>ref|XM_474928.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2925

 Score =  184 bits (93), Expect = 1e-43
 Identities = 141/157 (89%)
 Strand = Plus / Plus

                                                                       
Query: 233 tgggtggacggctcctggacggtggactgctcctgcggcgtcaccttcgacgacggcgag 292
           |||| ||| ||||| ||||||||||||||||| |||||| |||| | ||||||||| |||
Sbjct: 100 tggggggatggctcgtggacggtggactgctcgtgcggcatcacgtacgacgacggggag 159

                                                                       
Query: 293 gagatggtgagttgcgacgactgcagcgtctgggtgcacacgcggtgcgcgcgctacgtc 352
           ||||||||||| |||||||| |||| |||||||||||||||||||||||| |||||||||
Sbjct: 160 gagatggtgagctgcgacgagtgcaacgtctgggtgcacacgcggtgcgcccgctacgtc 219

                                                
Query: 353 cggggcgtgcacacctccttctcctgccacaactgca 389
           || |||||||||| ||| ||||| |||||||||||||
Sbjct: 220 cgcggcgtgcacatctctttctcttgccacaactgca 256

>emb|AL606601.3|OSJN00029 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055H05,
              complete sequence
          Length = 152329

 Score =  184 bits (93), Expect = 1e-43
 Identities = 141/157 (89%)
 Strand = Plus / Minus

                                                                          
Query: 233    tgggtggacggctcctggacggtggactgctcctgcggcgtcaccttcgacgacggcgag 292
              |||| ||| ||||| ||||||||||||||||| |||||| |||| | ||||||||| |||
Sbjct: 146800 tggggggatggctcgtggacggtggactgctcgtgcggcatcacgtacgacgacggggag 146741

                                                                          
Query: 293    gagatggtgagttgcgacgactgcagcgtctgggtgcacacgcggtgcgcgcgctacgtc 352
              ||||||||||| |||||||| |||| |||||||||||||||||||||||| |||||||||
Sbjct: 146740 gagatggtgagctgcgacgagtgcaacgtctgggtgcacacgcggtgcgcccgctacgtc 146681

                                                   
Query: 353    cggggcgtgcacacctccttctcctgccacaactgca 389
              || |||||||||| ||| ||||| |||||||||||||
Sbjct: 146680 cgcggcgtgcacatctctttctcttgccacaactgca 146644



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 121    ctcgccgccgatgaagggcggccggctgcaccg 153
              |||||||||||||||||| |||||  |||||||
Sbjct: 146909 ctcgccgccgatgaaggggggccgcttgcaccg 146877

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  184 bits (93), Expect = 1e-43
 Identities = 141/157 (89%)
 Strand = Plus / Minus

                                                                           
Query: 233     tgggtggacggctcctggacggtggactgctcctgcggcgtcaccttcgacgacggcgag 292
               |||| ||| ||||| ||||||||||||||||| |||||| |||| | ||||||||| |||
Sbjct: 8084676 tggggggatggctcgtggacggtggactgctcgtgcggcatcacgtacgacgacggggag 8084617

                                                                           
Query: 293     gagatggtgagttgcgacgactgcagcgtctgggtgcacacgcggtgcgcgcgctacgtc 352
               ||||||||||| |||||||| |||| |||||||||||||||||||||||| |||||||||
Sbjct: 8084616 gagatggtgagctgcgacgagtgcaacgtctgggtgcacacgcggtgcgcccgctacgtc 8084557

                                                    
Query: 353     cggggcgtgcacacctccttctcctgccacaactgca 389
               || |||||||||| ||| ||||| |||||||||||||
Sbjct: 8084556 cgcggcgtgcacatctctttctcttgccacaactgca 8084520



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 121     ctcgccgccgatgaagggcggccggctgcaccg 153
               |||||||||||||||||| |||||  |||||||
Sbjct: 8084785 ctcgccgccgatgaaggggggccgcttgcaccg 8084753



