ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl01f12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 157 bits (79), Expect = 4e-35 Identities = 148/171 (86%) Strand = Plus / Minus Query: 314 acagataactccaggggacttcactgagatggcttgggagggggttgccggtgcagttga 373 ||||||||||||||| || || ||||||||||| ||||||||||||| ||| || ||||| Sbjct: 4572100 acagataactccaggagaatttactgagatggcctgggagggggttgtcggcgcggttga 4572041 Query: 374 tgcagcgagattgtctaaacaacagattgtggaatctgagcacctgatgaaagccctttt 433 |||||| ||| |||| || ||||| | |||||| | ||||||||||||||||| ||| | Sbjct: 4572040 tgcagctagaatgtcgaagcaacaagtagtggaagcagagcacctgatgaaagctcttct 4571981 Query: 434 ggagcagaaagatgggttagcacgcagaatattttcaaaagctgggataga 484 ||||||||| ||||| ||||| |||||||||||||| |||||||| ||||| Sbjct: 4571980 ggagcagaaggatggtttagcgcgcagaatattttcgaaagctggaataga 4571930
>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1297_C09 Length = 163378 Score = 157 bits (79), Expect = 4e-35 Identities = 148/171 (86%) Strand = Plus / Minus Query: 314 acagataactccaggggacttcactgagatggcttgggagggggttgccggtgcagttga 373 ||||||||||||||| || || ||||||||||| ||||||||||||| ||| || ||||| Sbjct: 107479 acagataactccaggagaatttactgagatggcctgggagggggttgtcggcgcggttga 107420 Query: 374 tgcagcgagattgtctaaacaacagattgtggaatctgagcacctgatgaaagccctttt 433 |||||| ||| |||| || ||||| | |||||| | ||||||||||||||||| ||| | Sbjct: 107419 tgcagctagaatgtcgaagcaacaagtagtggaagcagagcacctgatgaaagctcttct 107360 Query: 434 ggagcagaaagatgggttagcacgcagaatattttcaaaagctgggataga 484 ||||||||| ||||| ||||| |||||||||||||| |||||||| ||||| Sbjct: 107359 ggagcagaaggatggtttagcgcgcagaatattttcgaaagctggaataga 107309
>gb|AF203700.1|AF203700 Phaseolus lunatus ClpB (clpB) mRNA, complete cds; nuclear gene for chloroplast product Length = 3214 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 389 taaacaacagattgtggaatctgagcacctgatgaaagcccttttggagcagaaagatgg 448 |||||| || |||||||| ||||||||| | |||||||||||||||||||| || ||||| Sbjct: 373 taaacagcaaattgtggagtctgagcacttaatgaaagcccttttggagcaaaaggatgg 432 Query: 449 gttagcacg 457 || ||||| Sbjct: 433 cttggcacg 441
>ref|NM_128071.2| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding AT2G25140 mRNA, complete cds Length = 3223 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 390 aaacaacagattgtggaatctgagcacctgatgaaagcccttttggagcagaaagatgg 448 ||||||||||||||||||||||| || |||||||||| ||| | ||||| |||||||| Sbjct: 473 aaacaacagattgtggaatctgaacatttgatgaaagctcttcttgagcaaaaagatgg 531
>gb|AY070722.1| Arabidopsis thaliana At2g25140/F13D4.100 mRNA, complete cds Length = 3223 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 390 aaacaacagattgtggaatctgagcacctgatgaaagcccttttggagcagaaagatgg 448 ||||||||||||||||||||||| || |||||||||| ||| | ||||| |||||||| Sbjct: 473 aaacaacagattgtggaatctgaacatttgatgaaagctcttcttgagcaaaaagatgg 531
>gb|BT002223.1| Arabidopsis thaliana At2g25140/F13D4.100 mRNA, complete cds Length = 2895 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 390 aaacaacagattgtggaatctgagcacctgatgaaagcccttttggagcagaaagatgg 448 ||||||||||||||||||||||| || |||||||||| ||| | ||||| |||||||| Sbjct: 319 aaacaacagattgtggaatctgaacatttgatgaaagctcttcttgagcaaaaagatgg 377
>ref|NM_121549.2| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding AT5G15450 mRNA, complete cds Length = 2999 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 393 caacagattgtggaatctgagcacctgatgaaagcccttttggagcagaa 442 |||||||||||||| | ||||| || |||||||| |||||||||||||| Sbjct: 396 caacagattgtggagacagagcatctaatgaaagctcttttggagcagaa 445
