Clone Name | bastl01f05 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3111 Score = 289 bits (146), Expect = 4e-75 Identities = 218/242 (90%) Strand = Plus / Plus Query: 66 ccggcgccatggacaagccgtcgacgctgcttgtccacttcgacaagggctccgccgcca 125 ||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 251 ccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgccgcca 310 Query: 126 tggtgaacgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggcca 185 ||| ||||||||||||||||| |||||||||||||| ||||||||||| || |||| Sbjct: 311 tggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtggacgcca 370 Query: 186 tgaagcgcgccgtcatgctcctcctcaatggcgagacactgcctacgctcttcatcacca 245 |||||||||||||||||||||||||||| |||||||| || || || |||||||||||| Sbjct: 371 tgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcatcaccg 430 Query: 246 tcgtccgctacgtcctcccttccgaggatcacaccattcagaagctgctgctcctctacc 305 ||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||| Sbjct: 431 tcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcctctacc 490 Query: 306 tc 307 || Sbjct: 491 tc 492 Score = 161 bits (81), Expect = 2e-36 Identities = 129/145 (88%) Strand = Plus / Plus Query: 304 cctcatctgccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgt 363 |||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct: 543 cctcatctgccagaacctccgcaacaacctccaccaccccaacgagtacatccgcggcgt 602 Query: 364 cacgctgcggttcctctgccgcctctccgagctggaggtgcttgagccgctcgtcccttc 423 ||| || || |||||||||||||||||||||| |||||||| ||||||||||| || || Sbjct: 603 caccctccgcttcctctgccgcctctccgagcccgaggtgctcgagccgctcgtgccctc 662 Query: 424 cattcttaagaatctcgagcaccgc 448 ||| || |||| ||||| |||||| Sbjct: 663 catcctcgagaacctcgaccaccgc 687
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 289 bits (146), Expect = 4e-75 Identities = 218/242 (90%) Strand = Plus / Minus Query: 66 ccggcgccatggacaagccgtcgacgctgcttgtccacttcgacaagggctccgccgcca 125 ||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 10025973 ccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgccgcca 10025914 Query: 126 tggtgaacgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggcca 185 ||| ||||||||||||||||| |||||||||||||| ||||||||||| || |||| Sbjct: 10025913 tggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtggacgcca 10025854 Query: 186 tgaagcgcgccgtcatgctcctcctcaatggcgagacactgcctacgctcttcatcacca 245 |||||||||||||||||||||||||||| |||||||| || || || |||||||||||| Sbjct: 10025853 tgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcatcaccg 10025794 Query: 246 tcgtccgctacgtcctcccttccgaggatcacaccattcagaagctgctgctcctctacc 305 ||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||| Sbjct: 10025793 tcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcctctacc 10025734 Query: 306 tc 307 || Sbjct: 10025733 tc 10025732 Score = 161 bits (81), Expect = 2e-36 Identities = 129/145 (88%) Strand = Plus / Minus Query: 304 cctcatctgccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgt 363 |||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct: 10025681 cctcatctgccagaacctccgcaacaacctccaccaccccaacgagtacatccgcggcgt 10025622 Query: 364 cacgctgcggttcctctgccgcctctccgagctggaggtgcttgagccgctcgtcccttc 423 ||| || || |||||||||||||||||||||| |||||||| ||||||||||| || || Sbjct: 10025621 caccctccgcttcctctgccgcctctccgagcccgaggtgctcgagccgctcgtgccctc 10025562 Query: 424 cattcttaagaatctcgagcaccgc 448 ||| || |||| ||||| |||||| Sbjct: 10025561 catcctcgagaacctcgaccaccgc 10025537
