Clone Information

BLAST Search Result

Clone Name	bastl01f08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	LBXCO_MOUSE (Q8BX46) Ladybird homeobox corepressor 1 (Transcript...	34	0.19
2	LBXCO_RAT (P84551) Ladybird homeobox corepressor 1	33	0.43
3	CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor	32	0.95
4	CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor	32	0.95
5	CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor	31	1.2
6	CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor	31	1.2
7	CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Conta...	31	1.2
8	CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor	31	1.2
9	CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contain...	31	1.2
10	CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor	31	1.6
11	CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor	31	1.6
12	LBXCO_HUMAN (P84550) Ladybird homeobox corepressor 1	31	1.6
13	CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragme...	30	2.1
14	CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor	30	2.1
15	CO2A1_CHICK (P02460) Collagen alpha-1(II) chain precursor (Fragm...	30	2.1
16	CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor	30	2.1
17	CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor	30	2.1
18	CCD96_HUMAN (Q2M329) Coiled-coil domain-containing protein 96	30	2.8
19	CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)	30	2.8
20	PRB2_HUMAN (P02812) Basic salivary proline-rich protein 2 (Saliv...	30	2.8
21	COL8_CAEEL (P18833) Cuticle collagen 8 precursor	30	2.8
22	VG18_BPMD2 (O64211) Gene 18 protein (Gp18)	30	2.8
23	CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor	30	3.6
24	CMTA4_ARATH (Q9FYG2) Calmodulin-binding transcription activator ...	30	3.6
25	HXA2_CHICK (Q08727) Homeobox protein Hox-A2	30	3.6
26	CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Conta...	30	3.6
27	XRCC1_HUMAN (P18887) DNA-repair protein XRCC1 (X-ray repair cros...	30	3.6
28	NFIB_CHICK (P17924) Nuclear factor 1 B-type (Nuclear factor 1/B)...	29	4.7
29	GRIP2_HUMAN (Q9C0E4) Glutamate receptor-interacting protein 2 (G...	29	4.7
30	PRP1_HUMAN (P04280) Basic salivary proline-rich protein 1 precur...	29	4.7
31	CO6A1_HUMAN (P12109) Collagen alpha-1(VI) chain precursor	25	5.8
32	CO9A1_MOUSE (Q05722) Collagen alpha-1(IX) chain precursor	29	6.2
33	CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain	29	6.2
34	IF2G_DROME (Q24208) Eukaryotic translation initiation factor 2 g...	29	6.2
35	COL19_CAEEL (P18835) Cuticle collagen 19 precursor	29	6.2
36	SKI2_YEAST (P35207) Antiviral helicase SKI2 (EC 3.6.1.-)	29	6.2
37	DMI1_ORYSA (Q5N941) Putative ion channel DMI1, chloroplast precu...	29	6.2
38	CMTA3_ARATH (Q8GSA7) Calmodulin-binding transcription activator ...	29	6.2
39	YJ16_PYRHO (O58760) Hypothetical ABC transporter permease protei...	29	6.2
40	CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Frag...	29	6.2
41	SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1	25	7.5
42	CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor	28	8.1
43	ZBTB9_HUMAN (Q96C00) Zinc finger and BTB domain-containing prote...	28	8.1
44	CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor	28	8.1
45	CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor	28	8.1
46	STP_SHV24 (P25050) Saimiri transformation-associated protein (st...	28	8.1
47	GAL1_BACSU (P39574) Galactokinase (EC 2.7.1.6) (Galactose kinase)	28	8.1
48	FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger prote...	28	8.1
49	CO6A2_CHICK (P15988) Collagen alpha-2(VI) chain precursor	28	8.1
50	RON_HUMAN (Q04912) Macrophage-stimulating protein receptor precu...	28	8.1
51	SYNJ1_HUMAN (O43426) Synaptojanin-1 (EC 3.1.3.36) (Synaptic inos...	28	8.1
52	SNTB2_MOUSE (Q61235) Beta-2-syntrophin (59 kDa dystrophin-associ...	28	8.1

>LBXCO_MOUSE (Q8BX46) Ladybird homeobox corepressor 1 (Transcriptional|
           corepressor Corl1)
          Length = 964

 Score = 33.9 bits (76), Expect = 0.19
 Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -2

