ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl01e02 |
|---|---|
| Clone Library Name | barley_pub |
>CU059_HUMAN (P57076) Protein C21orf59| Length = 290 Score = 32.3 bits (72), Expect = 0.61 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +1 Query: 262 VGRRAGDKPGLRMKKILHKDGKESTAVVQKLQQE 363 +GRR G P +MK++L K +E+ A++ K Q E Sbjct: 96 IGRRNGQAPNEKMKQVLKKTIEEAKAIISKKQVE 129
>CAC1E_HUMAN (Q15878) Voltage-dependent R-type calcium channel alpha-1E subunit| (Voltage-gated calcium channel alpha subunit Cav2.3) (Calcium channel, L type, alpha-1 polypeptide, isoform 6) (Brain calcium channel II) (BII) Length = 2312 Score = 31.2 bits (69), Expect = 1.3 Identities = 19/55 (34%), Positives = 26/55 (47%) Frame = +3 Query: 204 EHS*RRELHEGSWQGAGEACREKSRR*AWS*NEEDFTQGRKRINCSSSEATTRDK 368 E RR H W+ RE+ RR S E+ +Q RK + SS EA R++ Sbjct: 747 ERDRRRRHHMSMWEPRSSHLRERRRRHHMSVWEQRTSQLRKHMQMSSQEALNREE 801
>ANT_BPP1 (P19655) Antirepressor protein 1 (ant1) (Repressor bypass protein| B) (rebB) [Contains: Antirepressor protein 2 (ant2) (Repressor bypass protein A) (rebA)] Length = 322 Score = 30.8 bits (68), Expect = 1.8 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%) Frame = +1 Query: 172 VTQNKYVPDIMSIVEGESYMRDPGRELAKPVGRRAG---DKPGLRMKKILHKDGKESTAV 342 V NK++ I+ +EGE Y + AK G RAG + + K+ L +ES AV Sbjct: 137 VRNNKFIEKILDELEGEFYTKS-----AKSHGTRAGRSFEVITMTYKQALRVAARESKAV 191 Query: 343 VQKLQQEIREVVRDN 387 + L ++ E+ + N Sbjct: 192 RRSLIDKLEELQQAN 206
>C71BM_ARATH (Q9LTM1) Cytochrome P450 71B22 (EC 1.14.-.-)| Length = 500 Score = 30.8 bits (68), Expect = 1.8 Identities = 14/24 (58%), Positives = 19/24 (79%) Frame = +1 Query: 340 VVQKLQQEIREVVRDNGISILEKD 411 V++KLQQEIRE++ DN I E+D Sbjct: 323 VMKKLQQEIREILGDNKEKITEQD 346
>ATXR3_ARATH (O23372) Probable histone-lysine N-methyltransferase ATXR3 (EC| 2.1.1.43) (Trithorax-related protein 3) (TRX-related protein 3) (Protein SET DOMAIN GROUP 2) Length = 2351 Score = 30.4 bits (67), Expect = 2.3 Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 5/94 (5%) Frame = +1 Query: 157 DTSKIVTQNKYVPDIMSIVEGESYMRDPGRELAKPVG--RRAGDKPGLRMK---KILHKD 321 D S+ + Y+P+ M + + R+ RE+++ G R + G ++ K + Sbjct: 451 DRSRPSDRRDYIPNFMEDTQSDRNRRNGHREISRKSGVRERRDCQTGTELEIKHKYKESN 510 Query: 322 GKESTAVVQKLQQEIREVVRDNGISILEKDNAFD 423 GKEST+ ++LQ + ++ +N + ++EK++ D Sbjct: 511 GKESTSSSKELQG--KNILYNNSL-LVEKNSVCD 541
>POLG_JAEVJ (P32886) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3432 Score = 30.4 bits (67), Expect = 2.3 Identities = 22/76 (28%), Positives = 37/76 (48%) Frame = +1 Query: 196 DIMSIVEGESYMRDPGRELAKPVGRRAGDKPGLRMKKILHKDGKESTAVVQKLQQEIREV 375 D+ + V+ Y+ + R LAK V + HK+G V +L+ ++ E Sbjct: 818 DVEAWVDRYKYLPETPRSLAKIVHKA-------------HKEGVCGVRSVTRLEHQMWEA 864 Query: 376 VRDNGISILEKDNAFD 423 VRD +++L K+NA D Sbjct: 865 VRDE-LNVLLKENAVD 879
