ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl01f07 |
|---|---|
| Clone Library Name | barley_pub |
>R13L3_ARATH (Q9STE7) Putative disease resistance RPP13-like protein 3| Length = 847 Score = 34.7 bits (78), Expect = 0.14 Identities = 15/42 (35%), Positives = 25/42 (59%) Frame = +2 Query: 80 RGEEVHKEWIRMVREVAHAIEDCIDRFMHRVRMAKTGAGWLR 205 R +EV KEW ++V ++A+ IED +D + ++ G LR Sbjct: 53 REDEVSKEWTKLVLDIAYDIEDVLDTYFLKLEERSLRRGLLR 94
>RPP13_ARATH (Q9M667) Disease resistance protein RPP13 (Resistance to| Peronospora parasitica protein 13) Length = 835 Score = 34.3 bits (77), Expect = 0.19 Identities = 22/82 (26%), Positives = 39/82 (47%) Frame = +2 Query: 80 RGEEVHKEWIRMVREVAHAIEDCIDRFMHRVRMAKTGAGWLRRAVHRVKTVKARNEFAMA 259 R +EV KEW ++V + A+ +ED +D + ++ G LRR +++ Sbjct: 53 REDEVSKEWSKLVLDFAYDVEDVLDTYHLKLEERSQRRG-LRRLTNKIGRKMDAYSIVDD 111 Query: 260 IQELKKISEDASKLRGAYSYCG 325 I+ LK+ D ++ R Y G Sbjct: 112 IRILKRRILDITRKRETYGIGG 133
>R13L2_ARATH (Q9STE5) Putative disease resistance RPP13-like protein 2| Length = 847 Score = 32.0 bits (71), Expect = 0.92 Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Frame = +2 Query: 86 EEVHKEWIRMVREVAHAIEDCIDRFMHRV--RMAKTGAGWLRRAVHRVKTVKARNEFAMA 259 +EV KEW ++V ++A+ +ED +D + ++ R+ + G L R + + K Sbjct: 55 DEVSKEWTKLVLDIAYDVEDVLDTYFLKLEKRLHRLG---LMRLTNIISDKKDAYNILDD 111 Query: 260 IQELKKISEDASK 298 I+ LK+ + D ++ Sbjct: 112 IKTLKRRTLDVTR 124
>PCP_ERWCT (Q6D7H1) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)| (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase) Length = 215 Score = 30.8 bits (68), Expect = 2.1 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -3 Query: 172 HSVHEAVDAVFNGVRHLTYHPDPLLMHLFTPSMATVLL 59 H +H+ D V G H+ Y P+ H PSM T L+ Sbjct: 152 HQLHQQGDVVRGGFVHIPYSPEQAARHPGEPSMPTPLV 189
>TPP1_RAT (Q9EQV6) Tripeptidyl-peptidase 1 precursor (EC 3.4.14.9)| (Tripeptidyl-peptidase I) (TPP-I) (Tripeptidyl aminopeptidase) Length = 563 Score = 30.8 bits (68), Expect = 2.1 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -3 Query: 256 HGELVTGLHRLHPVDSPSEPPGPCLGHPHSVHEAV 152 H +LV GLHR P+ SP + P P P +H V Sbjct: 166 HVDLVAGLHRFPPLSSPRQRPEPQGVGPVGLHLGV 200
>RPOA_CAMJR (Q5HSJ6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 337 Score = 30.0 bits (66), Expect = 3.5 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = -3 Query: 208 PSEPPGPCLGHPHSVHEAVDAVFNGVRHLTYHPDPLLMHLFTPSMATVLLILDDGRIMPN 29 PSE + P + A+DA F VR TY + +L VL + DG+I PN Sbjct: 153 PSEEIKELINDPKFI--ALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPN 210
>RPOA_CAMJE (Q9PM80) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 337 Score = 30.0 bits (66), Expect = 3.5 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = -3 Query: 208 PSEPPGPCLGHPHSVHEAVDAVFNGVRHLTYHPDPLLMHLFTPSMATVLLILDDGRIMPN 29 PSE + P + A+DA F VR TY + +L VL + DG+I PN Sbjct: 153 PSEEIKELINDPKFI--ALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPN 210
>INP5E_MOUSE (Q9JII1) 72 kDa inositol polyphosphate 5-phosphatase (EC 3.1.3.36)| (Phosphatidylinositol-4,5-bisphosphate 5-phosphatase) (Phosphatidylinositol polyphosphate 5-phosphatase type IV) Length = 647 Score = 30.0 bits (66), Expect = 3.5 Identities = 17/59 (28%), Positives = 21/59 (35%) Frame = -3 Query: 331 PTATVGVCSSEXXXXXXXXXXXLDSHGELVTGLHRLHPVDSPSEPPGPCLGHPHSVHEA 155 P + + SS D + T L R H PS P P G HS+H A Sbjct: 199 PAMDLSIASSSLRTANKVDPEHTDYKLRMQTRLVRAHSNLGPSRPRSPLAGDDHSIHSA 257
>SSI2_STRLO (P35706) Trypsin inhibitor STI2 precursor| Length = 144 Score = 29.6 bits (65), Expect = 4.6 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Frame = -1 Query: 309 APLSLDASSDIFLS----SWIAMANSLRAFTVFTRWTARRSHPAPVLA 178 AP SL A S + L+ + A A+ LRA T+ TA +HPAP LA Sbjct: 33 APASLYAPSALVLTVGHGTSAAAASPLRAVTLNCAPTASGTHPAPALA 80
