Clone Name | bastl01e05 |
---|---|
Clone Library Name | barley_pub |
>WNK4_RAT (Q7TPK6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1)| (Protein kinase with no lysine 4) (Protein kinase, lysine-deficient 4) Length = 1222 Score = 35.4 bits (80), Expect = 0.065 Identities = 21/52 (40%), Positives = 26/52 (50%) Frame = +1 Query: 166 GGAPAVYQSAHCPRWTILSGGEGDGEKVSSSPQPRRCHVAAHRGRRRSQEDR 321 G AP + CP T+ SGG G S +P R AA R RRR QE++ Sbjct: 110 GAAPVKAADSACPELTVSSGGPG-------SREPPRVPDAAARERRREQEEK 154
>FEM2_CAEEL (P49594) Ca(2+)/calmodulin-dependent protein kinase phosphatase (EC| 3.1.3.16) (CaM-kinase phosphatase) (CaMKPase) (Sex-determining protein fem-2) (Feminization of XX and XO animals protein 2) Length = 449 Score = 35.0 bits (79), Expect = 0.084 Identities = 19/51 (37%), Positives = 28/51 (54%) Frame = +1 Query: 292 RGRRRSQEDRAVCALGIRIPFLEQMRIKEVDVGVMAIFDGHNGDEASEMAS 444 +G+R QEDR + P + M E + V+A+FDGH G E S+ A+ Sbjct: 169 KGQRHKQEDRFLA-----YPNGQYMDRGEDPISVLAVFDGHGGHECSQYAA 214
>WNK4_MOUSE (Q80UE6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1)| (Protein kinase with no lysine 4) (Protein kinase, lysine-deficient 4) Length = 1222 Score = 33.1 bits (74), Expect = 0.32 Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 7/113 (6%) Frame = +1 Query: 4 RKPIILLPLLYSGDSPMSLQLSGRRTVLFLILIELLVPPRCAGESATCLAVYRE------ 165 R+ + L LL S P SL L E PP AG + + + +E Sbjct: 61 RRSSVDLGLLSSWSQPASL------------LPEPPDPPDSAGPTRSPPSSSKEPPEGTW 108 Query: 166 -GGAPAVYQSAHCPRWTILSGGEGDGEKVSSSPQPRRCHVAAHRGRRRSQEDR 321 G AP + CP T SGG G S +P R AA R RRR QE++ Sbjct: 109 MGAAPVKAVDSACPELTGSSGGPG-------SREPPRVPDAAARERRREQEEK 154
>EF1A_PIRIN (Q9HDF6) Elongation factor 1-alpha (EF-1-alpha)| Length = 462 Score = 33.1 bits (74), Expect = 0.32 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = +3 Query: 6 QAHNSSSPPLLRRLADVLTAIRPPYRPLSHPHRAPGAATVR-GGVG 140 + SSSP + L D + AI PP RP P R P + GG+G Sbjct: 215 EVKGSSSPATGKTLVDAIDAIEPPVRPSDKPLRLPLQDVYKIGGIG 260
>PP2C4_YEAST (P38089) Protein phosphatase 2C homolog 4 (EC 3.1.3.16) (PP2C-4)| Length = 393 Score = 32.0 bits (71), Expect = 0.71 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 7/62 (11%) Frame = +1 Query: 280 VAAHRGRRRSQED-------RAVCALGIRIPFLEQMRIKEVDVGVMAIFDGHNGDEASEM 438 V + +G R +QED +V + PF++ + + + + V A+FDGH GD+ S+ Sbjct: 36 VGSMQGYRLTQEDAHLIRNENSVVYVRFFNPFID--KYETLSLNVFAVFDGHGGDDCSKF 93 Query: 439 AS 444 S Sbjct: 94 LS 95
>CCMF_BRAJA (P45403) Cytochrome c-type biogenesis protein cycK| Length = 660 Score = 31.2 bits (69), Expect = 1.2 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Frame = -1 Query: 261 RGGGDLLPIPLAAGEDGPAGAVRGLVHRG---RAALAVHGKARRRLPRAPW 118 RGG L P+ + G AGAV LV R R LA + R LPR+ W Sbjct: 444 RGGSALAPLAIGLGVFVIAGAVTDLVERTGLVRLPLATALQRARGLPRSAW 494
