ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl01e03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191457.1| Oryza sativa (japonica cultivar-group), predic... 184 2e-43
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 184 2e-43
3dbj|AP003265.4| Oryza sativa (japonica cultivar-group) genomic D... 184 2e-43
4dbj|AK120210.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
5dbj|AK102916.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
6dbj|AK102215.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 4e-41
7gb|AC158631.6| Mus musculus 10 BAC RP23-424I1 (Roswell Park Canc... 42 1.5
8gb|AC168056.3| Mus musculus BAC clone RP24-189B1 from chromosome... 40 6.0
9gb|AC163684.5| Mus musculus BAC clone RP23-8N10 from chromosome ... 40 6.0
10gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 6.0
11ref|XM_583126.2| PREDICTED: Bos taurus similar to Sin3 histone d... 40 6.0
12ref|XM_880373.1| PREDICTED: Bos taurus similar to Sin3 histone d... 40 6.0
13ref|XM_846139.1| PREDICTED: Canis familiaris similar to 14-3-3 p... 40 6.0
14gb|AC112158.4| Mus musculus BAC clone RP24-116K14 from chromosom... 40 6.0
15gb|AC154577.2| Mus musculus BAC clone RP23-375G9 from chromosome... 40 6.0
16emb|AL513384.1|STYPPHCM2 Salmonella enterica subsp. enterica ser... 40 6.0
17dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete... 40 6.0
18dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.0
19gb|AC155307.2| Mus musculus BAC clone RP24-147F17 from 15, compl... 40 6.0 
>ref|NM_191457.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2523

 Score =  184 bits (93), Expect = 2e-43
 Identities = 162/185 (87%)
 Strand = Plus / Plus

                                                                       
Query: 264 ttgctcgagtggatcttgatgcttctgctgttcatcgatgcagtttactccttcctcatc 323
           ||||||||||||||||||||||| ||||||||||||||||| ||||| | |||| |  ||
Sbjct: 55  ttgctcgagtggatcttgatgctgctgctgttcatcgatgcggtttattgcttcttggtc 114

                                                                       
Query: 324 acccgatttgcccgtctctgcaaactaccggtaccttgtccgttctgctcgaggctagat 383
           ||| |||||||||| ||||||| | |||||| ||| || || |||||||| |||||||| 
Sbjct: 115 accagatttgcccgcctctgcagattaccggcaccgtgccctttctgctcaaggctagac 174

                                                                       
Query: 384 catgtcctcgggaacgaggagccgtgcttctacagggaattgatctgcaaaactcacaag 443
           |||||||| || || ||| | || ||||||||||||||||||||||||||||||||||||
Sbjct: 175 catgtcctgggtaatgagaaaccatgcttctacagggaattgatctgcaaaactcacaag 234

                
Query: 444 tcaga 448
           |||||
Sbjct: 235 tcaga 239
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  184 bits (93), Expect = 2e-43
 Identities = 162/185 (87%)
 Strand = Plus / Plus

                                                                            
Query: 264      ttgctcgagtggatcttgatgcttctgctgttcatcgatgcagtttactccttcctcatc 323
                ||||||||||||||||||||||| ||||||||||||||||| ||||| | |||| |  ||
Sbjct: 32763249 ttgctcgagtggatcttgatgctgctgctgttcatcgatgcggtttattgcttcttggtc 32763308

                                                                            
Query: 324      acccgatttgcccgtctctgcaaactaccggtaccttgtccgttctgctcgaggctagat 383
                ||| |||||||||| ||||||| | |||||| ||| || || |||||||| |||||||| 
Sbjct: 32763309 accagatttgcccgcctctgcagattaccggcaccgtgccctttctgctcaaggctagac 32763368

                                                                            
Query: 384      catgtcctcgggaacgaggagccgtgcttctacagggaattgatctgcaaaactcacaag 443
                |||||||| || || ||| | || ||||||||||||||||||||||||||||||||||||
Sbjct: 32763369 catgtcctgggtaatgagaaaccatgcttctacagggaattgatctgcaaaactcacaag 32763428

                     
Query: 444      tcaga 448
                |||||
Sbjct: 32763429 tcaga 32763433
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>dbj|AP003265.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0490D09
          Length = 154430

 Score =  184 bits (93), Expect = 2e-43
 Identities = 162/185 (87%)
 Strand = Plus / Plus

