ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl01e11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468073.1| Oryza sativa (japonica cultivar-group), mRNA 62 2e-06
2ref|XM_468072.1| Oryza sativa (japonica cultivar-group), mRNA 62 2e-06
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
4dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
5dbj|AK100528.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
6dbj|AK067308.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
7dbj|AK060140.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
8gb|AC108947.5| Mus musculus BAC clone RP23-140A11 from chromosom... 44 0.37
9gb|AC125268.10| Mus musculus chromosome 1, clone RP23-127L7, com... 44 0.37
10gb|AC091331.14| Mus musculus chromosome 1, clone RP23-293F4, com... 42 1.5
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.5
12gb|AC145725.2| Gasterosteus aculeatus clone CH213-173B10, comple... 42 1.5
13gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosom... 42 1.5
14tpg|BK005006.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 42 1.5
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
16emb|BX649514.8| Zebrafish DNA sequence from clone CH211-232P6 in... 42 1.5
17emb|BX649444.12| Zebrafish DNA sequence from clone DKEYP-27E10 i... 42 1.5
18gb|AF402962.1| Oryza sativa chromosome 4 clone Y5, genomic sequence 40 5.7
19gb|AY166659.1| Oryza sativa (indica cultivar-group) pollen aller... 40 5.7
20gb|AC170187.2| Mus musculus BAC clone RP23-320B10 from chromosom... 40 5.7
21gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 40 5.7
22gb|AC027660.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
23gb|AY658557.1| Synthetic construct Peudomonas aeruginosa clone F... 40 5.7
24gb|AC115039.7| Mus musculus chromosome 6, clone RP24-279C2, comp... 40 5.7
25gb|AC105470.17| Rattus norvegicus 10 BAC CH230-192N7 (Children's... 40 5.7
26gb|AC136136.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.7
27gb|AC122216.4| Mus musculus BAC clone RP23-118H9 from 5, complet... 40 5.7
28emb|CR652339.2|CNS0F2BD Tetraodon nigroviridis full-length cDNA 40 5.7
29emb|CR637811.2|CNS0ER3T Tetraodon nigroviridis full-length cDNA 40 5.7
30emb|Z95114.19|HS212A2 Human DNA sequence from clone CTA-212A2 on... 40 5.7
31gb|AY143652.1| Echinocardium cordatum clone EN9 microsatellite s... 40 5.7
32emb|AJ431703.1|HVU431703 Hordeum vulgare vip gene for viviparous... 40 5.7
33gb|AC171134.2| Helobdella robusta clone CH306-1A5, complete sequ... 40 5.7
34emb|CR388063.9| Zebrafish DNA sequence from clone CH211-248P16 i... 40 5.7
35emb|CR774194.4| Zebrafish DNA sequence from clone DKEYP-11A2 in ... 40 5.7
36emb|CR749769.6| Zebrafish DNA sequence from clone DKEY-215J3 in ... 40 5.7
37emb|CR381695.4| Zebrafish DNA sequence from clone CH211-265I20 i... 40 5.7
38emb|BX120006.15| Zebrafish DNA sequence from clone DKEYP-21H4 in... 40 5.7
39gb|AC146469.23| Pan troglodytes clone rp43-45g24, complete sequence 40 5.7
40emb|BX530719.4| Zebrafish DNA sequence from clone DKEYP-51D11 in... 40 5.7
41gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 geno... 40 5.7
42gb|DQ373969.1| Parnassius mnemosyne clone PMN002 microsatellite ... 40 5.7
43emb|BX465203.6| Zebrafish DNA sequence from clone CH211-221F10 i... 40 5.7
44dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
45dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
46gb|AE004747.1| Pseudomonas aeruginosa PAO1, section 308 of 529 o... 40 5.7
47dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
48emb|AL929404.19| Mouse DNA sequence from clone RP23-71H9 on chro... 40 5.7
49emb|AL928805.18| Mouse DNA sequence from clone RP23-291H20 on ch... 40 5.7
50emb|AL929341.4| Zebrafish DNA sequence from clone CH211-85N16, c... 40 5.7
51emb|BX957279.13| Zebrafish DNA sequence from clone DKEY-218N20 i... 40 5.7
52emb|BX470193.5| Zebrafish DNA sequence from clone CH211-223O11 i... 40 5.7
53emb|AJ809402.1| Arctia caja microsatellite DNA, clone Acaja59-(G... 40 5.7
54gb|AC144949.5| Mus musculus BAC clone RP23-136C19 from chromosom... 40 5.7
55gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
56emb|BX004840.8| Zebrafish DNA sequence from clone DKEY-19A16 in ... 40 5.7
57gb|AC133955.4| Mus musculus BAC clone RP23-249M4 from 6, complet... 40 5.7
58gb|AC153958.2| Mus musculus 10 BAC RP24-541B4 (Roswell Park Canc... 40 5.7 
>ref|XM_468073.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1281

