ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl01f04 |
|---|---|
| Clone Library Name | barley_pub |
>OXRP_RAT (Q63617) 150 kDa oxygen-regulated protein precursor (Orp150)| (Hypoxia up-regulated 1) Length = 999 Score = 50.4 bits (119), Expect = 2e-06 Identities = 27/72 (37%), Positives = 41/72 (56%) Frame = +3 Query: 219 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKSPALAALADGNRLAGEEAAGITARHPA 398 +DLGSE +KVA V PG P+ + +N+ S+RK+P L + R G+ AAG+ ++P Sbjct: 38 VDLGSESMKVAIVK--PG-VPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKNPK 94 Query: 399 KVFSRMRDLLAK 434 + LL K Sbjct: 95 ATLRYFQHLLGK 106
>OXRP_CRIGR (Q60432) 150 kDa oxygen-regulated protein precursor (Orp150)| (Hypoxia up-regulated 1) (170 kDa glucose-regulated protein) Length = 999 Score = 50.4 bits (119), Expect = 2e-06 Identities = 27/72 (37%), Positives = 41/72 (56%) Frame = +3 Query: 219 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKSPALAALADGNRLAGEEAAGITARHPA 398 +DLGSE +KVA V PG P+ + +N+ S+RK+P L + R G+ AAG+ ++P Sbjct: 38 VDLGSESMKVAIVK--PG-VPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKNPK 94 Query: 399 KVFSRMRDLLAK 434 + LL K Sbjct: 95 ATLRYFQHLLGK 106
>OXRP_HUMAN (Q9Y4L1) 150 kDa oxygen-regulated protein precursor (Orp150)| (Hypoxia up-regulated 1) Length = 999 Score = 48.9 bits (115), Expect = 6e-06 Identities = 26/72 (36%), Positives = 41/72 (56%) Frame = +3 Query: 219 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKSPALAALADGNRLAGEEAAGITARHPA 398 +DLGSE +KVA V PG P+ + +N+ S+RK+P + L + R G+ AA + ++P Sbjct: 38 VDLGSESMKVAIV--KPG-VPMEIVLNKESRRKTPVIVTLKENERFFGDSAASMAIKNPK 94 Query: 399 KVFSRMRDLLAK 434 + LL K Sbjct: 95 ATLRYFQHLLGK 106
>YAM6_SCHPO (Q10061) Heat shock protein 70 homolog precursor| Length = 848 Score = 41.2 bits (95), Expect = 0.001 Identities = 21/70 (30%), Positives = 37/70 (52%) Frame = +3 Query: 219 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKSPALAALADGNRLAGEEAAGITARHPA 398 ID G+EW K A + PG P+ + + + ++RK + A R+ G +A+ + R PA Sbjct: 27 IDYGTEWTKAALI--KPG-IPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPA 83 Query: 399 KVFSRMRDLL 428 +++LL Sbjct: 84 HSIRNVKELL 93
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 35.4 bits (80), Expect = 0.074 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 7/34 (20%) Frame = +2 Query: 23 PPRRDRSPVLPPR-------PHSRAPDPRTLTPP 103 PPRR RSP PPR P R+P PR +PP Sbjct: 585 PPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPP 618
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 35.0 bits (79), Expect = 0.097 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 7/36 (19%) Frame = +2 Query: 17 ARPPRRDRSPVLPPR-------PHSRAPDPRTLTPP 103 A PPRR R+P PPR P R+P PR +PP Sbjct: 564 APPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPP 599
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 35.0 bits (79), Expect = 0.097 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 6/33 (18%) Frame = +2 Query: 23 PPRRDRSPVLP------PRPHSRAPDPRTLTPP 103 PPRR RSP LP P P R+P PR +PP Sbjct: 560 PPRRRRSPSLPRRRSPSPPPRRRSPSPRRYSPP 592