                                                                          
Query: 264    ttgctcgagtggatcttgatgcttctgctgttcatcgatgcagtttactccttcctcatc 323
              ||||||||||||||||||||||| ||||||||||||||||| ||||| | |||| |  ||
Sbjct: 126044 ttgctcgagtggatcttgatgctgctgctgttcatcgatgcggtttattgcttcttggtc 126103

                                                                          
Query: 324    acccgatttgcccgtctctgcaaactaccggtaccttgtccgttctgctcgaggctagat 383
              ||| |||||||||| ||||||| | |||||| ||| || || |||||||| |||||||| 
Sbjct: 126104 accagatttgcccgcctctgcagattaccggcaccgtgccctttctgctcaaggctagac 126163

                                                                          
Query: 384    catgtcctcgggaacgaggagccgtgcttctacagggaattgatctgcaaaactcacaag 443
              |||||||| || || ||| | || ||||||||||||||||||||||||||||||||||||
Sbjct: 126164 catgtcctgggtaatgagaaaccatgcttctacagggaattgatctgcaaaactcacaag 126223

                   
Query: 444    tcaga 448
              |||||
Sbjct: 126224 tcaga 126228
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>dbj|AK120210.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013038N24, full
           insert sequence
          Length = 3379

 Score =  184 bits (93), Expect = 2e-43
 Identities = 162/185 (87%)
 Strand = Plus / Plus

                                                                       
Query: 264 ttgctcgagtggatcttgatgcttctgctgttcatcgatgcagtttactccttcctcatc 323
           ||||||||||||||||||||||| ||||||||||||||||| ||||| | |||| |  ||
Sbjct: 497 ttgctcgagtggatcttgatgctgctgctgttcatcgatgcggtttattgcttcttggtc 556

                                                                       
Query: 324 acccgatttgcccgtctctgcaaactaccggtaccttgtccgttctgctcgaggctagat 383
           ||| |||||||||| ||||||| | |||||| ||| || || |||||||| |||||||| 
Sbjct: 557 accagatttgcccgcctctgcagattaccggcaccgtgccctttctgctcaaggctagac 616

                                                                       
Query: 384 catgtcctcgggaacgaggagccgtgcttctacagggaattgatctgcaaaactcacaag 443
           |||||||| || || ||| | || ||||||||||||||||||||||||||||||||||||
Sbjct: 617 catgtcctgggtaatgagaaaccatgcttctacagggaattgatctgcaaaactcacaag 676

                
Query: 444 tcaga 448
           |||||
Sbjct: 677 tcaga 681
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>dbj|AK102916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114A07, full
           insert sequence
          Length = 3137

 Score =  184 bits (93), Expect = 2e-43
 Identities = 162/185 (87%)
 Strand = Plus / Plus

                                                                       
Query: 264 ttgctcgagtggatcttgatgcttctgctgttcatcgatgcagtttactccttcctcatc 323
           ||||||||||||||||||||||| ||||||||||||||||| ||||| | |||| |  ||
Sbjct: 334 ttgctcgagtggatcttgatgctgctgctgttcatcgatgcggtttattgcttcttggtc 393

                                                                       
Query: 324 acccgatttgcccgtctctgcaaactaccggtaccttgtccgttctgctcgaggctagat 383
           ||| |||||||||| ||||||| | |||||| ||| || || |||||||| |||||||| 
Sbjct: 394 accagatttgcccgcctctgcagattaccggcaccgtgccctttctgctcaaggctagac 453

                                                                       
Query: 384 catgtcctcgggaacgaggagccgtgcttctacagggaattgatctgcaaaactcacaag 443
           |||||||| || || ||| | || ||||||||||||||||||||||||||||||||||||
Sbjct: 454 catgtcctgggtaatgagaaaccatgcttctacagggaattgatctgcaaaactcacaag 513

                
Query: 444 tcaga 448
           |||||
Sbjct: 514 tcaga 518
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>dbj|AK102215.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087K21, full
           insert sequence
          Length = 3165

 Score =  176 bits (89), Expect = 4e-41
 Identities = 161/185 (87%)
 Strand = Plus / Plus

                                                                       
Query: 264 ttgctcgagtggatcttgatgcttctgctgttcatcgatgcagtttactccttcctcatc 323
           ||||||||||||||||||||||| ||||||||||||||||| ||||| | |||| |  ||
Sbjct: 267 ttgctcgagtggatcttgatgctgctgctgttcatcgatgcggtttattgcttcttggtc 326

