc 152
              ||||||||||||||||||||
Sbjct: 655091 cccagttcattccacggttc 655072

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>emb|AL606915.12| Mouse DNA sequence from clone RP23-185C16 on chromosome 4, complete
              sequence
          Length = 182248

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 359    gagcggcggagccggggagg 378
              ||||||||||||||||||||
Sbjct: 180201 gagcggcggagccggggagg 180182

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>emb|AL645793.14| Mouse DNA sequence from clone RP23-480H2 on chromosome 1, complete
            sequence
          Length = 93900

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 58   aaaaagaaggggaaatattg 77
            ||||||||||||||||||||
Sbjct: 2541 aaaaagaaggggaaatattg 2522


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,098,768
Number of Sequences: 3902068
Number of extensions: 4098768
Number of successful extensions: 78545
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78407
Number of HSP's gapped (non-prelim): 138
length of query: 429
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 407
effective length of database: 17,147,199,772
effective search space: 6978910307204
effective search space used: 6978910307204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result