ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl01e08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_194082.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3510 Score = 63.9 bits (32), Expect = 3e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 134 gccgacggcgacgcggacgcgctgctcgcggccaaggcggcgctgtcggaccccacgggc 193 ||||||| |||||| ||||||||||| ||||| ||||| || |||||||||| || ||| Sbjct: 55 gccgacgccgacgccgacgcgctgctggcggcgaaggccgccatgtcggacccgaccggc 114 Query: 194 gcgctcgcgtcctggg 209 ||||| ||||| |||| Sbjct: 115 gcgctggcgtcgtggg 130
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 63.9 bits (32), Expect = 3e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 134 gccgacggcgacgcggacgcgctgctcgcggccaaggcggcgctgtcggaccccacgggc 193 ||||||| |||||| ||||||||||| ||||| ||||| || |||||||||| || ||| Sbjct: 31774877 gccgacgccgacgccgacgcgctgctggcggcgaaggccgccatgtcggacccgaccggc 31774936 Query: 194 gcgctcgcgtcctggg 209 ||||| ||||| |||| Sbjct: 31774937 gcgctggcgtcgtggg 31774952 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 cggcggcgcggccgacggcg 143 |||||||||||||||||||| Sbjct: 33017234 cggcggcgcggccgacggcg 33017253
>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence Length = 134496 Score = 63.9 bits (32), Expect = 3e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 134 gccgacggcgacgcggacgcgctgctcgcggccaaggcggcgctgtcggaccccacgggc 193 ||||||| |||||| ||||||||||| ||||| ||||| || |||||||||| || ||| Sbjct: 100103 gccgacgccgacgccgacgcgctgctggcggcgaaggccgccatgtcggacccgaccggc 100162 Query: 194 gcgctcgcgtcctggg 209 ||||| ||||| |||| Sbjct: 100163 gcgctggcgtcgtggg 100178
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 63.9 bits (32), Expect = 3e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 134 gccgacggcgacgcggacgcgctgctcgcggccaaggcggcgctgtcggaccccacgggc 193 ||||||| |||||| ||||||||||| ||||| ||||| || |||||||||| || ||| Sbjct: 31865393 gccgacgccgacgccgacgcgctgctggcggcgaaggccgccatgtcggacccgaccggc 31865452 Query: 194 gcgctcgcgtcctggg 209 ||||| ||||| |||| Sbjct: 31865453 gcgctggcgtcgtggg 31865468 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 cggcggcgcggccgacggcg 143 |||||||||||||||||||| Sbjct: 33107744 cggcggcgcggccgacggcg 33107763
>ref|XM_476541.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3072 Score = 52.0 bits (26), Expect = 0.001 Identities = 62/74 (83%) Strand = Plus / Plus Query: 131 gcggccgacggcgacgcggacgcgctgctcgcggccaaggcggcgctgtcggaccccacg 190 ||||||| ||||| || |||||||| ||||||| ||||||||||| ||||| ||| Sbjct: 67 gcggccggtggcgaagccgacgcgctcctcgcggtgaaggcggcgctcgacgacccgacg 126 Query: 191 ggcgcgctcgcgtc 204 |||||||||||||| Sbjct: 127 ggcgcgctcgcgtc 140
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 52.0 bits (26), Expect = 0.001 Identities = 62/74 (83%) Strand = Plus / Minus Query: 131 gcggccgacggcgacgcggacgcgctgctcgcggccaaggcggcgctgtcggaccccacg 190 ||||||| ||||| || |||||||| ||||||| ||||||||||| ||||| ||| Sbjct: 1848092 gcggccggtggcgaagccgacgcgctcctcgcggtgaaggcggcgctcgacgacccgacg 1848033 Query: 191 ggcgcgctcgcgtc 204 |||||||||||||| Sbjct: 1848032 ggcgcgctcgcgtc 1848019 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 atctcccggcggcgcggccgacgg 141 |||||| ||||||||||||||||| Sbjct: 27689698 atctccgggcggcgcggccgacgg 27689721
>gb|AF193835.1|AF193835 Oryza sativa LRK1 protein (LRK1) mRNA, complete cds Length = 3514 Score = 52.0 bits (26), Expect = 0.001 Identities = 62/74 (83%) Strand = Plus / Plus Query: 131 gcggccgacggcgacgcggacgcgctgctcgcggccaaggcggcgctgtcggaccccacg 190 ||||||| ||||| || |||||||| ||||||| ||||||||||| ||||| ||| Sbjct: 160 gcggccggtggcgaagccgacgcgctcctcgcggtgaaggcggcgctcgacgacccgacg 219 Query: 191 ggcgcgctcgcgtc 204 |||||||||||||| Sbjct: 220 ggcgcgctcgcgtc 233
