ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl01f05 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 103 bits (256), Expect = 3e-22 Identities = 54/122 (44%), Positives = 73/122 (59%), Gaps = 18/122 (14%) Frame = +2 Query: 137 IKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITIVRYVLPSEDHTIQKLLLLY---- 304 +K DLE DV +K EA+K+ ++++LNGE LP L +TI+R+VLP +DHTI+KLLL++ Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85 Query: 305 --------------LICQNLRNNLQHPNEYIRGVTLRFLCRXXXXXXXXXXXXXILKNLE 442 L+C R +LQHPNE+IRG TLRFLC+ I LE Sbjct: 86 PKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLE 145 Query: 443 HR 448 HR Sbjct: 146 HR 147
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 103 bits (256), Expect = 3e-22 Identities = 54/122 (44%), Positives = 73/122 (59%), Gaps = 18/122 (14%) Frame = +2 Query: 137 IKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITIVRYVLPSEDHTIQKLLLLY---- 304 +K DLE DV +K EA+K+ ++++LNGE LP L +TI+R+VLP +DHTI+KLLL++ Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85 Query: 305 --------------LICQNLRNNLQHPNEYIRGVTLRFLCRXXXXXXXXXXXXXILKNLE 442 L+C R +LQHPNE+IRG TLRFLC+ I LE Sbjct: 86 PKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLE 145 Query: 443 HR 448 HR Sbjct: 146 HR 147
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 103 bits (256), Expect = 3e-22 Identities = 54/122 (44%), Positives = 73/122 (59%), Gaps = 18/122 (14%) Frame = +2 Query: 137 IKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITIVRYVLPSEDHTIQKLLLLY---- 304 +K DLE DV +K EA+K+ ++++LNGE LP L +TI+R+VLP +DHTI+KLLL++ Sbjct: 26 LKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIV 85 Query: 305 --------------LICQNLRNNLQHPNEYIRGVTLRFLCRXXXXXXXXXXXXXILKNLE 442 L+C R +LQHPNE+IRG TLRFLC+ I LE Sbjct: 86 PKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLE 145 Query: 443 HR 448 HR Sbjct: 146 HR 147
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 97.4 bits (241), Expect = 1e-20 Identities = 51/123 (41%), Positives = 70/123 (56%), Gaps = 18/123 (14%) Frame = +2 Query: 134 EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITIVRYVLPSEDHTIQKLLLLY--- 304 ++K DLE D K+E +KR + LLLNGE P L +TI+R+VLP ++HTI+KLLL++ Sbjct: 23 QLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVLPVQNHTIKKLLLIFWEI 82 Query: 305 ---------------LICQNLRNNLQHPNEYIRGVTLRFLCRXXXXXXXXXXXXXILKNL 439 L+C R +LQHPNE++RG TLRFLC+ I L Sbjct: 83 VPKTSADGKLLQEMILVCDAYRKDLQHPNEFLRGSTLRFLCKLKEPELLEPLMPAIRACL 142 Query: 440 EHR 448 +HR Sbjct: 143 DHR 145
>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 940 Score = 87.4 bits (215), Expect = 1e-17 Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 18/136 (13%) Frame = +2 Query: 95 LVHFDKGSAAMVNEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITIVRYVLPSED 274 LV D A V+ +K LE + K+ AMK + +++NG++LP++ + ++R+V+PS + Sbjct: 6 LVQQDFLEAPSVDALKTSLESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVMPSRN 65 Query: 275 HTIQKLLLLY------------------LICQNLRNNLQHPNEYIRGVTLRFLCRXXXXX 400 ++KLL Y L C + RN+LQHPNE+IRG TLRFLC+ Sbjct: 66 KELKKLLYYYWEVCPKYNNDGTMKQEMILACNSFRNDLQHPNEFIRGATLRFLCKLKEPE 125 Query: 401 XXXXXXXXILKNLEHR 448 + + LEHR Sbjct: 126 LLDPLIPTVRQCLEHR 141