>ARGB_DEIRA (Q9RRP6) Acetylglutamate/acetylaminoadipate kinase (EC 2.7.2.8) (EC| 2.7.2.-) (NAG kinase) (AGK) (N-acetyl-L-glutamate/N-acetyl-L-aminoadipate 5-phosphotransferase) Length = 249 Score = 30.8 bits (68), Expect = 1.6 Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 11/74 (14%) Frame = -1 Query: 255 GGDLLPIP--LAAGEDGPA---------GAVRGLVHRGRAALAVHGKARRRLPRAPWRHQ 109 G L P+ +A GEDG A GAV G + G L R P R Sbjct: 127 GAGLTPVVGCVAVGEDGEALNVNADTVAGAVAGALGEGAVFLTDVDGVYRAYPDPDSRAA 186 Query: 108 ELDEDEKEDGTAAG 67 +L E EDG AAG Sbjct: 187 QLTRAEVEDGLAAG 200
>NRFA_PENUR (Q92269) Nitrogen regulatory protein nrfA| Length = 865 Score = 29.3 bits (64), Expect = 4.6 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%) Frame = -1 Query: 276 APPRLRGGGDL-----LPIPLAAGEDGPAGAVRGLVHRGRAALAVHGKARRRLPRAP 121 +PP + G L +PI A + GP V +GRA + V + +RRL +AP Sbjct: 754 SPPSMTGSNTLGKPGVVPIAAAPPKSGPPAGVA----QGRAGVQVAPRRQRRLEKAP 806
>GP179_HUMAN (Q6PRD1) Probable G-protein coupled receptor 179 precursor (Probable| G-protein coupled receptor 158-like 1) Length = 2367 Score = 28.5 bits (62), Expect = 7.9 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = -1 Query: 210 PAGAVRGLVHRGRAALAVHGKARRRLPRAPWRHQ 109 P+ A V + +H +ARRRLP P RHQ Sbjct: 903 PSPAKSSSVDSSHTSGRLHEEARRRLPHPPIRHQ 936
>ITA7_HUMAN (Q13683) Integrin alpha-7 precursor [Contains: Integrin alpha-7 heavy| chain; Integrin alpha-7 light chain] Length = 1181 Score = 28.5 bits (62), Expect = 7.9 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +1 Query: 202 PRWTILSGGEGDGEKVSSSPQPRRCHVAAHRGRRRSQE 315 P L GG+G G+K SP+P H+ RR +E Sbjct: 922 PMQVELEGGQGPGQKGLCSPRPNILHLDVDSRDRRRRE 959
>PPM1F_RAT (Q9WVR7) Ca(2+)/calmodulin-dependent protein kinase phosphatase (EC| 3.1.3.16) (CaM-kinase phosphatase) (CaMKPase) (Partner of PIX 2) (Protein phosphatase 1F) Length = 450 Score = 28.5 bits (62), Expect = 7.9 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Frame = +1 Query: 208 WTILSGGEGDGEKVSSSPQPRRCHVAAH--RGRRRSQEDRAVCALGIRIPFLEQM--RIK 375 W + S + + +PQ R+ V+ H R RR EDR V +P + Sbjct: 130 WEVCSQWQKRVPLTAQAPQ-RKWLVSIHAIRNTRRKMEDRHVS-----LPAFNHLFGLSD 183 Query: 376 EVDVGVMAIFDGHNGDEASEMAS 444 V A+FDGH G +A+ AS Sbjct: 184 SVHRAYFAVFDGHGGVDAARYAS 206
>PIGS_HUMAN (Q96S52) GPI transamidase component PIG-S| (Phosphatidylinositol-glycan biosynthesis, class S protein) Length = 554 Score = 28.5 bits (62), Expect = 7.9 Identities = 21/79 (26%), Positives = 33/79 (41%) Frame = +1 Query: 46 SPMSLQLSGRRTVLFLILIELLVPPRCAGESATCLAVYREGGAPAVYQSAHCPRWTILSG 225 +P+ +L L+ +L LL P A L + + GAP + H PRW + Sbjct: 304 NPVESRLGSSAASLYPVLNFLLYVPELAHSP---LYIQDKDGAPVATNAFHSPRWGGIMV 360 Query: 226 GEGDGEKVSSSPQPRRCHV 282 D + ++S P R V Sbjct: 361 YNVDSKTYNASVLPVRVEV 379 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,676,682 Number of Sequences: 219361 Number of extensions: 1009800 Number of successful extensions: 3700 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3579 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3698 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)