>emb|AL391143.1|ATT20K14 Arabidopsis thaliana DNA chromosome 5, BAC clone T20K14 (ESSA project) Length = 90176 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 393 caacagattgtggaatctgagcacctgatgaaagcccttttggagcagaa 442 |||||||||||||| | ||||| || |||||||| |||||||||||||| Sbjct: 23625 caacagattgtggagacagagcatctaatgaaagctcttttggagcagaa 23576
>gb|U88076.1|TSU88076 Taenia solium 18S ribosomal RNA gene, partial sequence Length = 974 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 291 agcgcctcgtcctcgtcctcgtc 313 ||||||||||||||||||||||| Sbjct: 545 agcgcctcgtcctcgtcctcgtc 567
>ref|XM_802337.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506415.30) partial mRNA Length = 921 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 293 cgcctcgtcctcgtcctcgtca 314 |||||||||||||||||||||| Sbjct: 807 cgcctcgtcctcgtcctcgtca 786
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 218 ccccgcggggggcggcggtggc 239 |||||||||||||||||||||| Sbjct: 1195682 ccccgcggggggcggcggtggc 1195703
>ref|XM_591639.2| PREDICTED: Bos taurus similar to phosphofurin acidic cluster sorting protein 1 (LOC513882), partial mRNA Length = 1599 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 cgcctcgtcctcgtcctcgtc 313 ||||||||||||||||||||| Sbjct: 189 cgcctcgtcctcgtcctcgtc 209
>ref|XM_363332.1| Magnaporthe grisea 70-15 hypothetical protein (MG01258.4) partial mRNA Length = 1461 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 cctcgtcctcgtcctcgtcac 315 ||||||||||||||||||||| Sbjct: 1444 cctcgtcctcgtcctcgtcac 1424
>ref|XM_654336.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1824.2), mRNA Length = 1761 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 293 cgcctcgtcctcgtcctcgtc 313 ||||||||||||||||||||| Sbjct: 819 cgcctcgtcctcgtcctcgtc 799
>ref|XM_542735.2| PREDICTED: Canis familiaris similar to kelch repeat and BTB (POZ) domain containing 5 (LOC485616), mRNA Length = 1523 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 293 cgcctcgtcctcgtcctcgtc 313 ||||||||||||||||||||| Sbjct: 950 cgcctcgtcctcgtcctcgtc 930
>emb|AJ223777.1|MMAJ3777 Mus musculus mRNA for striatin Length = 2603 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 cctcgtcctcgtcctcgtcac 315 ||||||||||||||||||||| Sbjct: 754 cctcgtcctcgtcctcgtcac 734
>gb|AC151284.3| Mus musculus BAC clone RP23-391C14 from chromosome 17, complete sequence Length = 202363 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 cctcgtcctcgtcctcgtcac 315 ||||||||||||||||||||| Sbjct: 88434 cctcgtcctcgtcctcgtcac 88414
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29 Length = 310550 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 293 cgcctcgtcctcgtcctcgtc 313 ||||||||||||||||||||| Sbjct: 236718 cgcctcgtcctcgtcctcgtc 236698
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29 Length = 314100 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 cctcgtcctcgtcctcgtcac 315 ||||||||||||||||||||| Sbjct: 284475 cctcgtcctcgtcctcgtcac 284495
>gb|AF425993.1| Streptomyces coelicolor A3(2) putative secreted protein (ecrD) gene, partial cds Length = 720 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 cgcctcgtcctcgtcctcgtc 313 ||||||||||||||||||||| Sbjct: 241 cgcctcgtcctcgtcctcgtc 261
>dbj|AK136032.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420449F11 product:striatin, calmodulin binding protein, full insert sequence Length = 2959 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 cctcgtcctcgtcctcgtcac 315 ||||||||||||||||||||| Sbjct: 476 cctcgtcctcgtcctcgtcac 456