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 375 gatgggtctgaaggggtcaagttcaacacatcgcacctgatgcanacaac 424
           ||||| ||||||||| |||| ||||||||||| ||||||||||| |||||
Sbjct: 240 gatggatctgaagggctcaaattcaacacatcacacctgatgcaaacaac 289
to top
>ref|XM_468072.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2499

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 375 gatgggtctgaaggggtcaagttcaacacatcgcacctgatgcanacaac 424
           ||||| ||||||||| |||| ||||||||||| ||||||||||| |||||
Sbjct: 16  gatggatctgaagggctcaaattcaacacatcacacctgatgcaaacaac 65
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                  
Query: 375      gatgggtctgaaggggtcaagttcaacacatcgcacctgatgcanacaac 424
                ||||| ||||||||| |||| ||||||||||| ||||||||||| |||||
Sbjct: 32887648 gatggatctgaagggctcaaattcaacacatcacacctgatgcaaacaac 32887599
to top
>dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1534_E09
          Length = 126209

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                               
Query: 375   gatgggtctgaaggggtcaagttcaacacatcgcacctgatgcanacaac 424
             ||||| ||||||||| |||| ||||||||||| ||||||||||| |||||
Sbjct: 42389 gatggatctgaagggctcaaattcaacacatcacacctgatgcaaacaac 42340
to top
>dbj|AK100528.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101F24, full
            insert sequence
          Length = 2387

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                              
Query: 375  gatgggtctgaaggggtcaagttcaacacatcgcacctgatgcanacaac 424
            ||||| ||||||||| |||| ||||||||||| ||||||||||| |||||
Sbjct: 1071 gatggatctgaagggctcaaattcaacacatcacacctgatgcaaacaac 1120
to top
>dbj|AK067308.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100G23, full
           insert sequence
          Length = 3493

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 375 gatgggtctgaaggggtcaagttcaacacatcgcacctgatgcanacaac 424
           ||||| ||||||||| |||| ||||||||||| ||||||||||| |||||
Sbjct: 390 gatggatctgaagggctcaaattcaacacatcacacctgatgcaaacaac 439
to top
>dbj|AK060140.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G04, full
           insert sequence
          Length = 1281

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 375 gatgggtctgaaggggtcaagttcaacacatcgcacctgatgcanacaac 424
           ||||| ||||||||| |||| ||||||||||| ||||||||||| |||||
Sbjct: 240 gatggatctgaagggctcaaattcaacacatcacacctgatgcaaacaac 289
to top
>gb|AC108947.5| Mus musculus BAC clone RP23-140A11 from chromosome 13, complete sequence
          Length = 187401

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 155    gcgtgcgtgcgtgcgttcgttc 176
              ||||||||||||||||||||||
Sbjct: 133927 gcgtgcgtgcgtgcgttcgttc 133906
to top
>gb|AC125268.10| Mus musculus chromosome 1, clone RP23-127L7, complete sequence
          Length = 233529

