>YMS5_CAEEL (P34501) Hypothetical protein K03H1.5 precursor|
          Length = 1385

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = -3

Query: 390  SDYRASFNIRHLHLYL-----SGQFSPSVCLIPREISATDWNPEHLSKFHQEEKSKENPS 226
            +D+R++FN+      +     S Q+SP V   P   S     P + +   Q+++  E P 
Sbjct: 1313 TDFRSNFNMNQPSRPIPSQPPSSQYSPPVFAAPPPPSQPTRLPTYTNAISQQQRQFEPPR 1372

Query: 225  PPQPN 211
            PP+ N
Sbjct: 1373 PPRGN 1377

>TNC6B_HUMAN (Q9UPQ9) Trinucleotide repeat-containing 6B protein|
          Length = 1723

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
 Frame = -3

Query: 285 WN-----PEHLSKFHQEEKSKENPSPPQPNCAGA 199
           WN     P   +K HQ+++  + P PPQP  +G+
Sbjct: 806 WNETGRQPNSWNKQHQQQQPPQQPPPPQPEASGS 839

>RAB3C_HUMAN (Q96E17) Ras-related protein Rab-3C|
          Length = 227

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 255 QEEKSKENPSPPQPNCA 205
           Q  + KE P PPQPNCA
Sbjct: 210 QNTRLKETPPPPQPNCA 226

>IE0_NPVAC (P41710) Immediate-early protein IE-0 (Immediate early 0 protein)|
           (Immediate early transactivator 0)
          Length = 261

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 191 LNTDESFLEPKRTRESA--NQCCIYRW 117
           ++TDE FL+PK   E A  N CC+  W
Sbjct: 218 ISTDERFLKPKECCEYAICNACCVNMW 244

>EXRN_BPT3 (P20321) Exodeoxyribonuclease (EC 3.1.11.3) (Exonuclease)|
          Length = 302

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +3

Query: 18  SDWTGVIW--CASHWRSR*ARVLDSSTEPLPGRQKPPVDATLVGAFSSAFRFQKTLI 182
           + W   IW  C  H ++R  ++L+ S +    R+K  V A +V AF+ +  ++K L+
Sbjct: 41  ASWEEEIWHRCCDHAKAR--QILEDSIKSYETRKKAWVGAPIVLAFTDSVNWRKELV 95

>MILK1_MOUSE (Q8BGT6) Molecule interacting with Rab13 (MIRab13) (MICAL-like|
           protein 1)
          Length = 870

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 297 SATDWNPEHLSKFHQEEKSKENPSPPQPNCAGANPI 190
           S T+  P+  + F +EE+ +  P+PP P+ + A P+
Sbjct: 411 SGTEPEPKPYNPFEEEEEEEGEPAPPVPSPSLAPPV 446

>TWHH_BRARE (Q90419) Tiggy-winkle hedgehog protein precursor (TWHH) (Sonic|
           hedgehog B protein) (SHHB) [Contains: Tiggy-winkle
           hedgehog protein N-product; Tiggy-winkle hedgehog
           protein C-product]
          Length = 416

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 148 KAPTSVASTGGFCLPGSGSVLL 83
           KA  SVA+  G C PGSG+V L
Sbjct: 189 KAENSVAAKSGGCFPGSGTVTL 210

>BIOH_XYLFT (Q87DT3) Carboxylesterase bioH (EC 3.1.1.1) (Biotin synthesis|
           protein bioH)
          Length = 255

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 8   CFVKRLDWCHLVRVALEE*MSTSARQQYRTT 100
           CFV+R DW H V V++    +   +Q Y  T
Sbjct: 105 CFVRREDWPHAVEVSILTQFAQDLKQNYTET 135

>BIOH_XYLFA (Q9PDM3) Carboxylesterase bioH (EC 3.1.1.1) (Biotin synthesis|
           protein bioH)
          Length = 255

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 8   CFVKRLDWCHLVRVALEE*MSTSARQQYRTT 100
           CFV+R DW H V V++    +   +Q Y  T
Sbjct: 105 CFVRREDWPHAVEVSIFTQFAEDLKQNYTET 135

>MDC1_MOUSE (Q5PSV9) Mediator of DNA damage checkpoint protein 1|
          Length = 1707

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = -2

Query: 364  QASPSLPLRAIFSFCLLNPERDFSH*LEPGASLEIPPRRKEQRKPESAATKLRRREPY*T 185
            Q S ++PL       L  PE   S     GAS    PR+K  R+  S  T + + EP  T
Sbjct: 1408 QGSRTVPLGHKSYSALSEPEPQSSASQSSGASEADSPRQKRPRRQASQKTVVIKEEPVET 1467

Query: 184  QMR 176
            +++
Sbjct: 1468 EVK 1470

>SCAR4_ARATH (Q5XPJ6) Protein SCAR4 (AtSCAR4) (Protein WAVE3)|
          Length = 1170

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -3

Query: 375  SFNIRHLHLYLSGQFSPSVCLIPREISATDWNPEHLSKFHQEEKSKENPSPPQPN 211
            SFNI+      +G    +    P E+S TD    +   + +E K+ E  SP   N
Sbjct: 920  SFNIQRDENTQNGSVQANEAQYPSEVSVTDGENHNFHIYTEESKATEEQSPSGVN 974


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,038,372
Number of Sequences: 219361
Number of extensions: 1285579
Number of successful extensions: 3732
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3729
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)