>dbj|AP004338.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0507H12 Length = 143030 Score = 52.0 bits (26), Expect = 0.001 Identities = 62/74 (83%) Strand = Plus / Minus Query: 131 gcggccgacggcgacgcggacgcgctgctcgcggccaaggcggcgctgtcggaccccacg 190 ||||||| ||||| || |||||||| ||||||| ||||||||||| ||||| ||| Sbjct: 52671 gcggccggtggcgaagccgacgcgctcctcgcggtgaaggcggcgctcgacgacccgacg 52612 Query: 191 ggcgcgctcgcgtc 204 |||||||||||||| Sbjct: 52611 ggcgcgctcgcgtc 52598
>dbj|AP003742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_D07 Length = 131449 Score = 52.0 bits (26), Expect = 0.001 Identities = 62/74 (83%) Strand = Plus / Minus Query: 131 gcggccgacggcgacgcggacgcgctgctcgcggccaaggcggcgctgtcggaccccacg 190 ||||||| ||||| || |||||||| ||||||| ||||||||||| ||||| ||| Sbjct: 100311 gcggccggtggcgaagccgacgcgctcctcgcggtgaaggcggcgctcgacgacccgacg 100252 Query: 191 ggcgcgctcgcgtc 204 |||||||||||||| Sbjct: 100251 ggcgcgctcgcgtc 100238
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 46.1 bits (23), Expect = 0.070 Identities = 26/27 (96%) Strand = Plus / Plus Query: 139 cggcgacgcggacgcgctgctcgcggc 165 ||||||||||||||||||| ||||||| Sbjct: 506834 cggcgacgcggacgcgctggtcgcggc 506860 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ggacgcgctgctcgcggcca 167 |||||||||||||||||||| Sbjct: 4597626 ggacgcgctgctcgcggcca 4597607 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 cggcgacgcggacgcgctgc 158 |||||||||||||||||||| Sbjct: 1074603 cggcgacgcggacgcgctgc 1074584
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 46.1 bits (23), Expect = 0.070 Identities = 23/23 (100%) Strand = Plus / Minus Query: 153 cgctgctcgcggccaaggcggcg 175 ||||||||||||||||||||||| Sbjct: 5348990 cgctgctcgcggccaaggcggcg 5348968 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 ccggcggcgcggccgacggcg 143 ||||||||||||||||||||| Sbjct: 3130021 ccggcggcgcggccgacggcg 3130001
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 44.1 bits (22), Expect = 0.27 Identities = 25/26 (96%) Strand = Plus / Plus Query: 123 ccggcggcgcggccgacggcgacgcg 148 |||||||||||||||||| ||||||| Sbjct: 820429 ccggcggcgcggccgacgccgacgcg 820454 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 137 gacggcgacgcggacgcgctgctcgcgg 164 ||||||||||| | |||||||||||||| Sbjct: 2490230 gacggcgacgcagccgcgctgctcgcgg 2490257
>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome Length = 195859 Score = 44.1 bits (22), Expect = 0.27 Identities = 28/30 (93%) Strand = Plus / Plus Query: 124 cggcggcgcggccgacggcgacgcggacgc 153 ||||||||| ||||||||||||| |||||| Sbjct: 141869 cggcggcgccgccgacggcgacgaggacgc 141898
>ref|XM_468538.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1865 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 142 cgacgcggacgcgctgctcgc 162 ||||||||||||||||||||| Sbjct: 330 cgacgcggacgcgctgctcgc 350
>ref|XM_450537.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3137 Score = 42.1 bits (21), Expect = 1.1 Identities = 51/61 (83%) Strand = Plus / Plus Query: 139 cggcgacgcggacgcgctgctcgcggccaaggcggcgctgtcggaccccacgggcgcgct 198 ||||||||||| |||||| ||||| |||| ||| ||||| ||||||| || | |||||| Sbjct: 121 cggcgacgcgggcgcgctcctcgccgccagggccgcgctcacggacccgaccgccgcgct 180 Query: 199 c 199 | Sbjct: 181 c 181
>ref|NM_189326.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3042 Score = 42.1 bits (21), Expect = 1.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 166 caaggcggcgctgtcggaccccacgggcgcgct 198 |||| ||||||||||||||||| | |||||||| Sbjct: 108 caagtcggcgctgtcggacccctccggcgcgct 140