>dbj|AK051549.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130055P19 product:STRIATIN homolog [Mus musculus], full insert sequence Length = 1081 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 cctcgtcctcgtcctcgtcac 315 ||||||||||||||||||||| Sbjct: 829 cctcgtcctcgtcctcgtcac 809
>ref|XM_565081.1| Anopheles gambiae str. PEST ENSANGP00000028239 (ENSANGG00000024271), partial mRNA Length = 2808 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 294 gcctcgtcctcgtcctcgtca 314 ||||||||||||||||||||| Sbjct: 1808 gcctcgtcctcgtcctcgtca 1788
>gb|BC090968.1| Mus musculus striatin, calmodulin binding protein, mRNA (cDNA clone MGC:106672 IMAGE:30646517), complete cds Length = 3965 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 cctcgtcctcgtcctcgtcac 315 ||||||||||||||||||||| Sbjct: 827 cctcgtcctcgtcctcgtcac 807
>emb|CR956402.15| M.truncatula DNA sequence from clone MTH2-50J5 on chromosome 3, complete sequence Length = 142361 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 cctcgtcctcgtcctcgtcac 315 ||||||||||||||||||||| Sbjct: 67960 cctcgtcctcgtcctcgtcac 67940
>ref|NM_011500.2| Mus musculus striatin, calmodulin binding protein (Strn), mRNA Length = 3965 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 cctcgtcctcgtcctcgtcac 315 ||||||||||||||||||||| Sbjct: 827 cctcgtcctcgtcctcgtcac 807
>gb|AC153812.1| Homo sapiens chromosome 9 clone fa1022, complete sequence Length = 38508 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 ctcctcccatggccaggctc 218 |||||||||||||||||||| Sbjct: 31863 ctcctcccatggccaggctc 31882
>ref|XM_521845.1| PREDICTED: Pan troglodytes similar to RIKEN cDNA 4632411J06 (LOC466446), mRNA Length = 1785 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 cagcgcctcgtcctcgtcctcgtc 313 |||||||||||| ||||||||||| Sbjct: 591 cagcgcctcgtcgtcgtcctcgtc 568
>ref|XM_463241.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2089 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cctcgtcctcgtcctcgtca 314 |||||||||||||||||||| Sbjct: 506 cctcgtcctcgtcctcgtca 487
>gb|AC091246.8| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0002I03 map E1419S, complete sequence Length = 150945 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 cctcgtcctcgtcctcgtca 314 |||||||||||||||||||| Sbjct: 79346 cctcgtcctcgtcctcgtca 79365
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 cttctccaccgccaccaagg 177 |||||||||||||||||||| Sbjct: 3216686 cttctccaccgccaccaagg 3216667
>ref|XM_459566.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E06402g) partial mRNA Length = 3555 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cctcgtcctcgtcctcgtca 314 |||||||||||||||||||| Sbjct: 3001 cctcgtcctcgtcctcgtca 2982
>gb|DQ157224.1| Taenia solium 18S ribosomal RNA gene, complete sequence Length = 2434 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 agcgcctcgtcctcgtcctc 310 |||||||||||||||||||| Sbjct: 1859 agcgcctcgtcctcgtcctc 1878
>gb|AC140232.2| Mus musculus BAC clone RP24-498F17 from chromosome 5, complete sequence Length = 183612 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cctcgtcctcgtcctcgtca 314 |||||||||||||||||||| Sbjct: 113726 cctcgtcctcgtcctcgtca 113707
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 cctcgtcctcgtcctcgtca 314 |||||||||||||||||||| Sbjct: 23631263 cctcgtcctcgtcctcgtca 23631282
>ref|XM_543989.2| PREDICTED: Canis familiaris similar to pleckstrin and Sec7 domain containing (LOC486859), mRNA Length = 3889 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gcctcgtcctcgtcctcgtc 313 |||||||||||||||||||| Sbjct: 1298 gcctcgtcctcgtcctcgtc 1279
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 272 cacgccgccggctcggtacagcgcctcg 299 |||||||||||| |||| |||||||||| Sbjct: 2478947 cacgccgccggcgcggttcagcgcctcg 2478974