>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1085F09 Length = 132713 Score = 289 bits (146), Expect = 4e-75 Identities = 218/242 (90%) Strand = Plus / Minus Query: 66 ccggcgccatggacaagccgtcgacgctgcttgtccacttcgacaagggctccgccgcca 125 ||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 106255 ccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgccgcca 106196 Query: 126 tggtgaacgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggcca 185 ||| ||||||||||||||||| |||||||||||||| ||||||||||| || |||| Sbjct: 106195 tggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtggacgcca 106136 Query: 186 tgaagcgcgccgtcatgctcctcctcaatggcgagacactgcctacgctcttcatcacca 245 |||||||||||||||||||||||||||| |||||||| || || || |||||||||||| Sbjct: 106135 tgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcatcaccg 106076 Query: 246 tcgtccgctacgtcctcccttccgaggatcacaccattcagaagctgctgctcctctacc 305 ||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||| Sbjct: 106075 tcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcctctacc 106016 Query: 306 tc 307 || Sbjct: 106015 tc 106014 Score = 161 bits (81), Expect = 2e-36 Identities = 129/145 (88%) Strand = Plus / Minus Query: 304 cctcatctgccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgt 363 |||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct: 105963 cctcatctgccagaacctccgcaacaacctccaccaccccaacgagtacatccgcggcgt 105904 Query: 364 cacgctgcggttcctctgccgcctctccgagctggaggtgcttgagccgctcgtcccttc 423 ||| || || |||||||||||||||||||||| |||||||| ||||||||||| || || Sbjct: 105903 caccctccgcttcctctgccgcctctccgagcccgaggtgctcgagccgctcgtgccctc 105844 Query: 424 cattcttaagaatctcgagcaccgc 448 ||| || |||| ||||| |||||| Sbjct: 105843 catcctcgagaacctcgaccaccgc 105819
>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0036E02 Length = 145931 Score = 289 bits (146), Expect = 4e-75 Identities = 218/242 (90%) Strand = Plus / Minus Query: 66 ccggcgccatggacaagccgtcgacgctgcttgtccacttcgacaagggctccgccgcca 125 ||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 120466 ccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgccgcca 120407 Query: 126 tggtgaacgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggcca 185 ||| ||||||||||||||||| |||||||||||||| ||||||||||| || |||| Sbjct: 120406 tggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtggacgcca 120347 Query: 186 tgaagcgcgccgtcatgctcctcctcaatggcgagacactgcctacgctcttcatcacca 245 |||||||||||||||||||||||||||| |||||||| || || || |||||||||||| Sbjct: 120346 tgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcatcaccg 120287 Query: 246 tcgtccgctacgtcctcccttccgaggatcacaccattcagaagctgctgctcctctacc 305 ||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||| Sbjct: 120286 tcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcctctacc 120227 Query: 306 tc 307 || Sbjct: 120226 tc 120225 Score = 161 bits (81), Expect = 2e-36 Identities = 129/145 (88%) Strand = Plus / Minus Query: 304 cctcatctgccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgt 363 |||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct: 120174 cctcatctgccagaacctccgcaacaacctccaccaccccaacgagtacatccgcggcgt 120115 Query: 364 cacgctgcggttcctctgccgcctctccgagctggaggtgcttgagccgctcgtcccttc 423 ||| || || |||||||||||||||||||||| |||||||| ||||||||||| || || Sbjct: 120114 caccctccgcttcctctgccgcctctccgagcccgaggtgctcgagccgctcgtgccctc 120055 Query: 424 cattcttaagaatctcgagcaccgc 448 ||| || |||| ||||| |||||| Sbjct: 120054 catcctcgagaacctcgaccaccgc 120030