Query: 317 ASTNSGEGTKNPRGGEGGEGTEY---PQAPPRTRTR*GES*MAG--SPPPTHP 174
           A++ SG   K   GG GG G      P  PP    R GE   AG   PPP HP
Sbjct: 290 ANSGSGGAGKGGAGGGGGPGCGSEMAPGPPPHKSLRCGEDEAAGPPGPPPPHP 342

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>LBXCO_RAT (P84551) Ladybird homeobox corepressor 1|
          Length = 964

 Score = 32.7 bits (73), Expect = 0.43
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -2

Query: 317 ASTNSGEGTKNPRGGEGGEGTEY---PQAPPRTRTR*GES*MAG--SPPPTHP 174
           A++ SG   K   GG GG G      P  PP    R GE   +G   PPP HP
Sbjct: 290 ANSGSGGAGKGGAGGGGGPGCGSEMAPGPPPHKSLRCGEDEASGPPGPPPPHP 342

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>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 320 PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAG 195
           P   N  +G   P+G +GG+G + P  PP  +   G S  AG
Sbjct: 530 PDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGTAG 571

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>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 19/49 (38%), Positives = 21/49 (42%)
 Frame = -2

Query: 320 PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSPPPTHP 174
           P   +   G    RGG GG G   PQ PP      GE+   G P PT P
Sbjct: 583 PKGNDGAPGKNGERGGPGGPG---PQGPPGKN---GETGPQGPPGPTGP 625

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>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = -2

Query: 320  PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSPPPTHP 174
            PA      G+    G +G  G   P  PP  R R G+S  AG P P  P
Sbjct: 1126 PAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDSGPAGPPGPPGP 1174

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>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = -2

Query: 320  PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSPPPTHP 174
            PA      G+    G +G  G   P  PP  R R G+S  AG P P  P
Sbjct: 1126 PAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDSGPAGPPGPPGP 1174

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>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1418

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
 Frame = -2

Query: 320  PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP----PPTHP 174
            P+      G   P G +G  G   P  PP  R R GE+  AG P    PP  P
Sbjct: 1090 PSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP 1142

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>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 320 PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAG 195
           P   N  +G   P+G +GG+G + P  PP  +   G S  AG
Sbjct: 524 PDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGPAG 565

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>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1419

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
 Frame = -2

Query: 320  PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP----PPTHP 174
            P+      G   P G +G  G   P  PP  R R GE+  AG P    PP  P
Sbjct: 1091 PSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPP 1143

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>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor|
          Length = 1496

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 302 GEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSPPP 183
           G G   P+G  G  GT     PP  +   GE  +AG+P P
Sbjct: 733 GHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGP 772

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>CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor|
          Length = 1356

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 19/45 (42%), Positives = 22/45 (48%)
 Frame = -2

Query: 317 ASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSPPP 183
           AS  SG G K PRG +G  G   PQ P     + G   +AG P P
Sbjct: 20  ASCQSG-GLKGPRGAKGPRGDRGPQGPNGRDGKAGLPGIAGPPGP 63

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>LBXCO_HUMAN (P84550) Ladybird homeobox corepressor 1|
          Length = 965

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 22/55 (40%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
 Frame = -2

Query: 317 ASTNSGEGTKNPRGGEGGEGTEY-----PQAPPRTRTR*GES*MAG--SPPPTHP 174
           A+  SG   K   GG GG G        P  PP    R GE   AG   PPP HP
Sbjct: 290 ANGGSGGQGKGGAGGGGGGGPGCGAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHP 344

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>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)|
          Length = 1362

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -2

Query: 311 TNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSPPPTHP 174
           + +  G K PRG +G +G   P  PP    R GE    G P P  P
Sbjct: 26  SEASAGRKGPRGDKGPQGERGPPGPPG---RDGEDGPPGPPGPPGP 68

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>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = -2

Query: 308 NSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSPPPTHP 174
           N   G   PRG  G  G   P  P   R   G    AG P PT P
Sbjct: 284 NGAPGQMGPRGLPGERGRPGPSGPAGARGNDGAPGAAGPPGPTGP 328



 Score = 28.9 bits (63), Expect = 6.2
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = -2

Query: 320  PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSPPPTHP 174
            PA      G+    G +G  G   P  PP  R R GE    G P P  P
Sbjct: 1126 PAGPRGPPGSAGAAGKDGLNGLPGPIGPPGPRGRTGEVGPVGPPGPPGP 1174