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 155   gcgtgcgtgcgtgcgttcgttc 176
             ||||||||||||||||||||||
Sbjct: 56766 gcgtgcgtgcgtgcgttcgttc 56745
to top
>gb|AC091331.14| Mus musculus chromosome 1, clone RP23-293F4, complete sequence
          Length = 236163

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 60    acaccaaaaaccaaatcacgc 80
             |||||||||||||||||||||
Sbjct: 51526 acaccaaaaaccaaatcacgc 51506
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 151      ccccgcgtgcgtgcgtgcgtt 171
                |||||||||||||||||||||
Sbjct: 31022594 ccccgcgtgcgtgcgtgcgtt 31022574



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 147     ccaaccccgcgtgcgtgcgtgcgt 170
               |||||| |||||||||||||||||
Sbjct: 7459356 ccaacctcgcgtgcgtgcgtgcgt 7459379
to top
>gb|AC145725.2| Gasterosteus aculeatus clone CH213-173B10, complete sequence
          Length = 158904

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 150    accccgcgtgcgtgcgtgcgt 170
              |||||||||||||||||||||
Sbjct: 151248 accccgcgtgcgtgcgtgcgt 151268
to top
>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01
             genomic sequence, complete sequence
          Length = 168759

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 151   ccccgcgtgcgtgcgtgcgtt 171
             |||||||||||||||||||||
Sbjct: 73470 ccccgcgtgcgtgcgtgcgtt 73490
to top
>tpg|BK005006.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY
           transcription factor 3 (WRKY3) gene, complete cds
          Length = 3406

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 151 ccccgcgtgcgtgcgtgcgtt 171
           |||||||||||||||||||||
Sbjct: 316 ccccgcgtgcgtgcgtgcgtt 336
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 151      ccccgcgtgcgtgcgtgcgtt 171
                |||||||||||||||||||||
Sbjct: 31113117 ccccgcgtgcgtgcgtgcgtt 31113097



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 147     ccaaccccgcgtgcgtgcgtgcgt 170
               |||||| |||||||||||||||||
Sbjct: 7457191 ccaacctcgcgtgcgtgcgtgcgt 7457214
to top
>emb|BX649514.8| Zebrafish DNA sequence from clone CH211-232P6 in linkage group 4,
              complete sequence
          Length = 152488

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 155    gcgtgcgtgcgtgcgttcgttcatt 179
              |||||||||||||||| ||||||||
Sbjct: 118534 gcgtgcgtgcgtgcgtgcgttcatt 118510
to top
>emb|BX649444.12| Zebrafish DNA sequence from clone DKEYP-27E10 in linkage group 4,
             complete sequence
          Length = 85097

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 155   gcgtgcgtgcgtgcgttcgttcatt 179
             |||||||||||||||| ||||||||
Sbjct: 31425 gcgtgcgtgcgtgcgtgcgttcatt 31401
to top
>gb|AF402962.1| Oryza sativa chromosome 4 clone Y5, genomic sequence
          Length = 23480

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 147  ccaaccccgcgtgcgtgcgtgcgt 170
            |||||| |||||||||||||||||
Sbjct: 3398 ccaacctcgcgtgcgtgcgtgcgt 3421
to top
>gb|AY166659.1| Oryza sativa (indica cultivar-group) pollen allergen (OSIPA) gene,
            partial cds
          Length = 2411

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 155  gcgtgcgtgcgtgcgttcgt 174
            ||||||||||||||||||||
Sbjct: 1720 gcgtgcgtgcgtgcgttcgt 1701
to top
>gb|AC170187.2| Mus musculus BAC clone RP23-320B10 from chromosome 19, complete sequence
          Length = 192550

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    gcgtgcgtgcgtgcgttcgt 174
              ||||||||||||||||||||
Sbjct: 130476 gcgtgcgtgcgtgcgttcgt 130457
to top
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   ccccgcgtgcgtgcgtgcgt 170
             ||||||||||||||||||||
Sbjct: 90049 ccccgcgtgcgtgcgtgcgt 90068
to top
>gb|AC027660.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone BAC
             nbxb0045B21, complete sequence
          Length = 152397