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence Length = 190721 Score = 234 bits (118), Expect = 2e-58 Identities = 187/210 (89%) Strand = Plus / Minus Query: 98 gtccacttcgacaagggctccgccgccatggtgaacgagatcaaggcggatctggagggc 157 ||||||||||||||||||||| || |||||| |||||||||||||| || || |||||| Sbjct: 21405 gtccacttcgacaagggctccccctccatggccaacgagatcaaggccgacctcgagggc 21346 Query: 158 agcgacgtcgccgccaaggtcgaggccatgaagcgcgccgtcatgctcctcctcaatggc 217 ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||| Sbjct: 21345 agcgacgtcgccgccaaggtcgacgccatgaagcgcgccatcatgctgctcctcaacggc 21286 Query: 218 gagacactgcctacgctcttcatcaccatcgtccgctacgtcctcccttccgaggatcac 277 ||||| || || |||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 21285 gagaccctcccccacctcttcatcaccgtcgtccgctacgtcctcccctccgaggaccac 21226 Query: 278 accattcagaagctgctgctcctctacctc 307 ||||| |||||||| || |||||||||||| Sbjct: 21225 accatccagaagctcctcctcctctacctc 21196 Score = 149 bits (75), Expect = 9e-33 Identities = 111/123 (90%) Strand = Plus / Minus Query: 304 cctcatctgccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgt 363 |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || Sbjct: 21142 cctcatctgccagaacctccgcaacaacctccagcaccccaacgagtacatccgcggggt 21083 Query: 364 cacgctgcggttcctctgccgcctctccgagctggaggtgcttgagccgctcgtcccttc 423 ||||||||| ||||||||||||||| ||||| ||| |||| ||||||||| |||| || Sbjct: 21082 cacgctgcgcttcctctgccgcctcaacgagcccgagctgctcgagccgctcatcccgtc 21023 Query: 424 cat 426 ||| Sbjct: 21022 cat 21020
>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24 map S20116S, complete sequence Length = 174210 Score = 234 bits (118), Expect = 2e-58 Identities = 187/210 (89%) Strand = Plus / Minus Query: 98 gtccacttcgacaagggctccgccgccatggtgaacgagatcaaggcggatctggagggc 157 ||||||||||||||||||||| || |||||| |||||||||||||| || || |||||| Sbjct: 170870 gtccacttcgacaagggctccccctccatggccaacgagatcaaggccgacctcgagggc 170811 Query: 158 agcgacgtcgccgccaaggtcgaggccatgaagcgcgccgtcatgctcctcctcaatggc 217 ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||| Sbjct: 170810 agcgacgtcgccgccaaggtcgacgccatgaagcgcgccatcatgctgctcctcaacggc 170751 Query: 218 gagacactgcctacgctcttcatcaccatcgtccgctacgtcctcccttccgaggatcac 277 ||||| || || |||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 170750 gagaccctcccccacctcttcatcaccgtcgtccgctacgtcctcccctccgaggaccac 170691 Query: 278 accattcagaagctgctgctcctctacctc 307 ||||| |||||||| || |||||||||||| Sbjct: 170690 accatccagaagctcctcctcctctacctc 170661 Score = 149 bits (75), Expect = 9e-33 Identities = 111/123 (90%) Strand = Plus / Minus Query: 304 cctcatctgccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgt 363 |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || Sbjct: 170607 cctcatctgccagaacctccgcaacaacctccagcaccccaacgagtacatccgcggggt 170548 Query: 364 cacgctgcggttcctctgccgcctctccgagctggaggtgcttgagccgctcgtcccttc 423 ||||||||| ||||||||||||||| ||||| ||| |||| ||||||||| |||| || Sbjct: 170547 cacgctgcgcttcctctgccgcctcaacgagcccgagctgctcgagccgctcatcccgtc 170488 Query: 424 cat 426 ||| Sbjct: 170487 cat 170485