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>CO2A1_CHICK (P02460) Collagen alpha-1(II) chain precursor (Fragment)|
          Length = 369

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
 Frame = -2

Query: 320 PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP----PPTHP 174
           P+      G   P G +G  G   P  PP  R R GE   AG P    PP  P
Sbjct: 41  PSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGPPGNPGPPGPP 93

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>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 320 PASTNSGEGTKNPRGGEGGEGTEYPQAPP 234
           P   N  +G   P+G +GG+G + P  PP
Sbjct: 530 PDGNNGAQGPPGPQGVQGGKGEQGPAGPP 558

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>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 320 PASTNSGEGTKNPRGGEGGEGTEYPQAPP 234
           P   N  +G   P+G +GG+G + P  PP
Sbjct: 524 PDGNNGAQGPPGPQGVQGGKGEQGPAGPP 552

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>CCD96_HUMAN (Q2M329) Coiled-coil domain-containing protein 96|
          Length = 555

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -2

Query: 305 SGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSPPPTHP 174
           S E TK+P GGEGG+G      P + +        A S PPT P
Sbjct: 4   SSEHTKDP-GGEGGDGESLAARPSKIK--------ASSGPPTSP 38

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>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)|
          Length = 779

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = -2

Query: 320 PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSPPPTHP 174
           PA      G+    G +G  G   P  PP  R R G++  AG P P  P
Sbjct: 699 PAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGP 747

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>PRB2_HUMAN (P02812) Basic salivary proline-rich protein 2 (Salivary|
           proline-rich protein) (Con1 glycoprotein) [Contains:
           Basic peptide P-F] (Fragment)
          Length = 382

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 22/71 (30%), Positives = 27/71 (38%)
 Frame = -2

Query: 284 PRGGEGGEGTEYPQAPPRTRTR*GES*MAGSPPPTHPWVVPLLEYYTVRSGTSKQAITRS 105
           P+GG   +G   P   P+     G +   G PPP  P   P         G SK    RS
Sbjct: 275 PQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP-------PQGGSKSRSARS 327

Query: 104 SPEMPVGRAEQ 72
            P  P G  +Q
Sbjct: 328 PPGKPQGPPQQ 338



 Score = 29.6 bits (65), Expect = 3.6
 Identities = 22/71 (30%), Positives = 27/71 (38%)
 Frame = -2

Query: 284 PRGGEGGEGTEYPQAPPRTRTR*GES*MAGSPPPTHPWVVPLLEYYTVRSGTSKQAITRS 105
           P+GG   +G   P   P+     G +   G PPP  P   P         G SK   +RS
Sbjct: 213 PQGGNQPQGPPPPPGKPQGPPPQGGNKSQGPPPPGKPQGPP-------PQGGSKSRSSRS 265

Query: 104 SPEMPVGRAEQ 72
            P  P G   Q
Sbjct: 266 PPGKPQGPPPQ 276



 Score = 28.5 bits (62), Expect = 8.1
 Identities = 21/71 (29%), Positives = 27/71 (38%)
 Frame = -2

Query: 284 PRGGEGGEGTEYPQAPPRTRTR*GES*MAGSPPPTHPWVVPLLEYYTVRSGTSKQAITRS 105
           P+GG   +G   P   P+     G +   G PPP  P   P         G +K   +RS
Sbjct: 89  PQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP-------PQGDNKSRSSRS 141

Query: 104 SPEMPVGRAEQ 72
            P  P G   Q
Sbjct: 142 PPGKPQGPPPQ 152

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>COL8_CAEEL (P18833) Cuticle collagen 8 precursor|
          Length = 282

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 15/64 (23%)
 Frame = -2

Query: 320 PASTNSGEGTKNPRGGEGGEGTE---------------YPQAPPRTRTR*GES*MAGSPP 186
           PA      G   P GG+GG G +                P+  P T  R G++  AG P 
Sbjct: 157 PAGDQGRHGPPGPTGGQGGPGEQGDAGRPGAAGCPGPPGPRGEPGTEYRPGQAGRAGPPG 216

Query: 185 PTHP 174
           P  P
Sbjct: 217 PRGP 220

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>VG18_BPMD2 (O64211) Gene 18 protein (Gp18)|
          Length = 51