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 35.0 bits (79), Expect = 0.097 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 7/36 (19%) Frame = +2 Query: 17 ARPPRRDRSPVLPPR-------PHSRAPDPRTLTPP 103 A PPRR R+P PPR P R+P PR +PP Sbjct: 578 APPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPP 613
>GRP78_PLAFO (Q05866) 78 kDa glucose-regulated protein homolog precursor (GRP| 78) Length = 655 Score = 32.3 bits (72), Expect = 0.63 Identities = 22/82 (26%), Positives = 36/82 (43%) Frame = +3 Query: 219 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKSPALAALADGNRLAGEEAAGITARHPA 398 IDLG+ + V GR + + NE+ R +P+ + DG R GE A HP Sbjct: 33 IDLGTTYSCVGV--FKNGR--VEILNNELGNRITPSYVSFVDGERKVGEAAKLEATVHPT 88 Query: 399 KVFSRMRDLLAKPFPYARALAD 464 + ++ L+ + F + D Sbjct: 89 QTVFDVKRLIGRKFDDQEVVKD 110
>HORN_HUMAN (Q86YZ3) Hornerin| Length = 2850 Score = 32.0 bits (71), Expect = 0.82 Identities = 17/53 (32%), Positives = 25/53 (47%) Frame = -3 Query: 410 GEDLGRVARGDAGRLLAGEAVAVGQRGERGGLALGHLVDGDGDRGAARREVHG 252 G G+ +RG+ R +G + + GQ G +LGH G G R + HG Sbjct: 261 GSRSGQSSRGERHRSSSGSSSSYGQHGSGSRQSLGHGRQGSGSRQSPSHVRHG 313
>ROBO1_RAT (O55005) Roundabout homolog 1 precursor| Length = 1651 Score = 31.2 bits (69), Expect = 1.4 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +2 Query: 14 LARPPRRDRSPVLPPRPHSRAPDPRTLTPPH 106 + PP R R PV PP P PR ++PPH Sbjct: 1285 MPHPPDRRRQPVSPP------PPPRPISPPH 1309
>ROBO1_MOUSE (O89026) Roundabout homolog 1 precursor| Length = 1612 Score = 31.2 bits (69), Expect = 1.4 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +2 Query: 14 LARPPRRDRSPVLPPRPHSRAPDPRTLTPPH 106 + PP R R PV PP P PR ++PPH Sbjct: 1246 MPHPPDRRRQPVSPP------PPPRPISPPH 1270
>LATS1_HUMAN (O95835) Serine/threonine-protein kinase LATS1 (EC 2.7.11.1) (Large| tumor suppressor homolog 1) (WARTS protein kinase) (h-warts) Length = 1130 Score = 30.8 bits (68), Expect = 1.8 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +2 Query: 23 PPRRDRSPVLPPRPHSRAPDPRTLTPP 103 PP + RS PP P + P PR TPP Sbjct: 238 PPPQVRSVTPPPPPRGQTPPPRGTTPP 264
>HSP7F_SCHPO (O59838) Heat shock protein homolog pss1| Length = 720 Score = 30.8 bits (68), Expect = 1.8 Identities = 21/74 (28%), Positives = 36/74 (48%) Frame = +3 Query: 219 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKSPALAALADGNRLAGEEAAGITARHPA 398 ID G+ +A +A RA I V +NE+S R +P+L + + +R GE A A + Sbjct: 10 IDFGNSKTVIA---VARNRA-IDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEASNFR 65 Query: 399 KVFSRMRDLLAKPF 440 ++ L + + Sbjct: 66 NTVGSLKRLAGRTY 79
>XYLS_SULSO (Q9P999) Alpha-xylosidase (EC 3.2.1.-)| Length = 731 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = -3 Query: 161 EQETRRHAGERASGLVGWHAGGSGFGDLELASVDGAG 51 EQE GER GL G HAGG+G G +D +G Sbjct: 103 EQEFELSEGERVYGL-GQHAGGNGLGQSSAYKLDYSG 138
>LATS1_MOUSE (Q8BYR2) Serine/threonine-protein kinase LATS1 (EC 2.7.11.1) (Large| tumor suppressor homolog 1) (WARTS protein kinase) Length = 1129 Score = 30.8 bits (68), Expect = 1.8 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +2 Query: 23 PPRRDRSPVLPPRPHSRAPDPRTLTPP 103 PP + RS PP P + P PR TPP Sbjct: 238 PPPQVRSVTPPPPPRGQTPPPRGTTPP 264
>Y4BJ_RHISN (P55377) Hypothetical 67.9 kDa protein y4bJ| Length = 630 Score = 30.4 bits (67), Expect = 2.4 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = -3 Query: 98 GSGFGDLELASVDGAGARENDLDGEG 21 G+G+ +E A++DG G R D+DG+G Sbjct: 226 GNGWTSIEGATLDGGGYRLQDIDGDG 251