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 234 bits (118), Expect = 2e-58 Identities = 187/210 (89%) Strand = Plus / Minus Query: 98 gtccacttcgacaagggctccgccgccatggtgaacgagatcaaggcggatctggagggc 157 ||||||||||||||||||||| || |||||| |||||||||||||| || || |||||| Sbjct: 3653733 gtccacttcgacaagggctccccctccatggccaacgagatcaaggccgacctcgagggc 3653674 Query: 158 agcgacgtcgccgccaaggtcgaggccatgaagcgcgccgtcatgctcctcctcaatggc 217 ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||| Sbjct: 3653673 agcgacgtcgccgccaaggtcgacgccatgaagcgcgccatcatgctgctcctcaacggc 3653614 Query: 218 gagacactgcctacgctcttcatcaccatcgtccgctacgtcctcccttccgaggatcac 277 ||||| || || |||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 3653613 gagaccctcccccacctcttcatcaccgtcgtccgctacgtcctcccctccgaggaccac 3653554 Query: 278 accattcagaagctgctgctcctctacctc 307 ||||| |||||||| || |||||||||||| Sbjct: 3653553 accatccagaagctcctcctcctctacctc 3653524 Score = 149 bits (75), Expect = 9e-33 Identities = 111/123 (90%) Strand = Plus / Minus Query: 304 cctcatctgccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgt 363 |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || Sbjct: 3653470 cctcatctgccagaacctccgcaacaacctccagcaccccaacgagtacatccgcggggt 3653411 Query: 364 cacgctgcggttcctctgccgcctctccgagctggaggtgcttgagccgctcgtcccttc 423 ||||||||| ||||||||||||||| ||||| ||| |||| ||||||||| |||| || Sbjct: 3653410 cacgctgcgcttcctctgccgcctcaacgagcccgagctgctcgagccgctcatcccgtc 3653351 Query: 424 cat 426 ||| Sbjct: 3653350 cat 3653348
>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full insert sequence Length = 3332 Score = 234 bits (118), Expect = 2e-58 Identities = 187/210 (89%) Strand = Plus / Plus Query: 98 gtccacttcgacaagggctccgccgccatggtgaacgagatcaaggcggatctggagggc 157 ||||||||||||||||||||| || |||||| |||||||||||||| || || |||||| Sbjct: 138 gtccacttcgacaagggctccccctccatggccaacgagatcaaggccgacctcgagggc 197 Query: 158 agcgacgtcgccgccaaggtcgaggccatgaagcgcgccgtcatgctcctcctcaatggc 217 ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||| Sbjct: 198 agcgacgtcgccgccaaggtcgacgccatgaagcgcgccatcatgctgctcctcaacggc 257 Query: 218 gagacactgcctacgctcttcatcaccatcgtccgctacgtcctcccttccgaggatcac 277 ||||| || || |||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 258 gagaccctcccccacctcttcatcaccgtcgtccgctacgtcctcccctccgaggaccac 317 Query: 278 accattcagaagctgctgctcctctacctc 307 ||||| |||||||| || |||||||||||| Sbjct: 318 accatccagaagctcctcctcctctacctc 347 Score = 141 bits (71), Expect = 2e-30 Identities = 110/123 (89%) Strand = Plus / Plus Query: 304 cctcatctgccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgt 363 ||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||| || Sbjct: 401 cctcatctgcctgaacctccgcaacaacctccagcaccccaacgagtacatccgcggggt 460 Query: 364 cacgctgcggttcctctgccgcctctccgagctggaggtgcttgagccgctcgtcccttc 423 ||||||||| ||||||||||||||| ||||| ||| |||| ||||||||| |||| || Sbjct: 461 cacgctgcgcttcctctgccgcctcaacgagcccgagctgctcgagccgctcatcccgtc 520 Query: 424 cat 426 ||| Sbjct: 521 cat 523
>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full insert sequence Length = 3332 Score = 234 bits (118), Expect = 2e-58 Identities = 187/210 (89%) Strand = Plus / Plus Query: 98 gtccacttcgacaagggctccgccgccatggtgaacgagatcaaggcggatctggagggc 157 ||||||||||||||||||||| || |||||| |||||||||||||| || || |||||| Sbjct: 138 gtccacttcgacaagggctccccctccatggccaacgagatcaaggccgacctcgagggc 197 Query: 158 agcgacgtcgccgccaaggtcgaggccatgaagcgcgccgtcatgctcctcctcaatggc 217 ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||| Sbjct: 198 agcgacgtcgccgccaaggtcgacgccatgaagcgcgccatcatgctgctcctcaacggc 257 Query: 218 gagacactgcctacgctcttcatcaccatcgtccgctacgtcctcccttccgaggatcac 277 ||||| || || |||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 258 gagaccctcccccacctcttcatcaccgtcgtccgctacgtcctcccctccgaggaccac 317 Query: 278 accattcagaagctgctgctcctctacctc 307 ||||| |||||||| || |||||||||||| Sbjct: 318 accatccagaagctcctcctcctctacctc 347 Score = 141 bits (71), Expect = 2e-30 Identities = 110/123 (89%) Strand = Plus / Plus Query: 304 cctcatctgccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgt 363 ||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||| || Sbjct: 401 cctcatctgcctgaacctccgcaacaacctccagcaccccaacgagtacatccgcggggt 460 Query: 364 cacgctgcggttcctctgccgcctctccgagctggaggtgcttgagccgctcgtcccttc 423 ||||||||| ||||||||||||||| ||||| ||| |||| ||||||||| |||| || Sbjct: 461 cacgctgcgcttcctctgccgcctcaacgagcccgagctgctcgagccgctcatcccgtc 520 Query: 424 cat 426 ||| Sbjct: 521 cat 523