>ref|XM_366890.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG02966.4) partial mRNA Length = 915 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 gcggcgctgtcggaccccacg 190 ||||||||||||||||||||| Sbjct: 406 gcggcgctgtcggaccccacg 426
>ref|XM_879672.1| PREDICTED: Bos taurus hypothetical protein LOC615338 (LOC615338), mRNA Length = 1938 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 119 tctcccggcggcgcggccgacggcg 143 ||||||||||||||||| ||||||| Sbjct: 1384 tctcccggcggcgcggcggacggcg 1408
>gb|CP000320.1| Nitrobacter hamburgensis X14 plasmid 1, complete sequence Length = 294829 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 152 gcgctgctcgcggccaaggcggcgc 176 |||||||||||||||| |||||||| Sbjct: 272398 gcgctgctcgcggccatggcggcgc 272422 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 152 gcgctgctcgcggccaaggcggcgc 176 |||||||||||||||| |||||||| Sbjct: 265479 gcgctgctcgcggccatggcggcgc 265503
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 276 gcgcgcgcggggccgtcgcgg 296 ||||||||||||||||||||| Sbjct: 2494472 gcgcgcgcggggccgtcgcgg 2494492
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 159 tcgcggccaaggcggcgctgt 179 ||||||||||||||||||||| Sbjct: 2106606 tcgcggccaaggcggcgctgt 2106626
>gb|AE005780.1| Caulobacter crescentus CB15 section 106 of 359 of the complete genome Length = 14131 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 cggcggcgcggccgacggcga 144 ||||||||||||||||||||| Sbjct: 13372 cggcggcgcggccgacggcga 13352
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 ccggcggcgcggccgacggcg 143 ||||||||||||||||||||| Sbjct: 1607193 ccggcggcgcggccgacggcg 1607173
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 127 cggcgcggccgacggcgacgc 147 ||||||||||||||||||||| Sbjct: 3975508 cggcgcggccgacggcgacgc 3975488
>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome Length = 143461 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 272 tgcggcgcgcgcggggccgtcgcggggct 300 ||||||||| |||||| |||||||||||| Sbjct: 21931 tgcggcgcgggcggggacgtcgcggggct 21903
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 252 gcgcgtgggcggacgtgtcgtgcggcgcg 280 ||||| ||||||||||| ||||||||||| Sbjct: 1018613 gcgcgagggcggacgtgccgtgcggcgcg 1018641
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.1 Identities = 51/61 (83%) Strand = Plus / Minus Query: 139 cggcgacgcggacgcgctgctcgcggccaaggcggcgctgtcggaccccacgggcgcgct 198 ||||||||||| |||||| ||||| |||| ||| ||||| ||||||| || | |||||| Sbjct: 9528131 cggcgacgcgggcgcgctcctcgccgccagggccgcgctcacggacccgaccgccgcgct 9528072 Query: 199 c 199 | Sbjct: 9528071 c 9528071
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 134 gccgacggcgacgcggacgcgctgc 158 |||||||||||||||| |||||||| Sbjct: 6596860 gccgacggcgacgcggccgcgctgc 6596836
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 142 cgacgcggacgcgctgctcgc 162 ||||||||||||||||||||| Sbjct: 35728964 cgacgcggacgcgctgctcgc 35728944 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 215 ccggcggcggcgagcaacggg 235 ||||||||||||||||||||| Sbjct: 3084119 ccggcggcggcgagcaacggg 3084099 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tcccggcggcgcggccgacg 140 |||||||||||||||||||| Sbjct: 10066306 tcccggcggcgcggccgacg 10066325 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 atctcccggcggcgcggccgacgg 141 |||||| ||||||||||||||||| Sbjct: 6902126 atctccgggcggcgcggccgacgg 6902149 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 atctcccggcggcgcggccgacgg 141 |||||| ||||||||||||||||| Sbjct: 6496507 atctccgggcggcgcggccgacgg 6496484