                                                                       
Query: 324 acccgatttgcccgtctctgcaaactaccggtaccttgtccgttctgctcgaggctagat 383
           ||| |||||||||| ||||||| | | |||| ||| || || |||||||| |||||||| 
Sbjct: 327 accagatttgcccgcctctgcagattgccggcaccgtgccctttctgctcaaggctagac 386

                                                                       
Query: 384 catgtcctcgggaacgaggagccgtgcttctacagggaattgatctgcaaaactcacaag 443
           |||||||| || || ||| | || ||||||||||||||||||||||||||||||||||||
Sbjct: 387 catgtcctgggtaatgagaaaccatgcttctacagggaattgatctgcaaaactcacaag 446

                
Query: 444 tcaga 448
           |||||
Sbjct: 447 tcaga 451
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>gb|AC158631.6| Mus musculus 10 BAC RP23-424I1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 206425

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 10     cctcctcctcctgacgctgct 30
              |||||||||||||||||||||
Sbjct: 193789 cctcctcctcctgacgctgct 193809
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>gb|AC168056.3| Mus musculus BAC clone RP24-189B1 from chromosome 13, complete sequence
          Length = 179458

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    aatgggaacaaggatgacag 228
              ||||||||||||||||||||
Sbjct: 134198 aatgggaacaaggatgacag 134217
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>gb|AC163684.5| Mus musculus BAC clone RP23-8N10 from chromosome 13, complete sequence
          Length = 234717

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   aatgggaacaaggatgacag 228
             ||||||||||||||||||||
Sbjct: 72726 aatgggaacaaggatgacag 72745
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     cctcctcctcctgacgctgc 29
              ||||||||||||||||||||
Sbjct: 263974 cctcctcctcctgacgctgc 263993
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>ref|XM_583126.2| PREDICTED: Bos taurus similar to Sin3 histone deacetylase
           corepressor complex component SDS3, transcript variant 1
           (LOC506646), mRNA
          Length = 1131

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 52  ttttggcgcctgctccggcc 71
           ||||||||||||||||||||
Sbjct: 137 ttttggcgcctgctccggcc 156
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>ref|XM_880373.1| PREDICTED: Bos taurus similar to Sin3 histone deacetylase
           corepressor complex component SDS3, transcript variant 2
           (LOC506646), mRNA
          Length = 1161

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 52  ttttggcgcctgctccggcc 71
           ||||||||||||||||||||
Sbjct: 137 ttttggcgcctgctccggcc 156
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>ref|XM_846139.1| PREDICTED: Canis familiaris similar to 14-3-3 protein sigma
          (Stratifin) (Epithelial cell marker protein 1)
          (LOC608966), mRNA
          Length = 972

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 10 cctcctcctcctgacgctgc 29
          ||||||||||||||||||||
Sbjct: 28 cctcctcctcctgacgctgc 9
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>gb|AC112158.4| Mus musculus BAC clone RP24-116K14 from chromosome 15, complete
             sequence
          Length = 175171

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   aattctgtcagacaatggga 215
             ||||||||||||||||||||
Sbjct: 74393 aattctgtcagacaatggga 74412
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>gb|AC154577.2| Mus musculus BAC clone RP23-375G9 from chromosome 17, complete sequence
          Length = 189549

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   gaattgatctgcaaaactca 439
             ||||||||||||||||||||
Sbjct: 44659 gaattgatctgcaaaactca 44678
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>emb|AL513384.1|STYPPHCM2 Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid
             pHCM2
          Length = 106516

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   gatgcttctgctgttcatcg 300
             ||||||||||||||||||||
Sbjct: 36320 gatgcttctgctgttcatcg 36301
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>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 411     ttctacagggaattgatctgcaaa 434
               |||| |||||||||||||||||||
Sbjct: 1923597 ttctgcagggaattgatctgcaaa 1923574
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 372     tcgaggctagatcatgtcct 391
               ||||||||||||||||||||
Sbjct: 5922260 tcgaggctagatcatgtcct 5922241
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>gb|AC155307.2| Mus musculus BAC clone RP24-147F17 from 15, complete sequence
          Length = 190527

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    aattctgtcagacaatggga 215
              ||||||||||||||||||||
Sbjct: 155352 aattctgtcagacaatggga 155333


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,541,512
Number of Sequences: 3902068
Number of extensions: 3541512
Number of successful extensions: 60989
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60923
Number of HSP's gapped (non-prelim): 66
length of query: 448
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 426
effective length of database: 17,147,199,772
effective search space: 7304707102872
effective search space used: 7304707102872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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