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 180 GGWRRPGHSRLTSPRPRPR 236
           GGW+RP   R T P+P P+
Sbjct: 26  GGWKRPRKPRTTKPKPAPK 44

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>CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -2

Query: 308 NSGE-GTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP 189
           N GE G + P G  G  G E P+ PP  R   GE    G P
Sbjct: 707 NPGEPGLRGPEGSRGLPGVEGPRGPPGPRGVQGEQGATGLP 747

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>CMTA4_ARATH (Q9FYG2) Calmodulin-binding transcription activator 4|
           (Signal-responsive protein 5) (Ethylene-induced
           calmodulin-binding protein d) (EICBP.d)
           (Ethylene-induced calmodulin-binding protein 4) (EICBP4)
           (AtFIN21)
          Length = 1016

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 382 TRWLKPIEVLDILQNSELFGIHN 450
           +RWLKP EVL ILQN E   + N
Sbjct: 47  SRWLKPPEVLFILQNHESLTLTN 69

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>HXA2_CHICK (Q08727) Homeobox protein Hox-A2|
          Length = 375

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 287 NPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSPPPT-HPWV 168
           NP G     G   P+A PR R+  G    AG+PPP  +PW+
Sbjct: 60  NPGGHPRHSGGGRPKASPRARS--GSPGPAGAPPPPEYPWM 98

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>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1459

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
 Frame = -2

Query: 320  PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP----PPTHP 174
            P+      G   P G +G  G   P  PP  R R GE+   G P    PP  P
Sbjct: 1131 PSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPVGPPGSPGPPGPP 1183

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>XRCC1_HUMAN (P18887) DNA-repair protein XRCC1 (X-ray repair cross-complementing|
           protein 1)
          Length = 633

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 326 IAPASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP--PPT 180
           +A   ++S E   +  GG G E  + PQ  P+T+T+  ++    SP  PPT
Sbjct: 403 MAGPGSSSEEDEASHSGGSGDEAPKLPQKQPQTKTKPTQAAGPSSPQKPPT 453

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>NFIB_CHICK (P17924) Nuclear factor 1 B-type (Nuclear factor 1/B) (NF1-B)|
           (NFI-B) (NF-I/B) (CCAAT-box-binding transcription
           factor) (CTF) (TGGCA-binding protein)
          Length = 560

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +3

Query: 153 FKKWHHPGVGGWRRPGHSRLTSPRPRPRWRLRIFSALAPLPPA 281
           F + HHPG+ G  +   S  T P P P      F A A LPPA
Sbjct: 338 FPQHHHPGIPGVAQSVISTRTPPSPSP----LPFPAQAILPPA 376

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>GRIP2_HUMAN (Q9C0E4) Glutamate receptor-interacting protein 2 (GRIP2 protein)|
          Length = 1043

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -2

Query: 278 GGEGGEGTEYPQAPPRTRT----R*GES*MAGSPPPTHP 174
           GG GG G+  PQA  R  T    R G   + GSPPPT P
Sbjct: 794 GGFGGPGSYTPQAAARGTTPQERRPGW--LRGSPPPTEP 830

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>PRP1_HUMAN (P04280) Basic salivary proline-rich protein 1 precursor (Salivary|
           proline-rich protein) [Contains: Basic peptide IB-6;
           Peptide P-H]
          Length = 392

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 21/71 (29%), Positives = 27/71 (38%)
 Frame = -2

Query: 284 PRGGEGGEGTEYPQAPPRTRTR*GES*MAGSPPPTHPWVVPLLEYYTVRSGTSKQAITRS 105
           P+GG   +G   P   P+     G +   G PPP  P   P         G SK    R+
Sbjct: 285 PQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP-------AQGGSKSQSARA 337

Query: 104 SPEMPVGRAEQ 72
            P  P G  +Q
Sbjct: 338 PPGKPQGPPQQ 348

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>CO6A1_HUMAN (P12109) Collagen alpha-1(VI) chain precursor|
          Length = 1028

 Score = 25.0 bits (53), Expect(2) = 5.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 320 PASTNSGEGTKNPRGGEGGEGTEYPQAPP 234
           P   N+    +  +G +G  G E PQ PP
Sbjct: 555 PGDDNNDIAPRGVKGAKGYRGPEGPQGPP 583



 Score = 22.3 bits (46), Expect(2) = 5.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 199 PGRRHPPTPGWCHFLNTIL 143
           PG + PP P  C  L+ I+
Sbjct: 583 PGHQGPPGPDECEILDIIM 601