>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 973 Score = 72.4 bits (176), Expect = 5e-13 Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 18/121 (14%) Frame = +2 Query: 140 KADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITIVRYVLPSEDHTIQKLLLLY----- 304 KA +GSD K++ MK ++ +L G +P L + I+R+V+PS++ ++KLL Y Sbjct: 30 KALEKGSD-EQKIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKKLLYFYWEIVP 88 Query: 305 -------------LICQNLRNNLQHPNEYIRGVTLRFLCRXXXXXXXXXXXXXILKNLEH 445 L+C ++++LQHPNEYIRG TLRFL + +L LE+ Sbjct: 89 KLAEDGKLRHEMILVCNAIQHDLQHPNEYIRGNTLRFLTKLREAELLEQMVPSVLACLEY 148 Query: 446 R 448 R Sbjct: 149 R 149
>MOAC_STRCO (Q9RKA8) Molybdenum cofactor biosynthesis protein C| Length = 170 Score = 30.4 bits (67), Expect = 2.1 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Frame = +2 Query: 47 TTINPPAGAMDKPSTLLVHFDKGSAAMVNEIKADLEGSDVAAKVEAMKRAVML------L 208 +T + P+G+ P L H D+ AA + D+ G DV A+ V++ L Sbjct: 2 STQDRPSGSGQDPQDRLTHIDEAGAARM----VDVSGKDVTARTARASGRVLVAPRVVEL 57 Query: 209 LNGETLP 229 L GE +P Sbjct: 58 LRGEGVP 64
>L_VSVJO (P16379) Large structural protein (L protein) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2109 Score = 30.4 bits (67), Expect = 2.1 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 21/103 (20%) Frame = +2 Query: 98 VHFDKGSAAMVNEIKADLEGSD--VAAKVEAMKRAVMLLLNGETLPTLFITIVRYVLPSE 271 +H KG +N I D+E D ++ K+E++ R + +L ++ T Y+ E Sbjct: 1746 LHLKKGCGMSINLITMDMEVQDSVISYKIESLVRQYVPVLLESDGCLIYKTYGTYIATQE 1805 Query: 272 D----------HTIQKLLL---------LYLICQNLRNNLQHP 343 D H++Q + LYL+C+ L++ + P Sbjct: 1806 DNSLTLIGSLFHSVQLVQTDLSSSNTSELYLVCRRLKDYVDTP 1848
>NIGB_SAMNI (P33183) Nigrin b precursor (Agglutinin V) (SNAV) [Contains: Nigrin| b A chain (EC 3.2.2.22) (rRNA N-glycosidase); Nigrin b B chain] Length = 563 Score = 29.6 bits (65), Expect = 3.5 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = -2 Query: 198 TARFMASTLAATSLPSRSALISF--TMAAEPLSKWTSSVDGLSMAPAGGLM 52 T R M + A L + S ++ F + AAE KW +DG + P+ GL+ Sbjct: 353 TIRSMGKCMTANGLNNGSNIVIFNCSTAAENAIKWEVPIDGSIINPSSGLV 403
>NU133_MOUSE (Q8R0G9) Nuclear pore complex protein Nup133 (Nucleoporin Nup133)| (133 kDa nucleoporin) Length = 1155 Score = 29.3 bits (64), Expect = 4.6 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = +2 Query: 137 IKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITIVRYVLPSED-HTIQKLLLLYLIC 313 + +D+ + K+EAM LL+ ETLP +T + L + T +L+ LY+ Sbjct: 978 LASDISEDRLQEKIEAMAEQERFLLHQETLPEQLLTERQLSLSAMPVLTAPQLISLYICD 1037 Query: 314 QNLRNN 331 +N R N Sbjct: 1038 ENRRAN 1043
>WASIP_MOUSE (Q8K1I7) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 493 Score = 28.9 bits (63), Expect = 6.0 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Frame = +2 Query: 8 PPRSRSTLPRPD----PTTINPPAGAMDKPSTLLVHFDKGSAAMVNEIKADLEGSDVAA 172 PPR+R PRPD P ++ PP +P +H ++GS A + + G+ AA Sbjct: 165 PPRNRMPPPRPDVGSKPDSLPPPVPNTPRPVPSSLH-NRGSPAGLGAPRPPFPGNRGAA 222
>WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 487 Score = 28.9 bits (63), Expect = 6.0 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Frame = +2 Query: 8 PPRSRSTLPRPD----PTTINPPAGAMDKPSTLLVHFDKGSAAMVNEIKADLEGSDVAA 172 PPR+R PRPD P ++ PP +P +H ++GS A + + G+ AA Sbjct: 160 PPRNRMPPPRPDVGSKPDSLPPPVPNTPRPIPSSLH-NRGSPAGLGAPRPPFPGNRGAA 217
>GUXC_FUSOX (P46238) Putative exoglucanase type C precursor (EC 3.2.1.91)| (Exocellobiohydrolase I) (1,4-beta-cellobiohydrolase) (Beta-glucancellobiohydrolase) Length = 514 Score = 28.9 bits (63), Expect = 6.0 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = +2 Query: 5 NPPRSRSTLPRPDPTTINPPAGAMDK 82 NPP S ST PT NPPAG++D+ Sbjct: 459 NPPASSSTTGSSTPT--NPPAGSVDQ 482
>ANPRC_MOUSE (P70180) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) (EF-2) Length = 536 Score = 28.5 bits (62), Expect = 7.9 Identities = 14/54 (25%), Positives = 31/54 (57%) Frame = +2 Query: 116 SAAMVNEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITIVRYVLPSEDH 277 SA +E K DL+ D+ ++ +R V++ +G+T+ + + + R+ + S D+ Sbjct: 227 SAYNFDETK-DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279
>Y157_MYCPN (P75588) Hypothetical protein MG144 homolog (VXpSPT7_orf402)| Length = 402 Score = 28.5 bits (62), Expect = 7.9 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +2 Query: 8 PPRSRSTLPRPDPTTINPPAGAMDKP 85 P ++ T P+ +PT + PP G KP Sbjct: 153 PVKTEPTSPKVEPTKVKPPGGVPTKP 178
>RSNL2_MOUSE (Q8CI96) Restin-like protein 2| Length = 704 Score = 28.5 bits (62), Expect = 7.9 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Frame = +2 Query: 107 DKG---SAAMVNEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITIVRYVLPSEDH 277 DKG + + + + LE +D AA + +K+ +LL+ LP T + VLP+ DH Sbjct: 218 DKGQIPAEVVPDPVDMPLEMADAAAIAKEIKQ---MLLDAVPLPC---TSAKAVLPNSDH 271 Query: 278 TIQKLLLLYL 307 T + +L L Sbjct: 272 TTSRAMLTSL 281
>ANPRC_RAT (P41740) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) Length = 535 Score = 28.5 bits (62), Expect = 7.9 Identities = 14/54 (25%), Positives = 31/54 (57%) Frame = +2 Query: 116 SAAMVNEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITIVRYVLPSEDH 277 SA +E K DL+ D+ ++ +R V++ +G+T+ + + + R+ + S D+ Sbjct: 227 SAYNFDETK-DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279
>KTNA1_RAT (Q6E0V2) Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3)| (Katanin p60 subunit A1) (p60 katanin) Length = 491 Score = 28.5 bits (62), Expect = 7.9 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Frame = +2 Query: 11 PRSRSTLPRPDPTTINPPAGAM---DKPSTLLVHFDKGSAAMVNEIKADLEGSDVAAKVE 181 PR R + DP + GA+ +PS +H D+G A E K +G + K+ Sbjct: 112 PRKRQSTQHSDPKPHSNRPGAVVRAHRPSAQSLHSDRGKAVRSREKKEQSKGREEKNKLP 171 Query: 182 A 184 A Sbjct: 172 A 172 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,785,793 Number of Sequences: 219361 Number of extensions: 888561 Number of successful extensions: 4531 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3800 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4497 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