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 55     tcctcctcccccttccacccaaac 78
              |||||||||||||||| |||||||
Sbjct: 613306 tcctcctcccccttcctcccaaac 613283

>emb|AL606597.4|OSJN00042 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0045P24,
             complete sequence
          Length = 124420

 Score =  184 bits (93), Expect = 1e-43
 Identities = 141/157 (89%)
 Strand = Plus / Minus

                                                                         
Query: 233   tgggtggacggctcctggacggtggactgctcctgcggcgtcaccttcgacgacggcgag 292
             |||| ||| ||||| ||||||||||||||||| |||||| |||| | ||||||||| |||
Sbjct: 18208 tggggggatggctcgtggacggtggactgctcgtgcggcatcacgtacgacgacggggag 18149

                                                                         
Query: 293   gagatggtgagttgcgacgactgcagcgtctgggtgcacacgcggtgcgcgcgctacgtc 352
             ||||||||||| |||||||| |||| |||||||||||||||||||||||| |||||||||
Sbjct: 18148 gagatggtgagctgcgacgagtgcaacgtctgggtgcacacgcggtgcgcccgctacgtc 18089

                                                  
Query: 353   cggggcgtgcacacctccttctcctgccacaactgca 389
             || |||||||||| ||| ||||| |||||||||||||
Sbjct: 18088 cgcggcgtgcacatctctttctcttgccacaactgca 18052



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 121   ctcgccgccgatgaagggcggccggctgcaccg 153
             |||||||||||||||||| |||||  |||||||
Sbjct: 18317 ctcgccgccgatgaaggggggccgcttgcaccg 18285

>dbj|AK100967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142I15, full
           insert sequence
          Length = 3546

 Score =  184 bits (93), Expect = 1e-43
 Identities = 141/157 (89%)
 Strand = Plus / Plus

                                                                       
Query: 233 tgggtggacggctcctggacggtggactgctcctgcggcgtcaccttcgacgacggcgag 292
           |||| ||| ||||| ||||||||||||||||| |||||| |||| | ||||||||| |||
Sbjct: 410 tggggggatggctcgtggacggtggactgctcgtgcggcatcacgtacgacgacggggag 469

                                                                       
Query: 293 gagatggtgagttgcgacgactgcagcgtctgggtgcacacgcggtgcgcgcgctacgtc 352
           ||||||||||| |||||||| |||| |||||||||||||||||||||||| |||||||||
Sbjct: 470 gagatggtgagctgcgacgagtgcaacgtctgggtgcacacgcggtgcgcccgctacgtc 529

                                                
Query: 353 cggggcgtgcacacctccttctcctgccacaactgca 389
           || |||||||||| ||| ||||| |||||||||||||
Sbjct: 530 cgcggcgtgcacatctctttctcttgccacaactgca 566



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 121 ctcgccgccgatgaagggcggccggctgcaccg 153
           |||||||||||||||||| |||||  |||||||
Sbjct: 301 ctcgccgccgatgaaggggggccgcttgcaccg 333

>gb|AY023244.1| Oryza sativa microsatellite MRG5569 containing (GGA)X8, closest to
           marker RG541, genomic sequence
          Length = 224

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 48  ccacgcctcctcctcccccttccacc 73
           |||||||||||||||||||| |||||
Sbjct: 209 ccacgcctcctcctccccctaccacc 184

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 48       ccacgcctcctcctcccccttccacc 73
                |||||||||||||||||||| |||||
Sbjct: 32019486 ccacgcctcctcctccccctaccacc 32019511

>dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0512C01
          Length = 176261

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 48    ccacgcctcctcctcccccttccacc 73
             |||||||||||||||||||| |||||
Sbjct: 61300 ccacgcctcctcctccccctaccacc 61325

>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0460E08
          Length = 170021

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 48     ccacgcctcctcctcccccttccacc 73
              |||||||||||||||||||| |||||
Sbjct: 116213 ccacgcctcctcctccccctaccacc 116238