>ref|XM_753770.1| Ustilago maydis 521 hypothetical protein (UM02716.1) partial mRNA Length = 2334 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cctcgtcctcgtcctcgtca 314 |||||||||||||||||||| Sbjct: 2275 cctcgtcctcgtcctcgtca 2256
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 ctccaccgccaccaaggtca 180 |||||||||||||||||||| Sbjct: 72456 ctccaccgccaccaaggtca 72475
>ref|XM_743939.1| Aspergillus fumigatus Af293 hypothetical protein (Afu7g04780) partial mRNA Length = 1539 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cctcgtcctcgtcctcgtca 314 |||||||||||||||||||| Sbjct: 352 cctcgtcctcgtcctcgtca 333
>ref|XM_380400.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00224.1) partial mRNA Length = 2121 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cctcgtcctcgtcctcgtca 314 |||||||||||||||||||| Sbjct: 751 cctcgtcctcgtcctcgtca 732
>gb|AC131744.3| Mus musculus BAC clone RP23-50E10 from chromosome 3, complete sequence Length = 225416 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cctcgtcctcgtcctcgtca 314 |||||||||||||||||||| Sbjct: 16508 cctcgtcctcgtcctcgtca 16489
>ref|XM_809957.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506957.23) partial mRNA Length = 8777 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gcctcgtcctcgtcctcgtc 313 |||||||||||||||||||| Sbjct: 7484 gcctcgtcctcgtcctcgtc 7465
>emb|CR722816.2|CNS0GKO6 Tetraodon nigroviridis full-length cDNA Length = 804 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 cagcgcctcgtcctcgtcctcgtc 313 |||| ||||||||||||||||||| Sbjct: 384 cagctcctcgtcctcgtcctcgtc 361
>gb|AC084859.7| Homo sapiens chromosome 11, clone CTC-497E21, complete sequence Length = 172345 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 cagcgcctcgtcctcgtcctcgtc 313 |||||||||||| ||||||||||| Sbjct: 90211 cagcgcctcgtcgtcgtcctcgtc 90188
>emb|CR392000.2| Human DNA sequence from clone WI2-1959D15 on chromosome 9, complete sequence Length = 32108 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 ctcctcccatggccaggctc 218 |||||||||||||||||||| Sbjct: 18908 ctcctcccatggccaggctc 18927
>emb|AL589723.7| Human DNA sequence from clone RP11-204B7 on chromosome 6 Contains the TPMT gene for thiopurine S-methyltransferase, the gene for a novel protein similar to (TAT-interactive protein, 72-KD; tripartite motif protein TRIM32; zinc-finger protein HT2A), complete sequence Length = 147927 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 ccaaggtcagcaggccctcg 191 |||||||||||||||||||| Sbjct: 96769 ccaaggtcagcaggccctcg 96750
>ref|XM_500994.1| Yarrowia lipolytica CLIB122, YALI0B16896g predicted mRNA Length = 2262 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gcctcgtcctcgtcctcgtc 313 |||||||||||||||||||| Sbjct: 437 gcctcgtcctcgtcctcgtc 418
>emb|AL359649.8| Human DNA sequence from clone RP11-65D24 on chromosome 13 Contains 2 novel genes, complete sequence Length = 144792 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 ggcggtggcctcctggtgcc 250 |||||||||||||||||||| Sbjct: 89863 ggcggtggcctcctggtgcc 89882
>emb|BX048820.1|CNS099U0 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC24BA12 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 633 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 cctcgtcctcgtcctcgtca 314 |||||||||||||||||||| Sbjct: 360 cctcgtcctcgtcctcgtca 379
>emb|BX044863.1|CNS096S3 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC18DA05 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1049 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cctcgtcctcgtcctcgtca 314 |||||||||||||||||||| Sbjct: 1017 cctcgtcctcgtcctcgtca 998