>dbj|AK072825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136B14, full insert sequence Length = 1667 Score = 234 bits (118), Expect = 2e-58 Identities = 187/210 (89%) Strand = Plus / Plus Query: 98 gtccacttcgacaagggctccgccgccatggtgaacgagatcaaggcggatctggagggc 157 ||||||||||||||||||||| || |||||| |||||||||||||| || || |||||| Sbjct: 102 gtccacttcgacaagggctccccctccatggccaacgagatcaaggccgacctcgagggc 161 Query: 158 agcgacgtcgccgccaaggtcgaggccatgaagcgcgccgtcatgctcctcctcaatggc 217 ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||| Sbjct: 162 agcgacgtcgccgccaaggtcgacgccatgaagcgcgccatcatgctgctcctcaacggc 221 Query: 218 gagacactgcctacgctcttcatcaccatcgtccgctacgtcctcccttccgaggatcac 277 ||||| || || |||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 222 gagaccctcccccacctcttcatcaccgtcgtccgctacgtcctcccctccgaggaccac 281 Query: 278 accattcagaagctgctgctcctctacctc 307 ||||| |||||||| || |||||||||||| Sbjct: 282 accatccagaagctcctcctcctctacctc 311 Score = 149 bits (75), Expect = 9e-33 Identities = 111/123 (90%) Strand = Plus / Plus Query: 304 cctcatctgccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgt 363 |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || Sbjct: 365 cctcatctgccagaacctccgcaacaacctccagcaccccaacgagtacatccgcggggt 424 Query: 364 cacgctgcggttcctctgccgcctctccgagctggaggtgcttgagccgctcgtcccttc 423 ||||||||| ||||||||||||||| ||||| ||| |||| ||||||||| |||| || Sbjct: 425 cacgctgcgcttcctctgccgcctcaacgagcccgagctgctcgagccgctcatcccgtc 484 Query: 424 cat 426 ||| Sbjct: 485 cat 487
>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full insert sequence Length = 3363 Score = 234 bits (118), Expect = 2e-58 Identities = 187/210 (89%) Strand = Plus / Plus Query: 98 gtccacttcgacaagggctccgccgccatggtgaacgagatcaaggcggatctggagggc 157 ||||||||||||||||||||| || |||||| |||||||||||||| || || |||||| Sbjct: 169 gtccacttcgacaagggctccccctccatggccaacgagatcaaggccgacctcgagggc 228 Query: 158 agcgacgtcgccgccaaggtcgaggccatgaagcgcgccgtcatgctcctcctcaatggc 217 ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||| Sbjct: 229 agcgacgtcgccgccaaggtcgacgccatgaagcgcgccatcatgctgctcctcaacggc 288 Query: 218 gagacactgcctacgctcttcatcaccatcgtccgctacgtcctcccttccgaggatcac 277 ||||| || || |||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 289 gagaccctcccccacctcttcatcaccgtcgtccgctacgtcctcccctccgaggaccac 348 Query: 278 accattcagaagctgctgctcctctacctc 307 ||||| |||||||| || |||||||||||| Sbjct: 349 accatccagaagctcctcctcctctacctc 378 Score = 149 bits (75), Expect = 9e-33 Identities = 111/123 (90%) Strand = Plus / Plus Query: 304 cctcatctgccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgt 363 |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || Sbjct: 432 cctcatctgccagaacctccgcaacaacctccagcaccccaacgagtacatccgcggggt 491 Query: 364 cacgctgcggttcctctgccgcctctccgagctggaggtgcttgagccgctcgtcccttc 423 ||||||||| ||||||||||||||| ||||| ||| |||| ||||||||| |||| || Sbjct: 492 cacgctgcgcttcctctgccgcctcaacgagcccgagctgctcgagccgctcatcccgtc 551 Query: 424 cat 426 ||| Sbjct: 552 cat 554
