ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl01e10 |
|---|---|
| Clone Library Name | barley_pub |
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 150 bits (380), Expect = 5e-37 Identities = 73/92 (79%), Positives = 80/92 (86%) Frame = +2 Query: 131 MLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSF 310 M + G DRLTG+NKEAWKEG+IRGTAVLVK DVL LGDFHASLLDGVH ILG +GV+F Sbjct: 1 MQVQGFFDRLTGRNKEAWKEGRIRGTAVLVKKDVLGLGDFHASLLDGVHNILGHKEGVAF 60 Query: 311 RLVSATAPDPQNGSRGKVGKPAHLEEMVVTMK 406 RLVSATA DP NG RGK+GKPAHLEE+VVTMK Sbjct: 61 RLVSATARDPSNGGRGKLGKPAHLEELVVTMK 92
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 87.8 bits (216), Expect = 6e-18 Identities = 46/91 (50%), Positives = 65/91 (71%) Frame = +2 Query: 131 MLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSF 310 MLL GL+D LTG NK A +++GT VL++ +VLDL DF A+++DG+ + LGK GV+ Sbjct: 1 MLLGGLIDTLTGANKSA----RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGK--GVTC 54 Query: 311 RLVSATAPDPQNGSRGKVGKPAHLEEMVVTM 403 +L+S+TA D NG RGKVG A LE+ V ++ Sbjct: 55 QLISSTAVDQDNGGRGKVGAEAELEQWVTSL 85
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 81.6 bits (200), Expect = 4e-16 Identities = 40/89 (44%), Positives = 66/89 (74%) Frame = +2 Query: 134 LLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFR 313 +L G++D +TG +K++ +++GT VL++ +VLDL DF A+++DG+ + LGK GV+ + Sbjct: 1 MLGGIIDTITGSSKQS----RLKGTVVLMRKNVLDLNDFGATVIDGLGEFLGK--GVTCQ 54 Query: 314 LVSATAPDPQNGSRGKVGKPAHLEEMVVT 400 L+S+TA DP NG+RGKVG A LE+ + + Sbjct: 55 LISSTAVDPNNGNRGKVGAEASLEQWLTS 83
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 78.6 bits (192), Expect = 3e-15 Identities = 41/86 (47%), Positives = 59/86 (68%) Frame = +2 Query: 146 LVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFRLVSA 325 L D LTG E + K++GT VL+K +VLD DF+AS LD +H+ LG + ++ RLVS+ Sbjct: 5 LRDLLTGGGNETTTK-KVKGTVVLMKKNVLDFNDFNASFLDRLHEFLG--NKITLRLVSS 61 Query: 326 TAPDPQNGSRGKVGKPAHLEEMVVTM 403 D +NGS+GK+GK AHLE+ + T+ Sbjct: 62 DVTDSENGSKGKLGKAAHLEDWITTI 87
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 69.7 bits (169), Expect = 2e-12 Identities = 34/90 (37%), Positives = 61/90 (67%) Frame = +2 Query: 134 LLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFR 313 +L G++ LTG K +++G+ VL++ + LD+ DF A+++DG+ + LG+ GV+ + Sbjct: 1 MLGGIIGGLTGN-----KNARLKGSLVLMRKNALDINDFGATVIDGISEFLGR--GVTCQ 53 Query: 314 LVSATAPDPQNGSRGKVGKPAHLEEMVVTM 403 LVS++ DP NG+RG+VG A LE+ + ++ Sbjct: 54 LVSSSLVDPNNGNRGRVGTEASLEQWLTSL 83
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 69.3 bits (168), Expect = 2e-12 Identities = 41/85 (48%), Positives = 54/85 (63%) Frame = +2 Query: 134 LLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFR 313 +L GL D+LTGKN KI+G AVL+ +LD DF ASLLD VH++ G + ++ + Sbjct: 1 MLGGLKDKLTGKNGN-----KIKGLAVLMSRKLLDPRDFTASLLDNVHEVFG--NSITCQ 53 Query: 314 LVSATAPDPQNGSRGKVGKPAHLEE 388 LVSAT D N RG VG A+LE+ Sbjct: 54 LVSATVADQNNEGRGIVGSEANLEQ 78