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   gcgtgcgtgcgtgcgttcgt 174
             ||||||||||||||||||||
Sbjct: 77486 gcgtgcgtgcgtgcgttcgt 77467
to top
>gb|AY658557.1| Synthetic construct Peudomonas aeruginosa clone FLH035256.01F
           PA3251 gene, partial cds
          Length = 810

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 10  tcggagccgcccacgacaaacccg 33
           |||| |||||||||||||||||||
Sbjct: 761 tcggcgccgcccacgacaaacccg 784
to top
>gb|AC115039.7| Mus musculus chromosome 6, clone RP24-279C2, complete sequence
          Length = 195362

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    gcgtgcgtgcgtgcgttcgt 174
              ||||||||||||||||||||
Sbjct: 163044 gcgtgcgtgcgtgcgttcgt 163063
to top
>gb|AC105470.17| Rattus norvegicus 10 BAC CH230-192N7 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 212491

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    gcgtgcgtgcgtgcgttcgt 174
              ||||||||||||||||||||
Sbjct: 123548 gcgtgcgtgcgtgcgttcgt 123567
to top
>gb|AC136136.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0071C04, from chromosome 3, complete sequence
          Length = 126078

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 147   ccaaccccgcgtgcgtgcgtgcgt 170
             |||||| |||||||||||||||||
Sbjct: 97911 ccaacctcgcgtgcgtgcgtgcgt 97934
to top
>gb|AC122216.4| Mus musculus BAC clone RP23-118H9 from 5, complete sequence
          Length = 196273

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   gcgtgcgtgcgtgcgttcgt 174
             ||||||||||||||||||||
Sbjct: 97849 gcgtgcgtgcgtgcgttcgt 97830
to top
>emb|CR652339.2|CNS0F2BD Tetraodon nigroviridis full-length cDNA
          Length = 1148

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 gcgtgcgtgcgtgcgttcgt 174
           ||||||||||||||||||||
Sbjct: 11  gcgtgcgtgcgtgcgttcgt 30
to top
>emb|CR637811.2|CNS0ER3T Tetraodon nigroviridis full-length cDNA
          Length = 1158

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 gcgtgcgtgcgtgcgttcgt 174
           ||||||||||||||||||||
Sbjct: 23  gcgtgcgtgcgtgcgttcgt 42
to top
>emb|Z95114.19|HS212A2 Human DNA sequence from clone CTA-212A2 on chromosome 22q12, complete
             sequence
          Length = 212753

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   ccccgcgtgcgtgcgtgcgt 170
             ||||||||||||||||||||
Sbjct: 13043 ccccgcgtgcgtgcgtgcgt 13062
to top
>gb|AY143652.1| Echinocardium cordatum clone EN9 microsatellite sequence
          Length = 120

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 155 gcgtgcgtgcgtgcgttcgt 174
           ||||||||||||||||||||
Sbjct: 101 gcgtgcgtgcgtgcgttcgt 82
to top
>emb|AJ431703.1|HVU431703 Hordeum vulgare vip gene for viviparous-1 protein, exons 1-6
          Length = 3554

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 151  ccccgcgtgcgtgcgtgcgttcgt 174
            |||||| |||||||||||||||||
Sbjct: 1666 ccccgcatgcgtgcgtgcgttcgt 1689
to top
>gb|AC171134.2| Helobdella robusta clone CH306-1A5, complete sequence
          Length = 95814

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   cgtgcgtgcgttcgttcatt 179
             ||||||||||||||||||||
Sbjct: 52934 cgtgcgtgcgttcgttcatt 52915
to top
>emb|CR388063.9| Zebrafish DNA sequence from clone CH211-248P16 in linkage group 18,
              complete sequence
          Length = 142119