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>CO9A1_MOUSE (Q05722) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -2

Query: 308 NSGE-GTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP 189
           N GE G + P G  G  G E P+ PP  R   GE    G P
Sbjct: 707 NPGEPGLRGPEGIRGLPGVEGPRGPPGPRGMQGEQGATGLP 747

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>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain|
          Length = 1049

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = -2

Query: 320  PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP 189
            PA      G   P G +G  G   P  PP  R   GE    GSP
Sbjct: 979  PAGPRGPVGPSGPPGKDGASGHPGPIGPPGPRGNRGERGSEGSP 1022

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>IF2G_DROME (Q24208) Eukaryotic translation initiation factor 2 gamma subunit|
           (eIF-2-gamma) (Protein suppressor of variegation 3-9)
          Length = 475

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 17/42 (40%), Positives = 18/42 (42%)
 Frame = +1

Query: 172 QGWVGGGDPAIQDSPHLVLVLGGACGYSVPSPPSPPRGFLVP 297
           QG V  G P I  S  L   +   C Y V   P PPR F  P
Sbjct: 211 QGTVAEGAPIIPISAQLKYNIDVLCEYIVNKIPVPPRDFNAP 252

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>COL19_CAEEL (P18835) Cuticle collagen 19 precursor|
          Length = 289

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 24/78 (30%), Positives = 28/78 (35%)
 Frame = -2

Query: 317 ASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSPPPTHPWVVPLLEYYTVR 138
           A    G G + P G  GG G + PQ         G    AG P P  P   P  EY   +
Sbjct: 161 AGPAGGNGRRGPPGPVGGPGEQGPQGDA------GRPGAAGRPGPAGPRGEPGTEYKPGQ 214

Query: 137 SGTSKQAITRSSPEMPVG 84
            G       R  P+ P G
Sbjct: 215 PG-------RPGPQGPRG 225

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>SKI2_YEAST (P35207) Antiviral helicase SKI2 (EC 3.6.1.-)|
          Length = 1287

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 323 APASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*G 213
           AP+ T++G G    RGG GG  T   +      TR G
Sbjct: 548 APSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGG 584

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>DMI1_ORYSA (Q5N941) Putative ion channel DMI1, chloroplast precursor|
          Length = 965

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 305 SGEGTKNPRGGEGGEGTEYPQAPP 234
           S  G  +P GG GGEG+  P+ PP
Sbjct: 4   SDGGEASPSGGGGGEGSPDPRRPP 27

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>CMTA3_ARATH (Q8GSA7) Calmodulin-binding transcription activator 3|
           (Signal-responsive protein 1) (Ethylene-induced
           calmodulin-binding protein a) (EICBP.a)
           (Ethylene-induced calmodulin-binding protein 1) (EICBP1)
          Length = 1032

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 379 RTRWLKPIEVLDILQNSELFGI 444
           R RWL+P E+ +ILQN + F I
Sbjct: 23  RHRWLRPPEICEILQNYQRFQI 44

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>YJ16_PYRHO (O58760) Hypothetical ABC transporter permease protein PH1036|
          Length = 276

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +3

Query: 60  EQLPLLGA---TDWHLWTGASDCLLACPRSNSIVFKKWHHPGVGGW 188
           ++LPLL      DW L T AS  ++  P     +F+K++  G+ GW
Sbjct: 227 QRLPLLRGQYFVDWGLLTAASIMVMLVPLLVYALFQKYYISGMIGW 272

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>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)|
          Length = 1262

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
 Frame = -2

Query: 299  EGTKNPRGGEGGEGT------EYPQAPPRTRTR*GES*MAGSP-PPTHP 174
            +G K  RG  GG G         P  PP      GES   G P PP HP
Sbjct: 856  QGVKGERGSPGGPGAAGFPGARGPPGPPGNNGDRGESGPPGVPGPPGHP 904

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>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 25.0 bits (53), Expect(2) = 7.5
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 177 VGGWRRPGHSRLTSPRPRPR 236
           VG  RR  HSR  SP PR R
Sbjct: 512 VGRRRRHSHSRSPSPSPRKR 531



 Score = 21.9 bits (45), Expect(2) = 7.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 259 PSPPSPPRGFLVPS 300
           PSPP PPR    PS
Sbjct: 555 PSPPPPPRRRRSPS 568