>POLG_JAEV5 (P19110) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3432 Score = 30.4 bits (67), Expect = 2.3 Identities = 22/76 (28%), Positives = 37/76 (48%) Frame = +1 Query: 196 DIMSIVEGESYMRDPGRELAKPVGRRAGDKPGLRMKKILHKDGKESTAVVQKLQQEIREV 375 D+ + V+ Y+ + R LAK V + HK+G V +L+ ++ E Sbjct: 818 DVEAWVDRYKYLPETPRSLAKIVHKA-------------HKEGVCGVRSVTRLEHQMWEA 864 Query: 376 VRDNGISILEKDNAFD 423 VRD +++L K+NA D Sbjct: 865 VRDE-LNVLLKENAVD 879
>POLG_JAEV1 (P27395) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3432 Score = 30.4 bits (67), Expect = 2.3 Identities = 22/76 (28%), Positives = 37/76 (48%) Frame = +1 Query: 196 DIMSIVEGESYMRDPGRELAKPVGRRAGDKPGLRMKKILHKDGKESTAVVQKLQQEIREV 375 D+ + V+ Y+ + R LAK V + HK+G V +L+ ++ E Sbjct: 818 DVEAWVDRYKYLPETPRSLAKIVHKA-------------HKEGVCGVRSVTRLEHQMWEA 864 Query: 376 VRDNGISILEKDNAFD 423 VRD +++L K+NA D Sbjct: 865 VRDE-LNVLLKENAVD 879
>POLG_JAEVN (P14403) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 1440 Score = 30.4 bits (67), Expect = 2.3 Identities = 22/76 (28%), Positives = 37/76 (48%) Frame = +1 Query: 196 DIMSIVEGESYMRDPGRELAKPVGRRAGDKPGLRMKKILHKDGKESTAVVQKLQQEIREV 375 D+ + V+ Y+ + R LAK V + HK+G V +L+ ++ E Sbjct: 746 DVEAWVDRYKYLPETPRSLAKIVHKA-------------HKEGVCGVRSVTRLEHQMWEA 792 Query: 376 VRDNGISILEKDNAFD 423 VRD +++L K+NA D Sbjct: 793 VRDE-LNVLLKENAVD 807
>C71BL_ARATH (Q9LTM2) Cytochrome P450 71B21 (EC 1.14.-.-)| Length = 499 Score = 30.0 bits (66), Expect = 3.0 Identities = 14/24 (58%), Positives = 19/24 (79%) Frame = +1 Query: 340 VVQKLQQEIREVVRDNGISILEKD 411 V++KLQQEIRE++ DN I E+D Sbjct: 323 VMKKLQQEIRELLGDNKEKITEQD 346
>PMT2_SCHPO (O42832) AdoMet-dependent rRNA methyltransferase pmt2 (EC 2.1.1.-)| (2'-O-ribose RNA methyltransferase) (S-adenosyl-L-methionine-dependent methyltransferase) Length = 802 Score = 29.3 bits (64), Expect = 5.1 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +1 Query: 22 QSEISHPAKKARLEVQDQEMHLIANSGVSSSDCHATSIATNFIASDTSKIVT 177 +S++ + KKAR ++ D+E + I N G S D TNF D ++ T Sbjct: 472 ESDVKYRVKKARGDLDDEEWNGIDN-GTESDDSQIAE--TNFATPDKDRLTT 520
>NLTP_BOVIN (P07857) Nonspecific lipid-transfer protein, mitochondrial| precursor (EC 2.3.1.176) (Propanoyl-CoA C-acyltransferase) (NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol carrier protein X) (SCP-X) (SCP-chi) (SCPX) Length = 543 Score = 29.3 bits (64), Expect = 5.1 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = +1 Query: 172 VTQNKYVPDIMSIVEGESYMRDPGRELAKPVGRRAGDKPGLRMKKI 309 + + V D+ S EG+S ++ G +++K RR +K GLR I Sbjct: 253 ILAQEMVTDMPSSFEGKSIIKMVGFDMSKEAARRCYEKSGLRPSDI 298
>CAC1E_RABIT (Q02343) Voltage-dependent R-type calcium channel alpha-1E subunit| (Voltage-gated calcium channel alpha subunit Cav2.3) (Calcium channel, L type, alpha-1 polypeptide, isoform 6) (Brain calcium channel II) (BII) Length = 2259 Score = 28.9 bits (63), Expect = 6.7 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +3 Query: 204 EHS*RRELHEGSWQGAGEACREKSRR*AWS*NEEDFTQGRKRINCSSSEATTRDK 368 E RR H W+ RE+ RR S E+ +Q R+ + SS EA +++ Sbjct: 747 ERDRRRRHHMSMWEPRSSHLRERRRRHHMSVWEQRTSQLRRHMQMSSQEALNKEE 801
