>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 14   SRPRQTRSRKSPARTHTKNQITPL*TPPRKTNRLPPVACVNPP 142
            S P  T +   P  T +    TP+ TPP  T  LPP    +PP
Sbjct: 1485 SPPTTTTTTPPPTTTPSPPMTTPI-TPPASTTTLPPTTTPSPP 1526



 Score = 30.8 bits (68), Expect = 1.4
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 14   SRPRQTRSRKSPARTHTKNQITPL*TPPRKTNRLPPVACVNPP 142
            S P  T +   P  T +    TP+ TPP  T  LPP    +PP
Sbjct: 1603 SPPTTTTTTPPPTTTPSPPTTTPI-TPPTSTTTLPPTTTPSPP 1644



 Score = 30.8 bits (68), Expect = 1.4
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 14   SRPRQTRSRKSPARTHTKNQITPL*TPPRKTNRLPPVACVNPP 142
            S P  T +   P  T +    TP+ TPP  T  LPP    +PP
Sbjct: 1524 SPPTTTTTTPPPTTTPSPPTTTPI-TPPTSTTTLPPTTTPSPP 1565

>MAST3_HUMAN (O60307) Microtubule-associated serine/threonine-protein kinase 3 (EC|
            2.7.11.1)
          Length = 1309

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +3

Query: 15   AAHDKPA----LENLLPEPTPKT-KSRHFKLLPVKPIACPPSRALIRRIPTP 155
            A H +P+    L   L  P PKT + +    +P  P+ACPP  A   R P+P
Sbjct: 1153 AGHTRPSSLHGLAAKLGPPRPKTGRRKSTSSIPPSPLACPPISAPPPRSPSP 1204

>LHX3_HUMAN (Q9UBR4) LIM/homeobox protein Lhx3|
          Length = 397

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 87  KLLPVKPIACPPSRALIRRIPTPRACVRSFISPDTGKG 200
           +L P  P   PPS A  + +P P+  + S + PDT  G
Sbjct: 308 ELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLG 345

>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-1-related protein)
          Length = 1559

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 20  PRQTRSRKSPARTHTKNQITPL*TPPRKTNRLPPVACVN-PPDPNPA 157
           P QT+S  +PA  HT  Q TP   PPR  +  PP+  +  PP  N A
Sbjct: 784 PNQTQSTVAPA-AHTLIQQTPTLHPPRLPSPHPPLQPMTAPPSQNSA 829

>3BP2_MOUSE (Q06649) SH3 domain-binding protein 2 (3BP-2)|
          Length = 559

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +3

Query: 24  DKPALENLLPEPTPKTKSRHFKLLPVKPIACPPSRALIRRIPTPRACVRSFISP 185
           +KP    +  EP+P+  +   K  PV P+A  P    ++++P P A VR  + P
Sbjct: 354 NKPKFLKIAEEPSPREAA---KFAPVPPVAPRPP---VQKMPMPEATVRPAVLP 401

>PROA_BARQU (Q6G0S6) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)|
           (Glutamate-5-semialdehyde dehydrogenase)
           (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA
           dehydrogenase)
          Length = 412

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 211 LACLPFPVSGLMNERTHARGVGIRRINARDGGQAIGFTGR 92
           +ACLP PV  +M+E T   G+ IRR+    G   I +  R
Sbjct: 82  VACLPDPVGQVMSEWTRPNGLHIRRVRTPLGVIGIIYESR 121

>GRIN1_MOUSE (Q3UNH4) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)|
          Length = 932

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
 Frame = +3

Query: 15  AAHDKPALENLLPEPTPKTKSRHFKLLPVKPIACPPSRALIRRIPTPRACVR---SFISP 185
           AA   P+ E   P P P+T+  +F   P      PP R         +ACV    S +SP
Sbjct: 687 AAQKSPSAEAAAPPPGPRTRD-NFTKAPSWDAGAPPPREDAGTQAGAQACVSVAVSPMSP 745

Query: 186 DTGKGRQARSRERRP 230
             G G  A S +  P
Sbjct: 746 QDGAGGPAFSFQAAP 760

>Y975_TREPA (O83940) Hypothetical UPF0011 protein TP0975|
          Length = 274

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 123 SRALIRRIPTPRACVRSFISPDTGKGRQARSRER-RPSD 236
           +R LI  + TP   + +F+SP+ G+GRQ+  R R RP +
Sbjct: 64  ARRLIHFLSTP---ISAFLSPEKGRGRQSARRTRARPGE 99

>LAMBV_CHICK (Q01636) Laminin beta-1 chain variant (Laminin beta-1-2 chain)|
           (Fragment)
          Length = 198

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +2

Query: 29  TRSRKSPARTHTKNQITPL*TPPRKTNRLPPVACVNPPD--PNPACVRA 169
           T +R  P R H   +      PP    R PP    +PP   P PA VRA
Sbjct: 21  THARPDPTRRHPDPESR---APPHARPRSPPPPAPSPPPLPPRPAAVRA 66

>ANI3_CAEEL (Q9XWN6) Anillin-like protein 3|
          Length = 709

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 39  ENLLPEPTPKTKSRHFKLLPVKPIACPPSRALIRRIPTPRACVRSFIS 182
           +++ P P P   S+ ++ +P   +  PPS A  R+ P PR  +R  ++
Sbjct: 7   KSMPPTPVPIGSSQFYRWMPHPIVDTPPSDATWRK-PVPRGRIRDLVA 53

>LHX3_MOUSE (P50481) LIM/homeobox protein Lhx3 (Homeobox protein LIM-3)|
           (Homeobox protein P-LIM) (LIM homeobox protein 3)
          Length = 400