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 60.1 bits (144), Expect = 1e-09 Identities = 34/90 (37%), Positives = 54/90 (60%) Frame = +2 Query: 134 LLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFR 313 +L LV L G + ++ K++GT V++K + LD D SL D + + LG+ VSF+ Sbjct: 1 MLGQLVGGLIGGHHDS---KKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQK--VSFQ 55 Query: 314 LVSATAPDPQNGSRGKVGKPAHLEEMVVTM 403 L+S+ DP NG +GK PA+LE ++T+ Sbjct: 56 LISSVQSDPANGLQGKHSNPAYLENFLLTL 85
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 55.8 bits (133), Expect = 2e-08 Identities = 28/70 (40%), Positives = 43/70 (61%) Frame = +2 Query: 194 KIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFRLVSATAPDPQNGSRGKVGKP 373 K++GT V++ +VLD D SL + +LG+ VSF+L+S+ DP NG +GK P Sbjct: 18 KVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQK--VSFQLISSVQGDPTNGLQGKHSNP 75 Query: 374 AHLEEMVVTM 403 A+LE + T+ Sbjct: 76 AYLENSLFTL 85
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 51.6 bits (122), Expect = 4e-07 Identities = 31/85 (36%), Positives = 51/85 (60%) Frame = +2 Query: 131 MLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSF 310 M L G+VD + GK+ K++G +L+K +VLD + AS++DG+ +LG+ VS Sbjct: 1 MSLGGIVDAILGKDDRP----KVKGRVILMKKNVLDFINIGASVVDGISDLLGQK--VSI 54 Query: 311 RLVSATAPDPQNGSRGKVGKPAHLE 385 +L+S + +G GK+ PA+LE Sbjct: 55 QLISGSV--NYDGLEGKLSNPAYLE 77
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 43.1 bits (100), Expect = 2e-04 Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 18/91 (19%) Frame = +2 Query: 185 KEGKIRGTAVLVKSDVLDL--------GDFH----------ASLLDGVHKILGKDDGVSF 310 K KIRGT VL++ +VLD G+ H S LDG+ LG+ VS Sbjct: 11 KGHKIRGTVVLMRKNVLDFNTIVSIGGGNVHGVIDSGINIIGSTLDGLTAFLGR--SVSL 68 Query: 311 RLVSATAPDPQNGSRGKVGKPAHLEEMVVTM 403 +L+SAT D NG +GKVGK LE ++ ++ Sbjct: 69 QLISATKSD-ANG-KGKVGKDTFLEGVLASL 97
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 42.0 bits (97), Expect = 3e-04 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 13/83 (15%) Frame = +2 Query: 194 KIRGTAVLVKSDVLDLG-------------DFHASLLDGVHKILGKDDGVSFRLVSATAP 334 KI+GT VL++ +VLD+ D S +D + LG+ VS +L+SAT P Sbjct: 14 KIKGTVVLMRKNVLDINSLTTVGGVIGQGFDILGSTVDNLTAFLGR--SVSLQLISATKP 71 Query: 335 DPQNGSRGKVGKPAHLEEMVVTM 403 D +GK+GK LE ++ ++ Sbjct: 72 DAT--GKGKLGKATFLEGIISSL 92
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 37.7 bits (86), Expect = 0.007 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 18/88 (20%) Frame = +2 Query: 194 KIRGTAVLVKSDVLDLGDFH------------------ASLLDGVHKILGKDDGVSFRLV 319 KI+GT VL++ +VLD S LD + LG+ V+ +L+ Sbjct: 18 KIKGTVVLMRKNVLDFNSVADLTKGNVGGLIGTGLNVVGSTLDNLTAFLGRS--VALQLI 75 Query: 320 SATAPDPQNGSRGKVGKPAHLEEMVVTM 403 SAT P NG +GKVGK LE ++V++ Sbjct: 76 SATKP-LANG-KGKVGKDTFLEGIIVSL 101