>ref|NM_001031210.1| Gallus gallus YY1 transcription factor (YY1), mRNA
          Length = 2612

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 54  ctcctcctcccccttccacccaaac 78
           ||||||||||||||||||| |||||
Sbjct: 165 ctcctcctcccccttccacacaaac 141

>gb|AC114551.12| Mus musculus chromosome 3, clone RP23-301O12, complete sequence
          Length = 189791

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 54     ctcctcctcccccttccaccc 74
              |||||||||||||||||||||
Sbjct: 155647 ctcctcctcccccttccaccc 155667

>gb|AC124580.5| Mus musculus BAC clone RP23-114G7 from chromosome 12, complete sequence
          Length = 176245

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 55     tcctcctcccccttccaccca 75
              |||||||||||||||||||||
Sbjct: 116016 tcctcctcccccttccaccca 116036

>emb|AL162719.18| Human DNA sequence from clone RP11-461D23 on chromosome 6 Contains
            part of a putative novel transcript, complete sequence
          Length = 91219

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 56   cctcctcccccttccacccaa 76
            |||||||||||||||||||||
Sbjct: 4981 cctcctcccccttccacccaa 5001

>emb|X60178.1|HGYRAB Haloferax sp. Aa2.2 gyrA gene for a subunit of DNA gyrase
          Length = 2813

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 277  cttcgacgacggcgaggagat 297
            |||||||||||||||||||||
Sbjct: 1828 cttcgacgacggcgaggagat 1848

>emb|AL669844.20| Mouse DNA sequence from clone RP23-395O6 on chromosome 11 Contains the 3'
              end of a novel gene, a novel gene, the Stk10 gene for
              serine/threonine kinase 10, the 5' end of the Fbxw1b gene
              for F-box and WD-40 domain protein 1B and two CpG islands,
              complete sequence
          Length = 221145

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 54     ctcctcctcccccttccaccc 74
              |||||||||||||||||||||
Sbjct: 149588 ctcctcctcccccttccaccc 149608

>emb|AJ719349.1| Gallus gallus mRNA for hypothetical protein, clone 1i20
          Length = 2612

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 54  ctcctcctcccccttccacccaaac 78
           ||||||||||||||||||| |||||
Sbjct: 165 ctcctcctcccccttccacacaaac 141

>gb|AC090488.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0081F12 from chromosome 10, complete sequence
          Length = 128388

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 122   tcgccgccgatgaagggcggc 142
             |||||||||||||||||||||
Sbjct: 95602 tcgccgccgatgaagggcggc 95622

>gb|AC011811.42| Homo sapiens clone b250a12, complete sequence
          Length = 231739

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 53    cctcctcctcccccttccacc 73
             |||||||||||||||||||||
Sbjct: 75416 cctcctcctcccccttccacc 75396

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 122     tcgccgccgatgaagggcggc 142
               |||||||||||||||||||||
Sbjct: 4433994 tcgccgccgatgaagggcggc 4434014

>gb|AC073476.6| Homo sapiens BAC clone RP11-690I21 from 2, complete sequence
          Length = 182559

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 53    cctcctcctcccccttccacc 73
             |||||||||||||||||||||
Sbjct: 16405 cctcctcctcccccttccacc 16425

>dbj|AK067281.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100H18, full
           insert sequence
          Length = 1521

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 122 tcgccgccgatgaagggcggc 142
           |||||||||||||||||||||
Sbjct: 55  tcgccgccgatgaagggcggc 75

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 122     tcgccgccgatgaagggcggc 142
               |||||||||||||||||||||
Sbjct: 4434815 tcgccgccgatgaagggcggc 4434835

>gb|AC151572.2| Mus musculus BAC clone RP23-388I22 from 1, complete sequence
          Length = 187409

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 55    tcctcctcccccttccaccca 75
             |||||||||||||||||||||
Sbjct: 46695 tcctcctcccccttccaccca 46715