>Y2097_ARCFU (O28183) UPF0272 protein AF2097| Length = 395 Score = 28.9 bits (63), Expect = 6.7 Identities = 14/60 (23%), Positives = 30/60 (50%) Frame = +1 Query: 190 VPDIMSIVEGESYMRDPGRELAKPVGRRAGDKPGLRMKKILHKDGKESTAVVQKLQQEIR 369 VP+++ ++ GE+ D + V +G+ G MKK+L +D ++ +++R Sbjct: 225 VPNVLRLILGETAFHDSIVVIETSVDDLSGEMIGYAMKKLLERDDVLDAVIIPAYGKKMR 284
>SRPK2_MOUSE (O54781) Serine/threonine-protein kinase SRPK2 (EC 2.7.11.1)| (Serine/arginine-rich protein-specific kinase 2) (SR-protein-specific kinase 2) (SFRS protein kinase 2) Length = 681 Score = 28.9 bits (63), Expect = 6.7 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = +1 Query: 256 KPVGRRAGDKPGLRMKKILHKDGKESTAVVQKLQQEIREVVRDNGISILEKD 411 KP+G+ + +K KK L K K +++K QEI E+ R+ ILE++ Sbjct: 257 KPIGKISKNK-----KKKLKKKQKRQAELLEKRLQEIEELEREAERKILEEN 303
>Y2062_LACPL (Q88VI7) UPF0291 protein lp_2062| Length = 79 Score = 28.9 bits (63), Expect = 6.7 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = +1 Query: 271 RAGDKPGLRMKKILHKDGKESTAVVQKLQQEIREVVRDNGI 393 RAG + + M ++ KDGKE T +++R+V RD G+ Sbjct: 42 RAGFRQQVEMLQVYDKDGKEVT------PEKVRQVQRDRGL 76
>CU16D_LIMPO (P83352) Cuticle protein 16 isoform D (LpCP16d) (Fragment)| Length = 59 Score = 28.9 bits (63), Expect = 6.7 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = +1 Query: 319 DGKESTAVVQKLQQEIREVVRDNGISILEKDNAFDEKLLTAFRAA 453 +GK A +Q LQQE + + LEK A + K+ RAA Sbjct: 9 EGKNDPAFLQNLQQEALNYINQQQVPNLEKHKAEELKVAAKERAA 53
>CAC1E_RAT (Q07652) Voltage-dependent R-type calcium channel alpha-1E subunit| (Voltage-gated calcium channel alpha subunit Cav2.3) (Calcium channel, L type, alpha-1 polypeptide, isoform 6) (RBE-II) (RBE2) (Brain calcium channel II) (BII) Length = 2222 Score = 28.9 bits (63), Expect = 6.7 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +3 Query: 204 EHS*RRELHEGSWQGAGEACREKSRR*AWS*NEEDFTQGRKRINCSSSEATTRDK 368 E RR H W+ RE+ RR S E+ +Q R+ + SS EA +++ Sbjct: 698 ERDRRRRHHMSMWEPRSSHLRERRRRHHMSVWEQRTSQLRRHMQMSSQEALNKEE 752
>IGA1B_STRPN (Q54875) Immunoglobulin A1 protease precursor (EC 3.4.24.13) (IgA1| protease) (IgA-specific zinc metalloproteinase) Length = 1927 Score = 28.9 bits (63), Expect = 6.7 Identities = 20/52 (38%), Positives = 26/52 (50%) Frame = +1 Query: 289 GLRMKKILHKDGKESTAVVQKLQQEIREVVRDNGISILEKDNAFDEKLLTAF 444 G + KIL+K TA V+KLQQEI +DN L K + T+F Sbjct: 697 GRKNDKILYK----ITAKVEKLQQEIESRYKDNFTFYLAKKGTEETTNFTSF 744