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 36.2 bits (82), Expect = 0.019 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 20/90 (22%) Frame = +2 Query: 194 KIRGTAVLVKSDVLDL--------------------GDFHASLLDGVHKILGKDDGVSFR 313 K++GT +L++ +VLD+ G S++D LG+ V R Sbjct: 11 KLKGTVILMQKNVLDINALTAAQSPSGIIGGAFGVVGSIAGSIIDTATAFLGR--SVRLR 68 Query: 314 LVSATAPDPQNGSRGKVGKPAHLEEMVVTM 403 L+SAT D +GKV K A LE ++ ++ Sbjct: 69 LISATVADA--SGKGKVSKEAFLEGLLTSI 96
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 33.9 bits (76), Expect = 0.095 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 20/93 (21%) Frame = +2 Query: 185 KEGKIRGTAVLVKSDVLDLGDF----HASLLDGVHKILGK----------------DDGV 304 K KI+GT VL+ +VLD ++D ILG+ + Sbjct: 7 KGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRNI 66 Query: 305 SFRLVSATAPDPQNGSRGKVGKPAHLEEMVVTM 403 S +L+SAT D GKVGK +LE+ + T+ Sbjct: 67 SMQLISATQTD--GSGNGKVGKEVYLEKHLPTL 97
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 32.7 bits (73), Expect = 0.21 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 13/79 (16%) Frame = +2 Query: 185 KEGKIRGTAVLVKSDVLDLGD-------------FHASLLDGVHKILGKDDGVSFRLVSA 325 K KI+GT V+++ +VLD+ F S +D + K +S +L+SA Sbjct: 7 KGQKIKGTMVVMQKNVLDINSITSVGGIVDQGLGFIGSAVDALTFAATK---ISIQLISA 63 Query: 326 TAPDPQNGSRGKVGKPAHL 382 T D G +GK+GK +L Sbjct: 64 TKAD---GGKGKIGKSTNL 79
>ZN205_HUMAN (O95201) Zinc finger protein 205 (Zinc finger protein 210)| Length = 504 Score = 30.4 bits (67), Expect = 1.0 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Frame = +2 Query: 11 HHCPPCAKCISKGTG--TH-RLCSSCSALPCLRCRTREQRRGEMLLH 142 H CP CAKC ++ + TH R + PC C +R ++ H Sbjct: 370 HKCPICAKCFTQSSALVTHQRTHTGVKPYPCPECGKCFSQRSNLIAH 416
>ZN449_HUMAN (Q6P9G9) Zinc finger protein 449 (Zinc finger and SCAN| domain-containing protein 19) Length = 518 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%) Frame = +2 Query: 11 HHCPPCAKCI---SKGTGTHRLCSSCSALPCLRCRTREQRRGEMLLH 142 H CP C KC S+ TG R+ S C C R R ++ H Sbjct: 323 HRCPQCGKCFARKSQLTGHQRIHSGEEPHKCPECGKRFLRSSDLYRH 369
>AT132_MOUSE (Q9CTG6) Probable cation-transporting ATPase 13A2 (EC 3.6.3.-)| Length = 1169 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = -1 Query: 384 SRCAGFPTLPRLPFCG---SGAVALTRRKETPSSLPRIL 277 ++ G+PT+P FC SG+ RK P LP++L Sbjct: 796 AKATGYPTVPEPQFCHLALSGSTFAVLRKHFPKLLPKVL 834
>IF2P_ARCFU (O29490) Probable translation initiation factor IF-2| Length = 595 Score = 29.6 bits (65), Expect = 1.8 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 7/77 (9%) Frame = +2 Query: 131 MLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLG-DFHASLLDGVHK------ILG 289 ++L GL R KN EGK RGT + VK + LG A L DG K I G Sbjct: 215 LILVGLAQRYLEKNLRLHIEGKGRGTVLEVKEE-RGLGVTCDAILYDGTLKVGDRIAIAG 273 Query: 290 KDDGVSFRLVSATAPDP 340 KD+ + + + P P Sbjct: 274 KDEVIVTNVKAILKPPP 290