>emb|BX031917.1|CNS08WSH Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA47CC02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 570 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 cctcgtcctcgtcctcgtca 314 |||||||||||||||||||| Sbjct: 24 cctcgtcctcgtcctcgtca 43
>emb|BX005972.1|CNS08CRS Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA10AG08 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 418 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 cctcgtcctcgtcctcgtca 314 |||||||||||||||||||| Sbjct: 302 cctcgtcctcgtcctcgtca 321
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 cctcgtggttcgctcctccc 206 |||||||||||||||||||| Sbjct: 4747824 cctcgtggttcgctcctccc 4747843
>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii Length = 2037969 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cctcgtcctcgtcctcgtca 314 |||||||||||||||||||| Sbjct: 469796 cctcgtcctcgtcctcgtca 469777
>gb|AC161755.3| Mus musculus BAC clone RP24-363L9 from chromosome 16, complete sequence Length = 195244 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tttggagcagaaagatgggt 450 |||||||||||||||||||| Sbjct: 137040 tttggagcagaaagatgggt 137059
>emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome; segment 10/13 Length = 348676 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 cttctccaccgccaccaagg 177 |||||||||||||||||||| Sbjct: 103495 cttctccaccgccaccaagg 103476
>emb|BX248344.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 11/14 Length = 318050 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 cttctccaccgccaccaagg 177 |||||||||||||||||||| Sbjct: 54048 cttctccaccgccaccaagg 54029
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29 Length = 296500 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 ctcgtcctcgtcctcgtcac 315 |||||||||||||||||||| Sbjct: 27570 ctcgtcctcgtcctcgtcac 27551
>gb|AE011632.1| Xanthomonas axonopodis pv. citri str. 306, section 10 of 469 of the complete genome Length = 12529 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 ctccaccgccaccaaggtca 180 |||||||||||||||||||| Sbjct: 183 ctccaccgccaccaaggtca 202
>ref|XM_940771.1| PREDICTED: Homo sapiens similar to peptidylglycine alpha-amidating monooxygenase COOH-terminal interactor (LOC651593), mRNA Length = 1668 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 cagcgcctcgtcctcgtcctcgtc 313 |||||||||||| ||||||||||| Sbjct: 381 cagcgcctcgtcgtcgtcctcgtc 358
>ref|XM_928030.1| PREDICTED: Homo sapiens similar to peptidylglycine alpha-amidating monooxygenase COOH-terminal interactor (LOC644943), mRNA Length = 1668 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 cagcgcctcgtcctcgtcctcgtc 313 |||||||||||| ||||||||||| Sbjct: 381 cagcgcctcgtcgtcgtcctcgtc 358
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 cagcgcctcgtcctcgtcct 309 |||||||||||||||||||| Sbjct: 1107487 cagcgcctcgtcctcgtcct 1107506
>gb|BC097877.1| Xenopus laevis cDNA clone MGC:115652 IMAGE:6322783, complete cds Length = 1627 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 aaacaacagattgtggaatc 409 |||||||||||||||||||| Sbjct: 186 aaacaacagattgtggaatc 205
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 cctcgtcctcgtcctcgtca 314 |||||||||||||||||||| Sbjct: 23624291 cctcgtcctcgtcctcgtca 23624310
>gb|AC140186.3| Mus musculus BAC clone RP24-363G9 from chromosome 16, complete sequence Length = 139767 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 tttggagcagaaagatgggt 450 |||||||||||||||||||| Sbjct: 138474 tttggagcagaaagatgggt 138455