>SNF6_YEAST (P18888) Transcription regulatory protein SNF6 (SWI/SNF complex| component SNF6) Length = 332 Score = 29.6 bits (65), Expect = 4.6 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = -3 Query: 169 SVHEAVDAVFNGVRHLTYHPDPLLMHLFTPSM 74 S + +DAVF HL Y PD +++H P++ Sbjct: 182 STKDMIDAVFEQDSHLRYQPDGVVVHRDDPAL 213
>RPOC_CLOAB (Q97EH0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1182 Score = 29.3 bits (64), Expect = 6.0 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%) Frame = +2 Query: 38 DSAVIQDEQNSRHG------RGEEVHKEWIRMVREVAHAIEDCIDRFMHRVRMAKTGA 193 ++AV + E+ R G R E V W + +VA A+ D +DRF MA +GA Sbjct: 653 ETAVEKIEKMYRRGFISDDERYERVISTWTKTTEKVADALMDNLDRFNPIFMMADSGA 710
>NUOL_BUCAI (P57262) NADH-quinone oxidoreductase chain L (EC 1.6.99.5) (NADH| dehydrogenase I, chain L) (NDH-1, chain L) Length = 614 Score = 29.3 bits (64), Expect = 6.0 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +3 Query: 9 INFIKYEFGMILPSSRMSKTVAMEGVKRCIRSGSGWYVRWR 131 IN K +FG L +S + GV I S WY+R++ Sbjct: 70 INEFKIDFGFFLDGLSLSMLFVITGVGLLIHIFSSWYMRYK 110
>T2S1_STRAH (O31074) Type II restriction enzyme SacI (EC 3.1.21.4)| (Endonuclease SacI) (R.SacI) Length = 358 Score = 29.3 bits (64), Expect = 6.0 Identities = 18/42 (42%), Positives = 22/42 (52%) Frame = -1 Query: 291 ASSDIFLSSWIAMANSLRAFTVFTRWTARRSHPAPVLAILTR 166 AS D+FL WI +A SLR +TA A V A+L R Sbjct: 22 ASDDVFLEDWIFLATSLREVDAPRTYTA-----ALVTALLAR 58
>RABE1_RAT (O35550) Rab GTPase-binding effector protein 1 (Rabaptin-5)| (Rabaptin-5alpha) Length = 862 Score = 28.9 bits (63), Expect = 7.8 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 9/96 (9%) Frame = +2 Query: 44 AVIQDEQNSRHGRGEEVHKEWIRMVREVAHAIEDCIDRFMHR--VRMAKTGAGWLR---R 208 A+ +N++ +EV ++W V + +++ + + H+ +R+ + A W + Sbjct: 90 AIATVSENTKQEAIDEVKRQWREEVASLQAVMKETVRDYEHQFHLRLEQERAQWAQYRES 149 Query: 209 AVHRVKTVKAR----NEFAMAIQELKKISEDASKLR 304 A + ++ R E E+KK EDA KLR Sbjct: 150 ADREIADLRRRLSEGQEEENLENEMKKAQEDAEKLR 185
>RABE1_MOUSE (O35551) Rab GTPase-binding effector protein 1 (Rabaptin-5)| (Rabaptin-5alpha) Length = 862 Score = 28.9 bits (63), Expect = 7.8 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 9/96 (9%) Frame = +2 Query: 44 AVIQDEQNSRHGRGEEVHKEWIRMVREVAHAIEDCIDRFMHR--VRMAKTGAGWLR---R 208 A+ +N++ +EV ++W V + +++ + + H+ +R+ + A W + Sbjct: 90 AIATVSENTKQEAIDEVKRQWREEVASLQAIMKETVRDYEHQFHLRLEQERAQWAQYRES 149 Query: 209 AVHRVKTVKAR----NEFAMAIQELKKISEDASKLR 304 A + ++ R E E+KK EDA KLR Sbjct: 150 AEREIADLRRRLSEGQEEENLENEMKKAQEDAEKLR 185
>LSTP_STAST (P10548) Lysostaphin precursor (EC 3.4.24.75) (Glycyl-glycine| endopeptidase) Length = 480 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/44 (31%), Positives = 20/44 (45%) Frame = +3 Query: 81 GVKRCIRSGSGWYVRWRTPLKTASTASCTE*GWPRQGPGGSDGL 212 G+ I G +++ TP+K S+ E GW G G GL Sbjct: 260 GINGGIHYGVDFFMNIGTPVKAISSGKIVEAGWSNYGGGNQIGL 303
>QUEA_PROMA (Q7VDH4) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 370 Score = 28.9 bits (63), Expect = 7.8 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +2 Query: 92 VHKEWIRMVREVAHAIEDCIDR 157 +H EW+ + EV AI++C DR Sbjct: 242 LHSEWVEVKEEVVSAIKECRDR 263 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,460,096 Number of Sequences: 219361 Number of extensions: 1381504 Number of successful extensions: 4491 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4354 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4490 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