>TRUA_GEOKA (Q5L3Q7) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 258 Score = 29.3 bits (64), Expect = 2.3 Identities = 31/113 (27%), Positives = 41/113 (36%), Gaps = 2/113 (1%) Frame = +2 Query: 2 PYHHHCPPCAKCISKGTGTHRLCSSCSALPCLRCRTREQRRGEMLLHG--LVDRLTGKNK 175 PY H + + GTH S CSA + R R R E+ G L R G Sbjct: 134 PYSLHISAMNEALRLLHGTHDFTSFCSAKTSIEDRVRTMYRAEVKADGPMLEFRFVG--- 190 Query: 176 EAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFRLVSATAP 334 G + ++ VL++G S D + KD RL TAP Sbjct: 191 ----SGFLYNMVRIIVGTVLEIGQGKRSPADISTLLAAKDR----RLAGPTAP 235
>MO4L1_MOUSE (P60762) Mortality factor 4-like protein 1 (MORF-related gene 15| protein) (Transcription factor-like protein MRG15) (Testis-expressed gene 189 protein) Length = 362 Score = 29.3 bits (64), Expect = 2.3 Identities = 21/73 (28%), Positives = 29/73 (39%) Frame = +2 Query: 170 NKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFRLVSATAPDPQNG 349 N+E + EGK+RG A K+ L + K G DG S ++ P P Sbjct: 119 NQEQYAEGKMRGAAPGKKTSGLQQKNVEVKTKKNKQKTPGNGDGGS----TSETPQPPRK 174 Query: 350 SRGKVGKPAHLEE 388 R +V EE Sbjct: 175 KRARVDPTVENEE 187
>MO4L1_HUMAN (Q9UBU8) Mortality factor 4-like protein 1 (MORF-related gene 15| protein) (Transcription factor-like protein MRG15) (MSL3-1 protein) Length = 362 Score = 29.3 bits (64), Expect = 2.3 Identities = 21/73 (28%), Positives = 29/73 (39%) Frame = +2 Query: 170 NKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFRLVSATAPDPQNG 349 N+E + EGK+RG A K+ L + K G DG S ++ P P Sbjct: 119 NQEQYAEGKMRGAAPGKKTSGLQQKNVEVKTKKNKQKTPGNGDGGS----TSETPQPPRK 174 Query: 350 SRGKVGKPAHLEE 388 R +V EE Sbjct: 175 KRARVDPTVENEE 187
>ZFP13_MOUSE (P10754) Zinc finger protein 13 (Zfp-13) (Krox-8 protein)| Length = 512 Score = 29.3 bits (64), Expect = 2.3 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Frame = +2 Query: 11 HHCPPCAKCISKGTG--TH-RLCSSCSALPCLRCRTREQRRGEMLLH 142 H CP C+KC ++ + TH R + PC C +R ++ H Sbjct: 378 HKCPICSKCFTQSSALVTHQRTHTGVKPYPCPECGKCFSQRSNLIAH 424
>MO4L1_RAT (Q6AYU1) Mortality factor 4-like protein 1 (MORF-related gene 15| protein) (Transcription factor-like protein MRG15) Length = 323 Score = 29.3 bits (64), Expect = 2.3 Identities = 21/73 (28%), Positives = 29/73 (39%) Frame = +2 Query: 170 NKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFRLVSATAPDPQNG 349 N+E + EGK+RG A K+ L + K G DG S ++ P P Sbjct: 80 NQEQYAEGKMRGAAPGKKTSGLQQKNVEVKTKKNKQKTPGNGDGGS----TSETPQPPRK 135 Query: 350 SRGKVGKPAHLEE 388 R +V EE Sbjct: 136 KRARVDPTVENEE 148
>MO4L1_PONPY (Q5NVP9) Mortality factor 4-like protein 1| Length = 323 Score = 28.9 bits (63), Expect = 3.0 Identities = 21/73 (28%), Positives = 29/73 (39%) Frame = +2 Query: 170 NKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGKDDGVSFRLVSATAPDPQNG 349 N+E + EGK+RG A K+ L + K G DG S ++ P P Sbjct: 80 NQEQYAEGKMRGAAPGKKTSGLQQKNVDVKTKKNKQKTPGNGDGGS----TSETPQPPRK 135 Query: 350 SRGKVGKPAHLEE 388 R +V EE Sbjct: 136 KRARVDPTVENEE 148