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 234 bits (118), Expect = 2e-58 Identities = 187/210 (89%) Strand = Plus / Minus Query: 98 gtccacttcgacaagggctccgccgccatggtgaacgagatcaaggcggatctggagggc 157 ||||||||||||||||||||| || |||||| |||||||||||||| || || |||||| Sbjct: 3662427 gtccacttcgacaagggctccccctccatggccaacgagatcaaggccgacctcgagggc 3662368 Query: 158 agcgacgtcgccgccaaggtcgaggccatgaagcgcgccgtcatgctcctcctcaatggc 217 ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||| Sbjct: 3662367 agcgacgtcgccgccaaggtcgacgccatgaagcgcgccatcatgctgctcctcaacggc 3662308 Query: 218 gagacactgcctacgctcttcatcaccatcgtccgctacgtcctcccttccgaggatcac 277 ||||| || || |||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct: 3662307 gagaccctcccccacctcttcatcaccgtcgtccgctacgtcctcccctccgaggaccac 3662248 Query: 278 accattcagaagctgctgctcctctacctc 307 ||||| |||||||| || |||||||||||| Sbjct: 3662247 accatccagaagctcctcctcctctacctc 3662218 Score = 149 bits (75), Expect = 9e-33 Identities = 111/123 (90%) Strand = Plus / Minus Query: 304 cctcatctgccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgt 363 |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || Sbjct: 3662164 cctcatctgccagaacctccgcaacaacctccagcaccccaacgagtacatccgcggggt 3662105 Query: 364 cacgctgcggttcctctgccgcctctccgagctggaggtgcttgagccgctcgtcccttc 423 ||||||||| ||||||||||||||| ||||| ||| |||| ||||||||| |||| || Sbjct: 3662104 cacgctgcgcttcctctgccgcctcaacgagcccgagctgctcgagccgctcatcccgtc 3662045 Query: 424 cat 426 ||| Sbjct: 3662044 cat 3662042
>dbj|AB080596.1| Botryococcus braunii bCOP mRNA for coatomer subunit beta, complete cds Length = 3313 Score = 101 bits (51), Expect = 2e-18 Identities = 69/75 (92%) Strand = Plus / Plus Query: 311 tgccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgtcacgctg 370 ||||||||||| |||||||||||||||||||| |||||||||||||| || ||||||||| Sbjct: 499 tgccagaacctgcgcaacaacctgcagcacccgaacgagtacatccggggggtcacgctg 558 Query: 371 cggttcctctgccgc 385 || ||||| |||||| Sbjct: 559 cgcttcctgtgccgc 573
>ref|NM_119297.2| Arabidopsis thaliana clathrin binding AT4G31480 mRNA, complete cds Length = 3296 Score = 44.1 bits (22), Expect = 0.39 Identities = 61/74 (82%) Strand = Plus / Plus Query: 311 tgccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgtcacgctg 370 |||||||| ||||| || ||||| ||||| || || ||||||||||| || || || ||| Sbjct: 361 tgccagaatcttcgtaataaccttcagcatcctaatgagtacatccgtggagtgacactg 420 Query: 371 cggttcctctgccg 384 |||| |||||||| Sbjct: 421 aggtttctctgccg 434
>ref|XM_323756.1| Neurospora crassa OR74A hypothetical protein (NCU04404.1) partial mRNA Length = 2874 Score = 44.1 bits (22), Expect = 0.39 Identities = 40/46 (86%) Strand = Plus / Plus Query: 333 tgcagcaccccaacgagtacatccgcggcgtcacgctgcggttcct 378 |||| ||||| |||||||||||||| ||| ||||||||| ||||| Sbjct: 323 tgcaacacccgaacgagtacatccgaggcaacacgctgcgcttcct 368
>ref|XM_952388.1| Neurospora crassa OR74A hypothetical protein (NCU04404.1) partial mRNA Length = 2874 Score = 44.1 bits (22), Expect = 0.39 Identities = 40/46 (86%) Strand = Plus / Plus Query: 333 tgcagcaccccaacgagtacatccgcggcgtcacgctgcggttcct 378 |||| ||||| |||||||||||||| ||| ||||||||| ||||| Sbjct: 323 tgcaacacccgaacgagtacatccgaggcaacacgctgcgcttcct 368
>ref|XM_956946.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial mRNA Length = 2685 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 105 tcgacaagggctccgccgccat 126 |||||||||||||||||||||| Sbjct: 2162 tcgacaagggctccgccgccat 2183