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 166 caaggcggcgctgtcggaccccacgggcgcgct 198 |||| ||||||||||||||||| | |||||||| Sbjct: 42176705 caagtcggcgctgtcggacccctccggcgcgct 42176737 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 cggcggcggcgagcaacggg 235 |||||||||||||||||||| Sbjct: 36653926 cggcggcggcgagcaacggg 36653907 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 gcggccgacggcgacgcggacgcg 154 |||||||||||||| ||||||||| Sbjct: 4782838 gcggccgacggcgaggcggacgcg 4782861
>dbj|AP004326.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1294_F06 Length = 121088 Score = 42.1 bits (21), Expect = 1.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 166 caaggcggcgctgtcggaccccacgggcgcgct 198 |||| ||||||||||||||||| | |||||||| Sbjct: 49903 caagtcggcgctgtcggacccctccggcgcgct 49935
>gb|AF193251.1|AF193251 Streptomyces venezuelae polyketide synthase module 5 and polyketide synthase module 6 genes, partial cds Length = 404 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 123 ccggcggcgcggccgacggcgacgcggac 151 |||||||| |||||||||||| ||||||| Sbjct: 88 ccggcggcccggccgacggcgccgcggac 116
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0425F05 Length = 162858 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 134 gccgacggcgacgcggacgcgctgc 158 |||||||||||||||| |||||||| Sbjct: 30986 gccgacggcgacgcggccgcgctgc 30962
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0690H04 Length = 137319 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 134 gccgacggcgacgcggacgcgctgc 158 |||||||||||||||| |||||||| Sbjct: 113236 gccgacggcgacgcggccgcgctgc 113212
>dbj|AP004871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0419H03 Length = 129020 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 215 ccggcggcggcgagcaacggg 235 ||||||||||||||||||||| Sbjct: 12273 ccggcggcggcgagcaacggg 12253
>dbj|AP005593.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0692F07 Length = 141544 Score = 42.1 bits (21), Expect = 1.1 Identities = 51/61 (83%) Strand = Plus / Minus Query: 139 cggcgacgcggacgcgctgctcgcggccaaggcggcgctgtcggaccccacgggcgcgct 198 ||||||||||| |||||| ||||| |||| ||| ||||| ||||||| || | |||||| Sbjct: 91767 cggcgacgcgggcgcgctcctcgccgccagggccgcgctcacggacccgaccgccgcgct 91708 Query: 199 c 199 | Sbjct: 91707 c 91707
>dbj|AP004043.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_D06 Length = 102239 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 142 cgacgcggacgcgctgctcgc 162 ||||||||||||||||||||| Sbjct: 89578 cgacgcggacgcgctgctcgc 89558
>dbj|AK120843.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022K03, full insert sequence Length = 3136 Score = 42.1 bits (21), Expect = 1.1 Identities = 51/61 (83%) Strand = Plus / Plus Query: 139 cggcgacgcggacgcgctgctcgcggccaaggcggcgctgtcggaccccacgggcgcgct 198 ||||||||||| |||||| ||||| |||| ||| ||||| ||||||| || | |||||| Sbjct: 120 cggcgacgcgggcgcgctcctcgccgccagggccgcgctcacggacccgaccgccgcgct 179 Query: 199 c 199 | Sbjct: 180 c 180
>dbj|AK101172.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028O18, full insert sequence Length = 1857 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 142 cgacgcggacgcgctgctcgc 162 ||||||||||||||||||||| Sbjct: 322 cgacgcggacgcgctgctcgc 342
>emb|X14573.1|PVRICP18 Pseudorabies virus ICP18.5 gene Length = 2524 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 272 tgcggcgcgcgcggggccgtcgcggggct 300 ||||||||| |||||| |||||||||||| Sbjct: 58 tgcggcgcgggcggggacgtcgcggggct 86
>ref|NM_185045.1| Oryza sativa (japonica cultivar-group), mRNA Length = 246 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 cggcggcgcggccgacggcg 143 |||||||||||||||||||| Sbjct: 77 cggcggcgcggccgacggcg 96
