ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl01f07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC137113.4| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
4ref|NM_001012609.1| Gallus gallus gonadotropin-releasing hormone... 44 0.43
5gb|AY895154.1| Gallus gallus gonadotropin releasing hormone rece... 44 0.43
6gb|AC126607.7| Mus musculus chromosome 6, clone RP24-113M16, com... 42 1.7
7gb|AC140441.3| Mus musculus BAC clone RP23-82A21 from chromosome... 42 1.7
8gb|AE005677.1| Caulobacter crescentus CB15 section 3 of 359 of t... 42 1.7
9gb|AC135644.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
10dbj|AK066559.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
11gb|BC106516.1| Xenopus laevis cDNA clone IMAGE:7394056 40 6.7
12gb|BC082222.1| Xenopus laevis cDNA clone IMAGE:7204317 40 6.7
13gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.7
14ref|XM_502193.1| Yarrowia lipolytica CLIB122, YALI0C23727g predi... 40 6.7
15emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete g... 40 6.7
16dbj|AK094011.1| Homo sapiens cDNA FLJ36692 fis, clone UTERU20088... 40 6.7
17gb|AC104305.2| Homo sapiens chromosome 3 clone RP11-523D22, comp... 40 6.7
18gb|AC137935.2| Homo sapiens chromosome 3 clone RP11-626A1, compl... 40 6.7
19emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 6.7 
>gb|AC137113.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0006N14, complete sequence
          Length = 155730

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 143   gactgcatcgaccgcttcatgcaccg 168
             ||||||||||||||||||||||||||
Sbjct: 68923 gactgcatcgaccgcttcatgcaccg 68898
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 143      gactgcatcgaccgcttcatgcaccg 168
                ||||||||||||||||||||||||||
Sbjct: 15213290 gactgcatcgaccgcttcatgcaccg 15213265



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 128      gcgcacgccattgaagactgcatcgaccgcttcatgcaccg 168
                ||||||| ||| || |||||| ||||||||||| |||||||
Sbjct: 26917473 gcgcacgacatcgaggactgcgtcgaccgcttcttgcaccg 26917513



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 7        acatcaatttcatcaagtat 26
                ||||||||||||||||||||
Sbjct: 23076068 acatcaatttcatcaagtat 23076087
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 143      gactgcatcgaccgcttcatgcaccg 168
                ||||||||||||||||||||||||||
Sbjct: 15294789 gactgcatcgaccgcttcatgcaccg 15294764



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 128      gcgcacgccattgaagactgcatcgaccgcttcatgcaccg 168
                ||||||| ||| || |||||| ||||||||||| |||||||
Sbjct: 27244526 gcgcacgacatcgaggactgcgtcgaccgcttcttgcaccg 27244566



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 7        acatcaatttcatcaagtat 26
                ||||||||||||||||||||
Sbjct: 23385978 acatcaatttcatcaagtat 23385997
to top
>ref|NM_001012609.1| Gallus gallus gonadotropin-releasing hormone receptor (GNRHR), mRNA
          Length = 1608

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 402 cagcggcagcatcctgccctgttccc 427
           |||| |||||||||||||||||||||
Sbjct: 174 cagctgcagcatcctgccctgttccc 149
to top
>gb|AY895154.1| Gallus gallus gonadotropin releasing hormone receptor 2 mRNA,
           complete cds
          Length = 1608

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 402 cagcggcagcatcctgccctgttccc 427
           |||| |||||||||||||||||||||
Sbjct: 174 cagctgcagcatcctgccctgttccc 149
to top
>gb|AC126607.7| Mus musculus chromosome 6, clone RP24-113M16, complete sequence
          Length = 171856

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 374   acccaagaggatgaagacgac 394
             |||||||||||||||||||||
Sbjct: 63172 acccaagaggatgaagacgac 63152
to top
>gb|AC140441.3| Mus musculus BAC clone RP23-82A21 from chromosome 5, complete sequence
          Length = 177052

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 270   tcaagaagatatcagaggatg 290
             |||||||||||||||||||||
Sbjct: 36462 tcaagaagatatcagaggatg 36442
to top
>gb|AE005677.1| Caulobacter crescentus CB15 section 3 of 359 of the complete genome
          Length = 14299

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 218   cgggtgaagacggtgaaggcc 238
             |||||||||||||||||||||
Sbjct: 13217 cgggtgaagacggtgaaggcc 13237
to top
>gb|AC135644.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0085H07, complete sequence
          Length = 133291

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 128   gcgcacgccattgaagactgcatcgaccgcttcatgcaccg 168
             ||||||| ||| || |||||| ||||||||||| |||||||
Sbjct: 28433 gcgcacgacatcgaggactgcgtcgaccgcttcttgcaccg 28393
to top
>dbj|AK066559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074H11, full
           insert sequence
          Length = 3799

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 128 gcgcacgccattgaagactgcatcgaccgcttcatgcaccg 168
           ||||||| ||| || |||||| ||||||||||| |||||||
Sbjct: 302 gcgcacgacatcgaggactgcgtcgaccgcttcttgcaccg 342
to top
>gb|BC106516.1| Xenopus laevis cDNA clone IMAGE:7394056
          Length = 1000

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 378 aagaggatgaagacgacgac 397
           ||||||||||||||||||||
Sbjct: 56  aagaggatgaagacgacgac 75
to top
>gb|BC082222.1| Xenopus laevis cDNA clone IMAGE:7204317
          Length = 964

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 378 aagaggatgaagacgacgac 397
           ||||||||||||||||||||
Sbjct: 24  aagaggatgaagacgacgac 43
to top
>gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0042J05, complete sequence
          Length = 150295

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     acatcaatttcatcaagtat 26
             ||||||||||||||||||||
Sbjct: 92071 acatcaatttcatcaagtat 92090
to top
>ref|XM_502193.1| Yarrowia lipolytica CLIB122, YALI0C23727g predicted mRNA
          Length = 1224

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 atccaggagctcaagaagat 279
           ||||||||||||||||||||
Sbjct: 328 atccaggagctcaagaagat 347
to top
>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome
          Length = 2414465

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 263     caggagctcaagaagatatc 282
               ||||||||||||||||||||
Sbjct: 1502360 caggagctcaagaagatatc 1502379
to top
>dbj|AK094011.1| Homo sapiens cDNA FLJ36692 fis, clone UTERU2008845, highly similar to
            Homo sapiens mRNA for RIE2 sid2705
          Length = 3041

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 256  ggctatccaggagctcaaga 275
            ||||||||||||||||||||
Sbjct: 1494 ggctatccaggagctcaaga 1513
to top
>gb|AC104305.2| Homo sapiens chromosome 3 clone RP11-523D22, complete sequence
          Length = 149858

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 261    tccaggagctcaagaagata 280
              ||||||||||||||||||||
Sbjct: 138286 tccaggagctcaagaagata 138305
to top
>gb|AC137935.2| Homo sapiens chromosome 3 clone RP11-626A1, complete sequence
          Length = 175912

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 261  tccaggagctcaagaagata 280
            ||||||||||||||||||||
Sbjct: 8597 tccaggagctcaagaagata 8616
to top
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 260     atccaggagctcaagaagat 279
               ||||||||||||||||||||
Sbjct: 3183021 atccaggagctcaagaagat 3183040


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,390,570
Number of Sequences: 3902068
Number of extensions: 3390570
Number of successful extensions: 74069
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73903
Number of HSP's gapped (non-prelim): 166
length of query: 495
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 473
effective length of database: 17,147,199,772
effective search space: 8110625492156
effective search space used: 8110625492156
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top