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    gcgtgcgtgcgtgcgttcgt 174
              ||||||||||||||||||||
Sbjct: 129008 gcgtgcgtgcgtgcgttcgt 129027
to top
>emb|CR774194.4| Zebrafish DNA sequence from clone DKEYP-11A2 in linkage group 1,
             complete sequence
          Length = 160120

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   gcgtgcgtgcgtgcgttcgt 174
             ||||||||||||||||||||
Sbjct: 53045 gcgtgcgtgcgtgcgttcgt 53026
to top
>emb|CR749769.6| Zebrafish DNA sequence from clone DKEY-215J3 in linkage group 17,
             complete sequence
          Length = 170993

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   gcgtgcgtgcgtgcgttcgt 174
             ||||||||||||||||||||
Sbjct: 20625 gcgtgcgtgcgtgcgttcgt 20644
to top
>emb|CR381695.4| Zebrafish DNA sequence from clone CH211-265I20 in linkage group 14,
             complete sequence
          Length = 81999

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   gcgtgcgtgcgtgcgttcgt 174
             ||||||||||||||||||||
Sbjct: 12457 gcgtgcgtgcgtgcgttcgt 12476
to top
>emb|BX120006.15| Zebrafish DNA sequence from clone DKEYP-21H4 in linkage group 3, complete
              sequence
          Length = 196854

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    gcgtgcgtgcgtgcgttcgt 174
              ||||||||||||||||||||
Sbjct: 181780 gcgtgcgtgcgtgcgttcgt 181799
to top
>gb|AC146469.23| Pan troglodytes clone rp43-45g24, complete sequence
          Length = 191684

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 151    ccccgcgtgcgtgcgtgcgt 170
              ||||||||||||||||||||
Sbjct: 154628 ccccgcgtgcgtgcgtgcgt 154609
to top
>emb|BX530719.4| Zebrafish DNA sequence from clone DKEYP-51D11 in linkage group 14,
             complete sequence
          Length = 197865

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 155   gcgtgcgtgcgtgcgttcgttcat 178
             |||||||||||||||| |||||||
Sbjct: 85926 gcgtgcgtgcgtgcgtgcgttcat 85903
to top
>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete
              sequence
          Length = 158550

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    gcgtgcgtgcgtgcgttcgt 174
              ||||||||||||||||||||
Sbjct: 118662 gcgtgcgtgcgtgcgttcgt 118681
to top
>gb|DQ373969.1| Parnassius mnemosyne clone PMN002 microsatellite sequences
          Length = 263

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 gcgtgcgtgcgtgcgttcgt 174
           ||||||||||||||||||||
Sbjct: 117 gcgtgcgtgcgtgcgttcgt 136
to top
>emb|BX465203.6| Zebrafish DNA sequence from clone CH211-221F10 in linkage group 14,
              complete sequence
          Length = 150992

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    gcgtgcgtgcgtgcgttcgt 174
              ||||||||||||||||||||
Sbjct: 138492 gcgtgcgtgcgtgcgttcgt 138473
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 155      gcgtgcgtgcgtgcgttcgt 174
                ||||||||||||||||||||
Sbjct: 20945729 gcgtgcgtgcgtgcgttcgt 20945710



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 155      gcgtgcgtgcgtgcgttcgt 174
                ||||||||||||||||||||
Sbjct: 13908860 gcgtgcgtgcgtgcgttcgt 13908841
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 155      gcgtgcgtgcgtgcgttcgt 174
                ||||||||||||||||||||
Sbjct: 24448346 gcgtgcgtgcgtgcgttcgt 24448327
to top
>gb|AE004747.1| Pseudomonas aeruginosa PAO1, section 308 of 529 of the complete genome
          Length = 13818

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 10    tcggagccgcccacgacaaacccg 33
             |||| |||||||||||||||||||
Sbjct: 11086 tcggcgccgcccacgacaaacccg 11109
to top
>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0686E09
          Length = 156425