>PYRE_SYNEL (Q8DHW5) Orotate phosphoribosyltransferase (EC 2.4.2.10) (OPRT)| (OPRTase) Length = 189 Score = 30.0 bits (66), Expect = 3.1 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = +3 Query: 276 APIAVAINEMSKRKSPALAALADGNRLAGEEAAGITARHPAKVFSRMRDLLAKPFP 443 AP AVA+ ++ P + A++ + LAG++ A + R AK M + P P Sbjct: 62 APEAVAVAGLTLGADPLVVAVSVLSNLAGQDRAALIVRKEAKGHGTMSFIEGPPLP 117
>MUCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 831 Score = 30.0 bits (66), Expect = 3.1 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +2 Query: 26 PRRDRSPVLPPRPHSRAPDPRTLTPPHAIPLA 121 P+ + P+ PP P S +P P + TPP P A Sbjct: 710 PKLAQPPLRPPSPMSSSPTPPSSTPPSPQPKA 741
>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor| (Hydroxyproline-rich glycoprotein 1) Length = 555 Score = 26.6 bits (57), Expect(2) = 5.3 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +2 Query: 20 RPPRRDRSPVLPPRPHSRAPDPRTLTPP 103 RPP +P +PP P S P P TPP Sbjct: 277 RPPFPANTP-MPPSPPSPPPSPAPPTPP 303 Score = 21.2 bits (43), Expect(2) = 5.3 Identities = 9/19 (47%), Positives = 10/19 (52%) Frame = +1 Query: 82 SPNPDPPACHPTSPLARSP 138 SP P PP+ P SP P Sbjct: 317 SPAPVPPSPAPPSPAPSPP 335
>LAMBV_CHICK (Q01636) Laminin beta-1 chain variant (Laminin beta-1-2 chain)| (Fragment) Length = 198 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/33 (45%), Positives = 16/33 (48%) Frame = +2 Query: 17 ARPPRRDRSPVLPPRPHSRAPDPRTLTPPHAIP 115 A PP R P P R PDP + PPHA P Sbjct: 17 ATPPTHAR-----PDPTRRHPDPESRAPPHARP 44
>TOP2_TRYBB (P12531) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1221 Score = 28.9 bits (63), Expect = 6.9 Identities = 18/42 (42%), Positives = 19/42 (45%) Frame = -3 Query: 383 GDAGRLLAGEAVAVGQRGERGGLALGHLVDGDGDRGAARREV 258 GD G AG A AVG RGE+ G G G RR V Sbjct: 1172 GDGGATAAGAAAAVGGRGEK---------KGPGRAGGVRRMV 1204
>NAGB_STAAW (P65513) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 252 Score = 28.9 bits (63), Expect = 6.9 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 363 EEAAGITARHPAKVFSRMRDLLAKPFPY 446 +E G+TA HP M D+L K +PY Sbjct: 67 DEYVGLTASHPQSYHYYMDDMLFKQYPY 94
>NAGB_STAAS (Q6GBR8) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 252 Score = 28.9 bits (63), Expect = 6.9 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 363 EEAAGITARHPAKVFSRMRDLLAKPFPY 446 +E G+TA HP M D+L K +PY Sbjct: 67 DEYVGLTASHPQSYHYYMDDMLFKQYPY 94
>NAGB_STAAR (Q6GJA0) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 252 Score = 28.9 bits (63), Expect = 6.9 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 363 EEAAGITARHPAKVFSRMRDLLAKPFPY 446 +E G+TA HP M D+L K +PY Sbjct: 67 DEYVGLTASHPQSYHYYMDDMLFKQYPY 94
>NAGB_STAAN (P99125) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 252 Score = 28.9 bits (63), Expect = 6.9 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 363 EEAAGITARHPAKVFSRMRDLLAKPFPY 446 +E G+TA HP M D+L K +PY Sbjct: 67 DEYVGLTASHPQSYHYYMDDMLFKQYPY 94
>NAGB_STAAM (P65512) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 252 Score = 28.9 bits (63), Expect = 6.9 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 363 EEAAGITARHPAKVFSRMRDLLAKPFPY 446 +E G+TA HP M D+L K +PY Sbjct: 67 DEYVGLTASHPQSYHYYMDDMLFKQYPY 94