>ref|XM_330944.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial mRNA Length = 2685 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 105 tcgacaagggctccgccgccat 126 |||||||||||||||||||||| Sbjct: 2162 tcgacaagggctccgccgccat 2183
>ref|XM_754415.1| Ustilago maydis 521 hypothetical protein (UM03361.1) partial mRNA Length = 2949 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 333 tgcagcaccccaacgagtacat 354 |||||||||||||||||||||| Sbjct: 332 tgcagcaccccaacgagtacat 353
>emb|X80052.1|NCFOX2 N.crassa fox-2 gene Length = 3401 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 105 tcgacaagggctccgccgccat 126 |||||||||||||||||||||| Sbjct: 2665 tcgacaagggctccgccgccat 2686
>emb|BX908809.1| Neurospora crassa DNA linkage group IV Cosmid contig 29E8 Length = 197698 Score = 44.1 bits (22), Expect = 0.39 Identities = 40/46 (86%) Strand = Plus / Plus Query: 333 tgcagcaccccaacgagtacatccgcggcgtcacgctgcggttcct 378 |||| ||||| |||||||||||||| ||| ||||||||| ||||| Sbjct: 18647 tgcaacacccgaacgagtacatccgaggcaacacgctgcgcttcct 18692
>emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BAC clone F3L17 (ESSA project) Length = 94319 Score = 44.1 bits (22), Expect = 0.39 Identities = 61/74 (82%) Strand = Plus / Plus Query: 311 tgccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgtcacgctg 370 |||||||| ||||| || ||||| ||||| || || ||||||||||| || || || ||| Sbjct: 42315 tgccagaatcttcgtaataaccttcagcatcctaatgagtacatccgtggagtgacactg 42374 Query: 371 cggttcctctgccg 384 |||| |||||||| Sbjct: 42375 aggtttctctgccg 42388
>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75 Length = 196242 Score = 44.1 bits (22), Expect = 0.39 Identities = 61/74 (82%) Strand = Plus / Plus Query: 311 tgccagaaccttcgcaacaacctgcagcaccccaacgagtacatccgcggcgtcacgctg 370 |||||||| ||||| || ||||| ||||| || || ||||||||||| || || || ||| Sbjct: 30380 tgccagaatcttcgtaataaccttcagcatcctaatgagtacatccgtggagtgacactg 30439 Query: 371 cggttcctctgccg 384 |||| |||||||| Sbjct: 30440 aggtttctctgccg 30453
>ref|XM_544073.2| PREDICTED: Canis familiaris similar to CG12002-PA, isoform A (LOC486944), mRNA Length = 3891 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 324 gcaacaacctgcagcacccca 344 ||||||||||||||||||||| Sbjct: 1685 gcaacaacctgcagcacccca 1705
>ref|XM_505605.1| Yarrowia lipolytica CLIB122, YALI0F19074g predicted mRNA Length = 2859 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 330 acctgcagcaccccaacgagtacat 354 ||||||||||||| ||||||||||| Sbjct: 314 acctgcagcaccctaacgagtacat 338
>gb|AE005990.1| Caulobacter crescentus CB15 section 316 of 359 of the complete genome Length = 10324 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 144 cggatctggagggcagcgacgtcgccgcc 172 |||||||| ||||| |||||||||||||| Sbjct: 542 cggatctgcagggcggcgacgtcgccgcc 514 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 ctggagggcagcgacgtcgccgcc 172 ||||||||| |||||||||||||| Sbjct: 508 ctggagggcggcgacgtcgccgcc 531
>ref|XM_693623.1| PREDICTED: Danio rerio similar to CG12002-PA, isoform A (LOC570177), mRNA Length = 2301 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 324 gcaacaacctgcagcacccca 344 ||||||||||||||||||||| Sbjct: 146 gcaacaacctgcagcacccca 166
>ref|XM_571941.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7 Length = 2933 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 332 ctgcagcaccccaacgagtacatccgcgg 360 ||||| || |||||||||||||||||||| Sbjct: 322 ctgcaacatcccaacgagtacatccgcgg 350
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 165 tcgccgccaaggtcgaggcca 185 ||||||||||||||||||||| Sbjct: 4038174 tcgccgccaaggtcgaggcca 4038194