>CAC1E_MOUSE (Q61290) Voltage-dependent R-type calcium channel alpha-1E subunit| (Voltage-gated calcium channel alpha subunit Cav2.3) (Calcium channel, L type, alpha-1 polypeptide, isoform 6) (Brain calcium channel II) (BII) Length = 2272 Score = 28.9 bits (63), Expect = 6.7 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +3 Query: 204 EHS*RRELHEGSWQGAGEACREKSRR*AWS*NEEDFTQGRKRINCSSSEATTRDK 368 E RR H W+ RE+ RR S E+ +Q R+ + SS EA +++ Sbjct: 748 ERDRRRRHHMSMWEPRSSHLRERRRRHHMSVWEQRTSQLRRHMQMSSQEALNKEE 802
>NU4M_PHOSU (O21515) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) (Fragment) Length = 208 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/51 (25%), Positives = 24/51 (47%) Frame = -3 Query: 176 VTIFDVSLAIKLVAIEVAWQSDEETPEFAMRCIS*SCTSSLAFFAGWLISL 24 + + S I ++A+ WQ ++ T F+ + S +S L WL+ L Sbjct: 25 INVTSYSFVINMIALVTLWQVNDITTNFSTMFSTDSLSSPLTMLTIWLLPL 75
>NU4M_MICPE (O21521) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) (Fragment) Length = 208 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/51 (25%), Positives = 25/51 (49%) Frame = -3 Query: 176 VTIFDVSLAIKLVAIEVAWQSDEETPEFAMRCIS*SCTSSLAFFAGWLISL 24 + + SL I L++I + WQ++E F+ + ++ L WL+ L Sbjct: 25 INVTTYSLLINLISINLLWQNNENNLSFSTMFSADPLSAPLLVLTTWLLPL 75
>RP1_CANFA (Q8MJ04) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein| homolog) Length = 2141 Score = 28.5 bits (62), Expect = 8.7 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 4/84 (4%) Frame = +1 Query: 19 LQSEISHPA----KKARLEVQDQEMHLIANSGVSSSDCHATSIATNFIASDTSKIVTQNK 186 LQ+ H A K A + +D+ + N+G + + H +S N A +++K +T+N Sbjct: 919 LQNTNPHSALQSRKSAPIYKKDRSVVSCNNNGFAGTKSHTSSGEGNNFARESNKYITKNA 978 Query: 187 YVPDIMSIVEGESYMRDPGRELAK 258 + + + G+ + + EL+K Sbjct: 979 SLTENLGKKVGKFFDKVNSEELSK 1002
>CEF1_YARLI (Q6C8F5) Pre-mRNA-splicing factor CEF1| Length = 719 Score = 28.5 bits (62), Expect = 8.7 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 5/71 (7%) Frame = +1 Query: 4 LSDMELQSEISHPAKKARLE--VQDQEMHLIANSGVSSSDCH---ATSIATNFIASDTSK 168 L+ ++LQ +IS K E +QDQEM I G H A +A++ K Sbjct: 283 LAQLDLQDQISKRRKLNLPEPQIQDQEMEEIVKLGAQGEALHKRYADGVASSLSGDYDDK 342 Query: 169 IVTQNKYVPDI 201 IV + P I Sbjct: 343 IVDDSIRTPQI 353
>C71AC_ARATH (O49340) Cytochrome P450 71A12 (EC 1.14.-.-)| Length = 497 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = +1 Query: 340 VVQKLQQEIREVVRDNGISILEKD 411 V++KLQ EIR +R +G I EKD Sbjct: 320 VMKKLQDEIRSTIRPHGSYIKEKD 343
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 28.5 bits (62), Expect = 8.7 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +1 Query: 283 KPGLRMKKILHKDGKESTAVVQKLQQEIREVVRDNGISILEKD 411 K GLR+K+ LH + V+K+Q+ ++R + I++KD Sbjct: 353 KEGLRLKQALHDQLFQKIPFVRKIQENSEGLLRYDTPDIIKKD 395 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.133 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,523,557 Number of Sequences: 219361 Number of extensions: 1062772 Number of successful extensions: 4016 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3328 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4015 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