>gb|AC096546.1| Homo sapiens BAC clone CTD-2005P16 from 2, complete sequence Length = 103922 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 gaatctgagcacctgatgaa 424 |||||||||||||||||||| Sbjct: 58070 gaatctgagcacctgatgaa 58051
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 cctcgtggttcgctcctccc 206 |||||||||||||||||||| Sbjct: 4816194 cctcgtggttcgctcctccc 4816213
>dbj|AK107607.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-131-B12, full insert sequence Length = 1614 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 cctcgtcctcgtcctcgtca 314 |||||||||||||||||||| Sbjct: 578 cctcgtcctcgtcctcgtca 597
>dbj|AK101109.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025E11, full insert sequence Length = 2144 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cctcgtcctcgtcctcgtca 314 |||||||||||||||||||| Sbjct: 489 cctcgtcctcgtcctcgtca 470
>gb|AY112200.1| Zea mays CL7516_1 mRNA sequence Length = 710 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gcctcgtcctcgtcctcgtc 313 |||||||||||||||||||| Sbjct: 421 gcctcgtcctcgtcctcgtc 402
>gb|AC102480.8| Mus musculus chromosome 3, clone RP24-423L4, complete sequence Length = 189940 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 cctcgtcctcgtcctcgtca 314 |||||||||||||||||||| Sbjct: 20725 cctcgtcctcgtcctcgtca 20744
>gb|U30516.1|HSTPMT07 Human thiopurine methyltransferase (TPMT) gene, exon 8 Length = 577 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 ccaaggtcagcaggccctcg 191 |||||||||||||||||||| Sbjct: 21 ccaaggtcagcaggccctcg 40
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 gcctcgtcctcgtcctcgtc 313 |||||||||||||||||||| Sbjct: 2223502 gcctcgtcctcgtcctcgtc 2223521
>dbj|AP004949.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45F11, TM0122, complete sequence Length = 90864 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 tggtacagctaaaccctaaaccct 26 ||||||| |||||||||||||||| Sbjct: 52948 tggtacacctaaaccctaaaccct 52925
>dbj|AB045146.1| Homo sapiens TPMT gene for thiopurine S-methyltransferase, complete cds Length = 27870 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 ccaaggtcagcaggccctcg 191 |||||||||||||||||||| Sbjct: 21739 ccaaggtcagcaggccctcg 21758
>dbj|D50624.1|STMVBRA1 Streptomyces virginiae VbrA gene for NusG like protein, SecE like protein and ribosomal protein, aspartate aminotransferase and adenosine deaminase, complete cds Length = 7409 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gcctcgtcctcgtcctcgtc 313 |||||||||||||||||||| Sbjct: 3489 gcctcgtcctcgtcctcgtc 3470
>dbj|D10468.1|STMVBRA Streptomyces virginiae genes for virginiae butanolide receptor and 50S ribosomal protein L11, complete cds Length = 2234 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gcctcgtcctcgtcctcgtc 313 |||||||||||||||||||| Sbjct: 783 gcctcgtcctcgtcctcgtc 764
>dbj|AB006976.1| Rhodospirillum rubrum gene for aldehyde dehydrogenase, complete cds Length = 1521 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 cagcgcctcgtcctcgtcct 309 |||||||||||||||||||| Sbjct: 1260 cagcgcctcgtcctcgtcct 1241 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,444,730 Number of Sequences: 3902068 Number of extensions: 3444730 Number of successful extensions: 86169 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85481 Number of HSP's gapped (non-prelim): 687 length of query: 486 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 464 effective length of database: 17,147,199,772 effective search space: 7956300694208 effective search space used: 7956300694208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