>DNAA_BIFLO (Q8G6K0) Chromosomal replication initiator protein dnaA| Length = 500 Score = 28.5 bits (62), Expect = 4.0 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Frame = +2 Query: 188 EGKIRGTAVLV--KSDVLDL--GDFHASLLDGVHKILGKDDGVSFRLVSATAPDPQNGSR 355 EG T VL +D L GD + SLL + + G++ +F++V T P+P + ++ Sbjct: 43 EGVFGSTIVLCVDNNDTLQAIQGDLNDSLLQALRTVTGENMFPAFKVVPKTEPEPLSEAK 102 Query: 356 GKVGKPAHLEEMV 394 P+ + V Sbjct: 103 PAQPYPSEISPTV 115
>ARI2_CAEEL (Q22431) Probable protein ariadne-2 (Ari-2)| Length = 482 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = +2 Query: 17 CPPCAKCISKGTGTHRLCSSCSALPCLRCR 106 CP C CI K G C+ + C RCR Sbjct: 287 CPQCHSCIEKAGG-------CNHIQCTRCR 309
>UVRA_BRUSU (Q8G0I9) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 974 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -3 Query: 64 PVGACPLADALGTRRAV 14 P GACP D LGT++A+ Sbjct: 294 PFGACPTCDGLGTQQAI 310
>UVRA_BRUME (Q8YHC4) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 974 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -3 Query: 64 PVGACPLADALGTRRAV 14 P GACP D LGT++A+ Sbjct: 294 PFGACPTCDGLGTQQAI 310
>UVRA_BRUAB (P0C0Z2) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 974 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -3 Query: 64 PVGACPLADALGTRRAV 14 P GACP D LGT++A+ Sbjct: 294 PFGACPTCDGLGTQQAI 310
>UVRA_BRUA2 (Q2YPX5) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 974 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -3 Query: 64 PVGACPLADALGTRRAV 14 P GACP D LGT++A+ Sbjct: 294 PFGACPTCDGLGTQQAI 310
>MT2_CALSI (P55950) Metallothionein-2B (MT-2B) (Metallothionein-IIB) (MT-IIB)| [Contains: Metallothionein-2A (MT-2A) (Metallothionein-IIA) (MT-IIA)] Length = 58 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = +2 Query: 17 CPPCAKCISKGTGTHR-LCSSCSALPCLRC 103 CPPC KC S+ T + CS + PC C Sbjct: 28 CPPCDKCSSECKCTSKEECSKTCSKPCSCC 57
>ARI2_HUMAN (O95376) Protein ariadne-2 homolog (ARI-2) (Triad1 protein)| Length = 493 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 1/30 (3%) Frame = +2 Query: 17 CPPCAKCISKGTG-THRLCSSCSALPCLRC 103 CP C CI K G H CS C C C Sbjct: 297 CPKCNICIEKNGGCNHMQCSKCKHDFCWMC 326
>U520_DROME (Q9VUV9) Putative U5 small nuclear ribonucleoprotein 200 kDa| helicase (EC 3.6.1.-) Length = 2142 Score = 28.1 bits (61), Expect = 5.2 Identities = 21/63 (33%), Positives = 31/63 (49%) Frame = +2 Query: 98 RCRTREQRRGEMLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVH 277 R R RE+ RG L ++ +L E +EG+ RG+ K D D G A + GV Sbjct: 348 RQRIREKMRGNSALAKILRQLDTGKSEDQEEGEARGSK-RGKGDAEDGGAAAAGQVAGVR 406 Query: 278 KIL 286 ++L Sbjct: 407 QLL 409
>SN1L2_MOUSE (Q8CFH6) Serine/threonine-protein kinase SNF1-like kinase 2 (EC| 2.7.11.1) (Salt-inducible kinase 2) Length = 931 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/19 (63%), Positives = 12/19 (63%) Frame = +1 Query: 7 PPPLPSLCQVHQQGDRHPP 63 PPPLPS Q HQQ PP Sbjct: 811 PPPLPSQLQQHQQPPPPPP 829