>ref|XM_464717.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1381 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 atctcccggcggcgcggccgacgg 141 |||||| ||||||||||||||||| Sbjct: 604 atctccgggcggcgcggccgacgg 627
>ref|XM_464716.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1408 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 atctcccggcggcgcggccgacgg 141 |||||| ||||||||||||||||| Sbjct: 466 atctccgggcggcgcggccgacgg 443
>ref|XM_464651.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1339 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 atctcccggcggcgcggccgacgg 141 |||||| ||||||||||||||||| Sbjct: 611 atctccgggcggcgcggccgacgg 634
>ref|XM_464928.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1233 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 tcccggcggcgcggccgacg 140 |||||||||||||||||||| Sbjct: 241 tcccggcggcgcggccgacg 222
>ref|NM_190629.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1011 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 cggcggcggcgagcaacggg 235 |||||||||||||||||||| Sbjct: 11 cggcggcggcgagcaacggg 30
>ref|XM_525097.1| PREDICTED: Pan troglodytes similar to interferon regulatory factor 2 binding protein 2 (LOC469713), mRNA Length = 3240 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 272 tgcggcgcgcgcggggccgtcgcggggc 299 ||||||||||||||||||| | |||||| Sbjct: 1811 tgcggcgcgcgcggggccgcctcggggc 1784
>ref|NM_182972.1| Homo sapiens interferon regulatory factor 2 binding protein 2 (IRF2BP2), mRNA Length = 1900 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 272 tgcggcgcgcgcggggccgtcgcggggc 299 ||||||||||||||||||| | |||||| Sbjct: 366 tgcggcgcgcgcggggccgcctcggggc 339
>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence Length = 179668 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 atctcccggcggcgcggccgacgg 141 |||||| ||||||||||||||||| Sbjct: 98724 atctccaggcggcgcggccgacgg 98747
>gb|AC108499.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1187_E11, complete sequence Length = 133352 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 gcgcggccgacggcgacgcggacg 152 |||||||||||| ||||||||||| Sbjct: 118586 gcgcggccgacgccgacgcggacg 118563
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 gcgctgctcgcggccaaggc 171 |||||||||||||||||||| Sbjct: 2332998 gcgctgctcgcggccaaggc 2333017
>gb|AC111015.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1131_E09, complete sequence Length = 94399 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 gcgcggccgacggcgacgcggacg 152 |||||||||||| ||||||||||| Sbjct: 11165 gcgcggccgacgccgacgcggacg 11142
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 4.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 135 ccgacggcgacgcggacgcgctgctcgcggccaagg 170 ||||||||||||| |||||| | |||||||||||| Sbjct: 52787 ccgacggcgacgccgacgcgatcatcgcggccaagg 52752
>emb|AL160408.24| Human DNA sequence from clone RP4-781K5 on chromosome 1q42.1-43, complete sequence Length = 132887 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 272 tgcggcgcgcgcggggccgtcgcggggc 299 ||||||||||||||||||| | |||||| Sbjct: 4368 tgcggcgcgcgcggggccgcctcggggc 4395
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 ggacgcgctgctcgcggcca 167 |||||||||||||||||||| Sbjct: 175202 ggacgcgctgctcgcggcca 175221
>gb|AY278024.1| Homo sapiens interferon regulatory factor-2 binding protein 2B mRNA, complete cds; alternatively spliced Length = 1852 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 272 tgcggcgcgcgcggggccgtcgcggggc 299 ||||||||||||||||||| | |||||| Sbjct: 366 tgcggcgcgcgcggggccgcctcggggc 339