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>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor|
          Length = 1460

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = -2

Query: 320  PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSPPPTHP 174
            PA      G+    G +G  G   P  PP  R R G++   G P P  P
Sbjct: 1133 PAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGP 1181

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>ZBTB9_HUMAN (Q96C00) Zinc finger and BTB domain-containing protein 9|
          Length = 473

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 176 GGWVAATRPFKTHLTSSSSSVAPADIQ 256
           GGW   + PF+T + SS+S+ +PA  +
Sbjct: 167 GGWCIRSSPFQTPVQSSASTESPASTE 193

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>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = -2

Query: 320  PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP 189
            PA      G   P G +G  G   P  PP  R   GE    GSP
Sbjct: 1134 PAGPRGPVGPHGPPGKDGSSGHPGPIGPPGPRGNRGERGSEGSP 1177

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>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor|
          Length = 1464

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = -2

Query: 320  PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSPPPTHP 174
            PA      G+    G +G  G   P  PP  R R G++   G P P  P
Sbjct: 1137 PAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGP 1185

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>STP_SHV24 (P25050) Saimiri transformation-associated protein (stpC)|
           (Collagen-like protein)
          Length = 105

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = -2

Query: 320 PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSPPPTHPWVVP 162
           P      +G   P+G  G +G   PQ PP  +   G     G P P  P  +P
Sbjct: 22  PPGPPGPQGPPGPQGPPGPQGPPGPQGPPGPQGPPGPQGPPGPPGPPGPSGLP 74

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>GAL1_BACSU (P39574) Galactokinase (EC 2.7.1.6) (Galactose kinase)|
          Length = 390

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 114 DCLLACPRSNSIVFKKWHHPGVGGWRRPG 200
           D  + CP  + +VF  W H GV G R  G
Sbjct: 310 DYEVTCPELDELVFAAWDHEGVIGSRMTG 338

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>FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger protein multitype 1)|
            (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 1004

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -2

Query: 323  APASTNSGE-GTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSPPPTHP 174
            APA   S + G++ PR G G E  E P  PP +     E   A  PPP  P
Sbjct: 901  APAPAASPQPGSRGPRDGLGPEPQEPPPGPPPSPAAAPE---AVPPPPAPP 948

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>CO6A2_CHICK (P15988) Collagen alpha-2(VI) chain precursor|
          Length = 1022

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 299 EGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP-PPTHP 174
           +GT+  +G +G  G   P+  P TR   GE+   G+P PP  P
Sbjct: 545 KGTQGTKGEKGEPGDPGPRGEPGTRGPPGEAGPEGTPGPPGDP 587

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>RON_HUMAN (Q04912) Macrophage-stimulating protein receptor precursor (EC|
           2.7.10.1) (MSP receptor) (p185-Ron) (CDw136 antigen)
           [Contains: Macrophage-stimulating protein receptor alpha
           chain; Macrophage-stimulating protein receptor beta
           chain]
          Length = 1400

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = +1

Query: 172 QGWVGGGDPAIQDSPHLVLVLGGACGYSVPS-----PPSPPRGFLVP 297
           QGWV G   A  D         GA G+++P      PP PP   LVP
Sbjct: 835 QGWVAGNLSARGD---------GAAGFTLPGFRFLPPPHPPSANLVP 872

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>SYNJ1_HUMAN (O43426) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1575

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 205  QDSPHLVLVLGGACGYSVPSPPSPPRGFLVPSPE 306
            Q SP   L   G  GYS   P  PPR  ++ +P+
Sbjct: 1176 QPSPQAGLAGPGPAGYSTARPTIPPRAGVISAPQ 1209

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>SNTB2_MOUSE (Q61235) Beta-2-syntrophin (59 kDa dystrophin-associated protein|
           A1, basic component 2) (Syntrophin 3) (SNT3)
           (Syntrophin-like) (SNTL)
          Length = 520

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 184 GGGDPAIQDSPHLVLVLGGACGYSVPSPPSPPRG 285
           GGG  ++  SP+         G   PSPP+PPRG
Sbjct: 57  GGGGESLPGSPNR--------GLGPPSPPAPPRG 82


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,139,793
Number of Sequences: 219361
Number of extensions: 1132813
Number of successful extensions: 5473
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 4325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5401
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result