>PML_MOUSE (Q60953) Probable transcription factor PML| Length = 808 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 3/32 (9%) Frame = +2 Query: 17 CPPC---AKCISKGTGTHRLCSSCSALPCLRC 103 CP C AKC H LCS C P L+C Sbjct: 31 CPSCQAQAKCPKLLPCLHTLCSGCLEAPGLQC 62
>UVRA_RHILO (Q98M36) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 973 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -3 Query: 64 PVGACPLADALGTRRAV 14 P GACP D LG++RA+ Sbjct: 293 PFGACPTCDGLGSQRAI 309
>SUHW_DROVI (Q08876) Protein suppressor of hairy wing| Length = 899 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Frame = +2 Query: 8 HHHCPPCAKCISKGTGTHRLCS-----SCSALPCLRCRTREQRRGEMLLHGLVDRLTGK 169 H +CP C K T R SC+ PC C + + + LH +L GK Sbjct: 287 HINCPDCPKSFKTQTSYERHIFITHSWSCNDYPCSICNAKLRSGALLKLHEQQHQLRGK 345
>ARI2_MOUSE (Q9Z1K6) Protein ariadne-2 homolog (ARI-2) (Triad1 protein)| (UbcM4-interacting protein 48) Length = 492 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 1/30 (3%) Frame = +2 Query: 17 CPPCAKCISKGTG-THRLCSSCSALPCLRC 103 CP C CI K G H CS C C C Sbjct: 296 CPKCNICIEKNGGCNHMQCSKCKHDFCWMC 325
>OXAA_SALTY (Q8ZKY4) Inner membrane protein oxaA| Length = 548 Score = 27.7 bits (60), Expect = 6.8 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 9/65 (13%) Frame = +2 Query: 200 RGTAVLVKSDVLDL------GDFHASLLDGVHKILGKDDGVSFRLVSATAP---DPQNGS 352 +G + VK+DVLDL GD +LL K LG ++ F+L+ T Q+G Sbjct: 57 QGKMITVKTDVLDLTINTRGGDVEQALLPAYPKELGSNE--PFQLLETTPQFIYQAQSGL 114 Query: 353 RGKVG 367 G+ G Sbjct: 115 TGRDG 119
>OXAA_SALTI (Q8Z2N7) Inner membrane protein oxaA| Length = 548 Score = 27.7 bits (60), Expect = 6.8 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 9/65 (13%) Frame = +2 Query: 200 RGTAVLVKSDVLDL------GDFHASLLDGVHKILGKDDGVSFRLVSATAP---DPQNGS 352 +G + VK+DVLDL GD +LL K LG ++ F+L+ T Q+G Sbjct: 57 QGKMITVKTDVLDLTINTRGGDVEQALLPAYPKELGSNE--PFQLLETTPQFIYQAQSGL 114 Query: 353 RGKVG 367 G+ G Sbjct: 115 TGRDG 119
>MT_ASTFL (P55951) Metallothionein (MT)| Length = 58 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/29 (34%), Positives = 15/29 (51%) Frame = +2 Query: 17 CPPCAKCISKGTGTHRLCSSCSALPCLRC 103 C +C + G T +C+SC PC +C Sbjct: 6 CNDVCECAAGGCKTGCVCTSCRCSPCDKC 34
>ZNF96_MOUSE (Q9Z1D7) Zinc finger protein 96 (Zfp-96)| Length = 501 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 3/48 (6%) Frame = +2 Query: 8 HHHCPPCAKCISKGTGT-HRLCSSCSALP--CLRCRTREQRRGEMLLH 142 H+HC C K + G H L S P CL+C RR + H Sbjct: 352 HYHCNECGKAFCQKAGLFHHLKSHRRNRPYQCLQCNKSFNRRSTLSQH 399