>gb|AY278023.1| Homo sapiens interferon regulatory factor-2 binding protein 2A mRNA, complete cds; alternatively spliced Length = 1900 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 272 tgcggcgcgcgcggggccgtcgcggggc 299 ||||||||||||||||||| | |||||| Sbjct: 366 tgcggcgcgcgcggggccgcctcggggc 339
>gb|AF325217.1| Rhodopseudomonas palustris membrane-bound proton-translocating pyrophosphatase gene, complete cds Length = 2437 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ccggcggcgcggccgacggc 142 |||||||||||||||||||| Sbjct: 1736 ccggcggcgcggccgacggc 1717
>gb|AE005912.1| Caulobacter crescentus CB15 section 238 of 359 of the complete genome Length = 10452 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 cgcggggctggccctcggcg 311 |||||||||||||||||||| Sbjct: 465 cgcggggctggccctcggcg 484
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 277 cgcgcgcggggccgtcgcggggct 300 ||||||||||||| |||||||||| Sbjct: 3139971 cgcgcgcggggccatcgcggggct 3139994
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 atctcccggcggcgcggccgacgg 141 |||||| ||||||||||||||||| Sbjct: 28140169 atctccaggcggcgcggccgacgg 28140192
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 gcgcggccgacggcgacgcggacg 152 |||||||||||| ||||||||||| Sbjct: 26093825 gcgcggccgacgccgacgcggacg 26093802
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 gacgcggacgcgctgctcgc 162 |||||||||||||||||||| Sbjct: 8481147 gacgcggacgcgctgctcgc 8481166 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 gcgcggccgacggcgacgcg 148 |||||||||||||||||||| Sbjct: 2078433 gcgcggccgacggcgacgcg 2078414
>gb|AE004656.1| Pseudomonas aeruginosa PAO1, section 217 of 529 of the complete genome Length = 13104 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ggcggcgcggccgacggcga 144 |||||||||||||||||||| Sbjct: 12560 ggcggcgcggccgacggcga 12541
>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete sequence Length = 139823 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cggcggcgcggccgacggcg 143 |||||||||||||||||||| Sbjct: 106074 cggcggcgcggccgacggcg 106055
>dbj|AP004072.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529H11 Length = 165969 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 cggcggcggcgagcaacggg 235 |||||||||||||||||||| Sbjct: 127192 cggcggcggcgagcaacggg 127173
>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0047B07 Length = 157797 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 atctcccggcggcgcggccgacgg 141 |||||| ||||||||||||||||| Sbjct: 146691 atctccgggcggcgcggccgacgg 146714
>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1477_F01 Length = 158792 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 atctcccggcggcgcggccgacgg 141 |||||| ||||||||||||||||| Sbjct: 68800 atctccgggcggcgcggccgacgg 68823
>dbj|AP002836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0512G09 Length = 146921 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 gcggccgacggcgacgcggacgcg 154 |||||||||||||| ||||||||| Sbjct: 143083 gcggccgacggcgaggcggacgcg 143106
>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0710E05 Length = 179714 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 gcggccgacggcgacgcggacgcg 154 |||||||||||||| ||||||||| Sbjct: 27487 gcggccgacggcgaggcggacgcg 27510
>dbj|AP005846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1307A11 Length = 131538 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 atctcccggcggcgcggccgacgg 141 |||||| ||||||||||||||||| Sbjct: 57120 atctccgggcggcgcggccgacgg 57097
>dbj|AP004771.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0413A11 Length = 188440 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tcccggcggcgcggccgacg 140 |||||||||||||||||||| Sbjct: 140999 tcccggcggcgcggccgacg 141018