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 330 acctgcagcaccccaacgagtacat 354 ||||||||||||| ||||||||||| Sbjct: 2553906 acctgcagcaccctaacgagtacat 2553882
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence Length = 1347793 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 cccaacgagtacatccgcgg 360 |||||||||||||||||||| Sbjct: 773058 cccaacgagtacatccgcgg 773039
>gb|AY372423.1| Medicago truncatula B gene, partial sequence Length = 6574 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 327 acaacctgcagcaccccaacgagt 350 |||| ||||||||||||||||||| Sbjct: 935 acaaactgcagcaccccaacgagt 912
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 gccgccaaggtcgaggccat 186 |||||||||||||||||||| Sbjct: 2893165 gccgccaaggtcgaggccat 2893146
>emb|CR936945.2| Medicago truncatula chromosome 5 clone mte1-67e6, COMPLETE SEQUENCE Length = 127675 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 acaacctgcagcaccccaacgagt 350 |||| ||||||||||||||||||| Sbjct: 42307 acaaactgcagcaccccaacgagt 42330
>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29 Length = 303550 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 115 ctccgccgccatggtgaacgagatcaag 142 ||||||| |||||| ||||||||||||| Sbjct: 267914 ctccgccaccatggagaacgagatcaag 267941
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 ccaaggtcgaggccatgaag 190 |||||||||||||||||||| Sbjct: 1720007 ccaaggtcgaggccatgaag 1720026 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 ccaaggtcgaggccatgaag 190 |||||||||||||||||||| Sbjct: 728522 ccaaggtcgaggccatgaag 728541
>gb|AE005768.1| Caulobacter crescentus CB15 section 94 of 359 of the complete genome Length = 11751 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 ccaaccaccatcaacccacccgcc 67 ||||||| |||||||||||||||| Sbjct: 9838 ccaaccagcatcaacccacccgcc 9861
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 gatcaaggcggatctggagg 155 |||||||||||||||||||| Sbjct: 1763887 gatcaaggcggatctggagg 1763868
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 gccatggtgaacgagatcaaggcg 145 |||||| ||||||||||||||||| Sbjct: 2448595 gccatgatgaacgagatcaaggcg 2448618
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 cgtcgccgccaaggtcgagg 182 |||||||||||||||||||| Sbjct: 4994308 cgtcgccgccaaggtcgagg 4994327
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 205 cctcctcaatggcgagacactgcc 228 |||||||||||||||||| ||||| Sbjct: 7448022 cctcctcaatggcgagactctgcc 7448045
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 ccaaggtcgaggccatgaag 190 |||||||||||||||||||| Sbjct: 759001 ccaaggtcgaggccatgaag 759020
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 gcgacgtcgccgccaaggtc 178 |||||||||||||||||||| Sbjct: 1266036 gcgacgtcgccgccaaggtc 1266017
>gb|AC157784.2| Mus musculus chromosome 18, clone RP24-163C18, complete sequence Length = 182283 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 ccagatccactctgcccagg 37 |||||||||||||||||||| Sbjct: 122525 ccagatccactctgcccagg 122506 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,176,305 Number of Sequences: 3902068 Number of extensions: 3176305 Number of successful extensions: 69977 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69160 Number of HSP's gapped (non-prelim): 805 length of query: 448 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 426 effective length of database: 17,147,199,772 effective search space: 7304707102872 effective search space used: 7304707102872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)