>ref|XM_466267.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1200

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 48  ccacgcctcctcctccccct 67
           ||||||||||||||||||||
Sbjct: 381 ccacgcctcctcctccccct 362

>gb|AC156548.13| Mus musculus chromosome 5, clone RP23-412C8, complete sequence
          Length = 197890

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    cctcctcctcccccttccac 72
             ||||||||||||||||||||
Sbjct: 13123 cctcctcctcccccttccac 13142

>gb|AC111126.16| Mus musculus chromosome 5, clone RP23-336F4, complete sequence
          Length = 236880

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    cctcctcctcccccttccac 72
             ||||||||||||||||||||
Sbjct: 42056 cctcctcctcccccttccac 42037

>gb|AC116025.21| Homo sapiens chromosome 17, clone CTD-2529O21, complete sequence
          Length = 209109

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     ccctcgtccacgcctcctcc 60
              ||||||||||||||||||||
Sbjct: 164462 ccctcgtccacgcctcctcc 164443

>gb|AC091928.3| Homo sapiens chromosome 5 clone RP11-292F10, complete sequence
          Length = 200923

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     gcctcctcctcccccttcca 71
              ||||||||||||||||||||
Sbjct: 152507 gcctcctcctcccccttcca 152488

>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 282     acgacggcgaggagatggtg 301
               ||||||||||||||||||||
Sbjct: 1975688 acgacggcgaggagatggtg 1975669

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 48       ccacgcctcctcctccccct 67
                ||||||||||||||||||||
Sbjct: 21385388 ccacgcctcctcctccccct 21385369

>gb|AC073916.41| Homo sapiens 12 BAC RP11-408I18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 205283

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    cgcctcctcctcccccttcc 70
             ||||||||||||||||||||
Sbjct: 10319 cgcctcctcctcccccttcc 10300

>gb|AC116351.2| Homo sapiens chromosome 5 clone RP11-43F13, complete sequence
          Length = 187289

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 284   gacggcgaggagatggtgag 303
             ||||||||||||||||||||
Sbjct: 90837 gacggcgaggagatggtgag 90856



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 284   gacggcgaggagatggtgag 303
             ||||||||||||||||||||
Sbjct: 90804 gacggcgaggagatggtgag 90823

>ref|XM_229186.3| PREDICTED: Rattus norvegicus similar to G protein-coupled receptor
            101 (LOC317608), mRNA
          Length = 2721

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 227  gacgactgggtggacggctc 246
            ||||||||||||||||||||
Sbjct: 2323 gacgactgggtggacggctc 2304

>gb|AF115559.1|HSSMTNS09 Homo sapiens smoothelin (SMTN) gene, exon 9
          Length = 596

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 364 cacctccttctcctgccaca 383
           ||||||||||||||||||||
Sbjct: 260 cacctccttctcctgccaca 241

>dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1712_E04
          Length = 110098

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    ccacgcctcctcctccccct 67
             ||||||||||||||||||||
Sbjct: 45341 ccacgcctcctcctccccct 45322

>gb|AC005005.1|AC005005 Homo sapiens PAC clone RP3-412A9 from 22, complete sequence
          Length = 133893

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 364   cacctccttctcctgccaca 383
             ||||||||||||||||||||
Sbjct: 87504 cacctccttctcctgccaca 87523

>emb|AL606616.3|OSJN00070 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060M15,
            complete sequence
          Length = 119918

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 55   tcctcctcccccttccacccaaac 78
            |||||||||||||||| |||||||
Sbjct: 4178 tcctcctcccccttcctcccaaac 4155


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,813,951
Number of Sequences: 3902068
Number of extensions: 2813951
Number of successful extensions: 70770
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70424
Number of HSP's gapped (non-prelim): 346
length of query: 398
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 376
effective length of database: 17,147,199,772
effective search space: 6447347114272
effective search space used: 6447347114272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)