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 87  KLLPVKPIACPPSRALIRRIPTPRACVRSFISPDT 191
           +L P  P   PPS A  + +P P+  + S + PDT
Sbjct: 311 ELRPGSPYGIPPSPAAPQSLPGPQPLLSSLVYPDT 345

>ALX4_HUMAN (Q9H161) Homeobox protein aristaless-like 4|
          Length = 411

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 116 PPVACVNPPDPNPACVRAFVH*PRHG 193
           P  ACV P DP PAC+    H P  G
Sbjct: 317 PVPACVVPCDPVPACMSPHAHPPGSG 342

>ECR_BOMMO (P49881) Ecdysone receptor (Ecdysteroid receptor)|
           (20-hydroxy-ecdysone receptor) (20E receptor) (EcRH)
          Length = 606

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = +2

Query: 2   EESRSRPRQTRSRKSPARTHTKNQITPL*TPPRKTNRLPPVACVNPPDPNPACVRAFVH* 181
           E S+++ RQ + +        K  + P+ T   + + +PP+   +PP P  A +   V  
Sbjct: 280 EPSKNKDRQRQKKD-------KGILLPVSTTTVE-DHMPPIMQCDPPPPEAARIHEVV-- 329

Query: 182 PRHGKRKAGEVKREKTVRP 238
           PR+   K  E  R+K + P
Sbjct: 330 PRYLSEKLMEQNRQKNIPP 348

>IF2_DESPS (Q6AJY4) Translation initiation factor IF-2|
          Length = 939

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 31  PLSKISCPNPHQKPNHATLNSSP*NQSPAPRRVR*SAGSQPRVRA 165
           P+ +     P +KP    +N SP   +P+P R   SAG  P+  A
Sbjct: 242 PIQREEPSRPRRKPTRPPVNRSPRPSTPSPNR---SAGGPPKPAA 283

>ALX4_MOUSE (O35137) Homeobox protein aristaless-like 4 (ALX-4)|
          Length = 399

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 116 PPVACVNPPDPNPACVRAFVH*PRHG 193
           P  ACV P DP PAC+    H P  G
Sbjct: 305 PVPACVVPCDPVPACMSPHAHPPGSG 330

>TRAT1_MOUSE (Q3UU67) T-cell receptor-associated transmembrane adapter 1 (T-cell|
           receptor-interacting molecule) (TRIM)
          Length = 187

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +3

Query: 36  LENLLPEPTPKTKSRHFKLLPVKPIACPPSRALIRRIPT-PRACVRSFISPDTGKGRQAR 212
           LEN++PEP  +      K  P +  + P   A   ++P   + C  S      GK R+ R
Sbjct: 67  LENIIPEPLDENCYEQMKGRPQRSASDPQEVAAPAQVPAEAQMCYASLDHSVKGKRRRPR 126

Query: 213 SRERRPSD 236
            +    SD
Sbjct: 127 KQNTNVSD 134

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +3

Query: 3   RRVGAAHDKPALENLLPEPTPKTKSRHFKLLPVKPIACPPSRALIRRIPTPR 158
           RR  +    PA     P P P  + R    LP +    PP R   RR P+PR
Sbjct: 539 RRRRSPSPPPARRRRSPSPPPPPRRRRSPSLPRRRSPSPPPR---RRSPSPR 587

>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-2)
          Length = 1558

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +2

Query: 20  PRQTRSRKSPARTHTKNQITPL*TPPRKTNRLPPVACVNPPDPNPACVRAFVH*PRHGKR 199
           P QT+S  +PA  HT  Q  P   PPR  +  PP+  +  P P+ +  +       HG+ 
Sbjct: 785 PNQTQSTVAPA-AHTHIQQAPTLHPPRLPSPHPPLQPMTAP-PSQSSAQPHPQPSLHGQG 842

Query: 200 KAG 208
             G
Sbjct: 843 PPG 845

>SEM1A_TRICF (Q26972) Semaphorin-1A precursor (Semaphorin-I)|
          Length = 712

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 30  PALENLLPEPTPKTKSRHFKLLPVKPIACPPSRALIRRIP 149
           P  +NL+PEP P    R  ++LP K +    + +L+  +P
Sbjct: 343 PVPQNLVPEPRPGQCVRDSRILPDKNVNFIKTHSLMEDVP 382

>SUUR_DROER (P59597) Protein suppressor of underreplication|
          Length = 962

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 60  TPKTKSRHFKLLPVKPIACPPSRALIRRIPTPRACVRSFISPDTGKGRQARSRERRPSD 236
           TPKT+  + +LL V   A           PTP     + I+P T    + ++R ++P D
Sbjct: 418 TPKTRRLNVRLLRVSLDALST--------PTPSGATTAIITPKTEPSARRKNRTKQPMD 468

>GRIN1_HUMAN (Q7Z2K8) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)|
          Length = 1008

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
 Frame = +3

Query: 18  AHDKPALENLLPEPTPKTKSRHFKLLPVKPIACPPSRALIRRIPTPRACVR---SFISPD 188
           A   P  E   P P P+T+    K    +  A PP R         +ACV    S +SP 
Sbjct: 773 AERSPCPEAAAPPPGPRTRDNFTKAPSWEASAPPPPREDAGTQAGAQACVSVAVSPMSPQ 832

Query: 189 TGKGRQARSRERRP 230
            G G  A S +  P
Sbjct: 833 DGAGGSAFSFQAAP 846


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,326,422
Number of Sequences: 219361
Number of extensions: 1102564
Number of successful extensions: 4100
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4083
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)