>dbj|AP004770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017G06 Length = 150628 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tcccggcggcgcggccgacg 140 |||||||||||||||||||| Sbjct: 14000 tcccggcggcgcggccgacg 14019
>dbj|AP005826.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0758B01 Length = 159206 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 atctcccggcggcgcggccgacgg 141 |||||| ||||||||||||||||| Sbjct: 119852 atctccgggcggcgcggccgacgg 119875
>emb|AJ251726.1|CVI251726 Chromatium vinosum partial vppa gene for putative proton-translocating inorganic pyrophosphatase Length = 591 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ccggcggcgcggccgacggc 142 |||||||||||||||||||| Sbjct: 293 ccggcggcgcggccgacggc 274
>gb|U05002.1|PDNIRSECF Paracoccus denitrificans Pd1222 nirI, cytochrome cd1 nitrite reductase (nirS), S-adenosyl-L-methionine uroporphyrinogen III methyltransferase (nirE), cytochrome c (nirC), nirF and nirD genes, complete cds Length = 5574 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 cgcggggctggccctcggcg 311 |||||||||||||||||||| Sbjct: 2158 cgcggggctggccctcggcg 2139
>dbj|AK108023.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-136-A05, full insert sequence Length = 671 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 cggcggcgcggccgacggcg 143 |||||||||||||||||||| Sbjct: 222 cggcggcgcggccgacggcg 241
>dbj|AK100220.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023046M01, full insert sequence Length = 1409 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 atctcccggcggcgcggccgacgg 141 |||||| ||||||||||||||||| Sbjct: 467 atctccgggcggcgcggccgacgg 444
>dbj|AK068568.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152N14, full insert sequence Length = 1381 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 atctcccggcggcgcggccgacgg 141 |||||| ||||||||||||||||| Sbjct: 604 atctccgggcggcgcggccgacgg 627
>emb|AM230889.1| Paracoccus denitrificans nirS gene for nitrite reductase, strain LMG 4049 Length = 747 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 cgcggggctggccctcggcg 311 |||||||||||||||||||| Sbjct: 673 cgcggggctggccctcggcg 654
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 gcggcgcggccgacggcgacgcgg 149 ||||||||||||||| |||||||| Sbjct: 2365812 gcggcgcggccgacgtcgacgcgg 2365789 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 gcggcgcggccgacggcgacgcgg 149 |||||||||||| ||||||||||| Sbjct: 1979140 gcggcgcggccggcggcgacgcgg 1979163 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 cgcggccgacggcgacgcggacgc 153 ||||||||||| |||||||||||| Sbjct: 978064 cgcggccgacgccgacgcggacgc 978087
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 atctcccggcggcgcggccgacgg 141 |||||| ||||||||||||||||| Sbjct: 28125047 atctccaggcggcgcggccgacgg 28125070
>gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, partial genome Length = 189370 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 cggacgcgctgctcgcggcc 166 |||||||||||||||||||| Sbjct: 188482 cggacgcgctgctcgcggcc 188501 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,966,424 Number of Sequences: 3902068 Number of extensions: 1966424 Number of successful extensions: 49884 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 45733 Number of HSP's gapped (non-prelim): 4151 length of query: 325 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 303 effective length of database: 17,147,199,772 effective search space: 5195601530916 effective search space used: 5195601530916 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