>ZCHC4_XENTR (Q66IH9) Zinc finger CCHC domain-containing protein 4| Length = 487 Score = 27.7 bits (60), Expect = 6.8 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 12/77 (15%) Frame = +2 Query: 14 HCPPCAKCISKGTGTHRLCSSCS--ALP----------CLRCRTREQRRGEMLLHGLVDR 157 HC C KC+ K + TH CS+C+ ALP C C ++ +R H V Sbjct: 396 HCTQCNKCV-KPSWTH--CSACNHCALPDHPCGTAGRGCFLCGGKDHKR-RGCPHQSVS- 450 Query: 158 LTGKNKEAWKEGKIRGT 208 GK E K+ I+G+ Sbjct: 451 AHGKRMENLKQKNIKGS 467
>IBRD1_HUMAN (Q8TC41) IBR domain-containing protein 1| Length = 275 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%) Frame = +2 Query: 17 CPPCAKCISKGTGT-HRLCSSCSALPCLRCRTR 112 CP C I + G H CS C+ C RC R Sbjct: 131 CPKCKIHIQRTEGCDHMTCSQCNTNFCYRCGER 163
>PUR4_CAEEL (Q19311) Probable phosphoribosylformylglycinamidine synthase (EC| 6.3.5.3) (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1343 Score = 27.3 bits (59), Expect = 8.9 Identities = 23/72 (31%), Positives = 30/72 (41%) Frame = +2 Query: 47 GTGTHRLCSSCSALPCLRCRTREQRRGEMLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKS 226 G HR+ +C+ +R G L + D+ G N KE + G V VKS Sbjct: 484 GGKLHRVVRACA-----------ERIGGNPLMAIHDQGAGGNGNVIKE-LVEGCGVTVKS 531 Query: 227 DVLDLGDFHASL 262 D LGD SL Sbjct: 532 DTFQLGDESISL 543
>ZBT24_MOUSE (Q80X44) Zinc finger and BTB domain-containing protein 24 (Zinc| finger protein 450) (Bone morphogenetic protein-induced factor 1) (Brain-specific protein 1) Length = 710 Score = 27.3 bits (59), Expect = 8.9 Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 21/151 (13%) Frame = +2 Query: 11 HHCPPCAKCISKGTGTHRLC---SSCSALPCLRCRTREQRRGEMLLHGLVDRLTGKNKEA 181 + C C KC S + R C + C C + R + H ++ K K Sbjct: 461 YSCSICGKCFSDSSAKRRHCILHTGKKPFSCPECGLQFARLDNLKAH---LKIHSKEKHT 517 Query: 182 WKEGKIRGTAVLVKSDVLDLGDFHAS----------LLDGVHKI---LGKDDGVSFRLVS 322 + G+ V ++L L + S + D VH I G GVS +V+ Sbjct: 518 ADSSSVSGSNVDEGRNILQLQPYQLSTSGEQEIQLLVTDSVHNINFMPGPSQGVS--IVA 575 Query: 323 ATAP-----DPQNGSRGKVGKPAHLEEMVVT 400 A +P DP +P L+ ++++ Sbjct: 576 AESPQSMATDPAANITLLTQQPEQLQGLILS 606
>LIPA2_PROMP (Q7V0Z8) Lipoyl synthase 2 (EC 2.8.1.-) (Lipoic acid synthase 2)| (Lipoate synthase 2) (Lipoyl-acyl-carrier protein synthase 2) (Sulfur insertion protein lipA2) (Lip-syn 2) Length = 299 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/39 (30%), Positives = 19/39 (48%) Frame = +2 Query: 17 CPPCAKCISKGTGTHRLCSSCSALPCLRCRTREQRRGEM 133 CP A+C + GT T L S + C C+ + + E+ Sbjct: 50 CPNRAECYASGTATFLLGGSICSRACAFCQVNKGKPSEI 88
>SP5_MOUSE (Q9JHX2) Transcription factor Sp5| Length = 398 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -1 Query: 396 TTISSRCAGFPTLPRLPFCGSGAVA 322 T++SS CAG P PR P + A A Sbjct: 207 TSLSSACAGPPHAPRFPASAAAAAA 231 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,900,890 Number of Sequences: 219361 Number of extensions: 770946 Number of successful extensions: 3754 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 3576 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3738 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