>NAGB_STAAC (Q5HIA6) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 252 Score = 28.9 bits (63), Expect = 6.9 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 363 EEAAGITARHPAKVFSRMRDLLAKPFPY 446 +E G+TA HP M D+L K +PY Sbjct: 67 DEYVGLTASHPQSYHYYMDDMLFKQYPY 94
>HNRPU_HUMAN (Q00839) Heterogenous nuclear ribonucleoprotein U (hnRNP U)| (Scaffold attachment factor A) (SAF-A) (p120) (pp120) Length = 824 Score = 28.9 bits (63), Expect = 6.9 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = -3 Query: 410 GEDLGRVARGDAGRLLAGEAVAVGQRGERGGLALGHLVDGDGDRGAARREVHG 252 GE+ G D+G + EA + + G+ G G GD + GA HG Sbjct: 107 GEENGAAGAADSGPMEEEEAASEDENGDDQGFQEGEDELGDEEEGAGDENGHG 159
>BL1S3_HUMAN (Q6QNY0) Biogenesis of lysosome-related organelles complex-1| subunit 3 (BLOC subunit 3) Length = 202 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/41 (36%), Positives = 26/41 (63%) Frame = +3 Query: 282 IAVAINEMSKRKSPALAALADGNRLAGEEAAGITARHPAKV 404 +A A++ + +R +AALA +RLA +AAG+ A H ++ Sbjct: 124 VAAAVSGVYRRAGRDVAALA--SRLAAAQAAGLAAAHSVRL 162
>RECX_XANCI (P0A0W7) Regulatory protein recX| Length = 162 Score = 28.5 bits (62), Expect = 9.1 Identities = 29/101 (28%), Positives = 41/101 (40%) Frame = -3 Query: 314 ALGHLVDGDGDRGAARREVHGRDLEPLGAQVDXXXXXXXXXXXXXXRDEGEEQETRRHAG 135 ALG LV + R R++ R +EP AQ DEG + +TR A Sbjct: 23 ALGLLVRREHSRKELNRKLLARGIEPDAAQ----------AAVDRLTDEGWQDDTRFAAA 72 Query: 134 ERASGLVGWHAGGSGFGDLELASVDGAGARENDLDGEGVRA 12 V + GSG+G L + + G + LD E + A Sbjct: 73 ------VVRNRAGSGYGPLHIRAELGT----HGLDSEAISA 103
>RECX_XANAC (P0A0W6) Regulatory protein recX| Length = 162 Score = 28.5 bits (62), Expect = 9.1 Identities = 29/101 (28%), Positives = 41/101 (40%) Frame = -3 Query: 314 ALGHLVDGDGDRGAARREVHGRDLEPLGAQVDXXXXXXXXXXXXXXRDEGEEQETRRHAG 135 ALG LV + R R++ R +EP AQ DEG + +TR A Sbjct: 23 ALGLLVRREHSRKELNRKLLARGIEPDAAQ----------AAVDRLTDEGWQDDTRFAAA 72 Query: 134 ERASGLVGWHAGGSGFGDLELASVDGAGARENDLDGEGVRA 12 V + GSG+G L + + G + LD E + A Sbjct: 73 ------VVRNRAGSGYGPLHIRAELGT----HGLDSEAISA 103
>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22| Length = 831 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 1/24 (4%) Frame = +2 Query: 32 RDRSPVL-PPRPHSRAPDPRTLTP 100 R RSP L PPRP SR+ R+LTP Sbjct: 12 RPRSPSLSPPRPDSRSSRGRSLTP 35
>ATPL_AQUAE (O66564) ATP synthase C chain (EC 3.6.3.14) (Lipid-binding protein)| Length = 100 Score = 28.5 bits (62), Expect = 9.1 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Frame = -3 Query: 401 LGRVARGDA----GRLLAGEAVAVGQRGERGGLALGHLVDGDGDRGAARREVHGRDLEPL 234 + A G+A G L G +A+G G G+ +GH V G G AR G L+ L Sbjct: 16 IAMAAEGEASVAKGLLYLGAGLAIGLAGLGAGVGMGHAVRGT-QEGVARNPNAGGRLQTL 74 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.308 0.130 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,970,985 Number of Sequences: 219361 Number of extensions: 707994 Number of successful extensions: 4190 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 3497 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4142 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits)