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   gcgtgcgtgcgtgcgttcgt 174
             ||||||||||||||||||||
Sbjct: 28730 gcgtgcgtgcgtgcgttcgt 28711
to top
>emb|AL929404.19| Mouse DNA sequence from clone RP23-71H9 on chromosome 2, complete
              sequence
          Length = 187610

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    gcgtgcgtgcgtgcgttcgt 174
              ||||||||||||||||||||
Sbjct: 162978 gcgtgcgtgcgtgcgttcgt 162997
to top
>emb|AL928805.18| Mouse DNA sequence from clone RP23-291H20 on chromosome 2, complete
            sequence
          Length = 192688

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 155  gcgtgcgtgcgtgcgttcgt 174
            ||||||||||||||||||||
Sbjct: 6939 gcgtgcgtgcgtgcgttcgt 6920
to top
>emb|AL929341.4| Zebrafish DNA sequence from clone CH211-85N16, complete sequence
          Length = 166228

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   gcgtgcgtgcgtgcgttcgt 174
             ||||||||||||||||||||
Sbjct: 84196 gcgtgcgtgcgtgcgttcgt 84177
to top
>emb|BX957279.13| Zebrafish DNA sequence from clone DKEY-218N20 in linkage group 19,
             complete sequence
          Length = 198752

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   gcgtgcgtgcgtgcgttcgt 174
             ||||||||||||||||||||
Sbjct: 75376 gcgtgcgtgcgtgcgttcgt 75395
to top
>emb|BX470193.5| Zebrafish DNA sequence from clone CH211-223O11 in linkage group 20,
             complete sequence
          Length = 97681

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   gcgtgcgtgcgtgcgttcgt 174
             ||||||||||||||||||||
Sbjct: 51269 gcgtgcgtgcgtgcgttcgt 51250
to top
>emb|AJ809402.1| Arctia caja microsatellite DNA, clone Acaja59-(GTAA01B06)
          Length = 392

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 155 gcgtgcgtgcgtgcgttcgt 174
           ||||||||||||||||||||
Sbjct: 188 gcgtgcgtgcgtgcgttcgt 169
to top
>gb|AC144949.5| Mus musculus BAC clone RP23-136C19 from chromosome 19, complete
             sequence
          Length = 203311

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   gcgtgcgtgcgtgcgttcgt 174
             ||||||||||||||||||||
Sbjct: 28771 gcgtgcgtgcgtgcgttcgt 28752
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 155      gcgtgcgtgcgtgcgttcgt 174
                ||||||||||||||||||||
Sbjct: 20956993 gcgtgcgtgcgtgcgttcgt 20956974



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 155      gcgtgcgtgcgtgcgttcgt 174
                ||||||||||||||||||||
Sbjct: 13916202 gcgtgcgtgcgtgcgttcgt 13916183
to top
>emb|BX004840.8| Zebrafish DNA sequence from clone DKEY-19A16 in linkage group 22,
              complete sequence
          Length = 155968

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    gcgtgcgtgcgtgcgttcgt 174
              ||||||||||||||||||||
Sbjct: 134195 gcgtgcgtgcgtgcgttcgt 134176
to top
>gb|AC133955.4| Mus musculus BAC clone RP23-249M4 from 6, complete sequence
          Length = 185272

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    gcgtgcgtgcgtgcgttcgt 174
              ||||||||||||||||||||
Sbjct: 162001 gcgtgcgtgcgtgcgttcgt 161982
to top
>gb|AC153958.2| Mus musculus 10 BAC RP24-541B4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 176618

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 155   gcgtgcgtgcgtgcgttcgttcat 178
             |||||||||||||||| |||||||
Sbjct: 88709 gcgtgcgtgcgtgcgtgcgttcat 88686


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,758,639
Number of Sequences: 3902068
Number of extensions: 2758639
Number of successful extensions: 78015
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77523
Number of HSP's gapped (non-prelim): 487
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top