ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl01d08 |
|---|---|
| Clone Library Name | barley_pub |
>XKR6_RAT (Q5GH57) XK-related protein 6| Length = 638 Score = 32.3 bits (72), Expect = 0.29 Identities = 17/33 (51%), Positives = 20/33 (60%) Frame = +3 Query: 156 LSGDIIRNSSAAAKGGRQRRRPRDAAGSNPPPP 254 L G R S+AAA GG Q +P AAG +PP P Sbjct: 75 LLGKKPRRSAAAADGGDQPLQPPGAAGRHPPTP 107
>EPS8_HUMAN (Q12929) Epidermal growth factor receptor kinase substrate 8| Length = 822 Score = 32.3 bits (72), Expect = 0.29 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 9/63 (14%) Frame = +3 Query: 150 AQLSGDIIRNSSAAAKGGRQRRRP------RDAAGSNPPPPRR---ADAGSSSLPDLSSI 302 A L + I ++ + +KGG+Q+RRP +A S PPPPR A G+ + D+ S Sbjct: 173 ANLISEDIESAISDSKGGKQKRRPDALRMISNADPSIPPPPRAPAPAPPGTVTQVDVRSR 232 Query: 303 YAA 311 AA Sbjct: 233 VAA 235
>EPS8_MOUSE (Q08509) Epidermal growth factor receptor kinase substrate 8| Length = 821 Score = 31.2 bits (69), Expect = 0.65 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 9/63 (14%) Frame = +3 Query: 150 AQLSGDIIRNSSAAAKGGRQRRRP---RDAAGSNP--PPPRRADA----GSSSLPDLSSI 302 A L + I ++ + +KGG+Q+RRP R A ++P PPP RA A G+ + D+ S Sbjct: 173 ANLISEDIESAISDSKGGKQKRRPEALRMIAKADPGIPPPPRAPAPVPPGTVTQVDVRSR 232 Query: 303 YAA 311 AA Sbjct: 233 VAA 235
>IF2_GLUOX (Q5FQM3) Translation initiation factor IF-2| Length = 917 Score = 30.8 bits (68), Expect = 0.85 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 3/34 (8%) Frame = +3 Query: 183 SAAAKGGRQRRRP---RDAAGSNPPPPRRADAGS 275 S AA GG RRP R G+ P PPRR A S Sbjct: 245 SGAAAGGDDERRPAPRRSGPGAPPAPPRRPSAPS 278
>EPS8_PONPY (Q5R4H4) Epidermal growth factor receptor kinase substrate 8| Length = 822 Score = 30.8 bits (68), Expect = 0.85 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 9/63 (14%) Frame = +3 Query: 150 AQLSGDIIRNSSAAAKGGRQRRRP------RDAAGSNPPPPRR---ADAGSSSLPDLSSI 302 A L + I ++ + +KGG+Q+RRP +A PPPPR A G+ + D+ S Sbjct: 173 ANLISEDIESAISDSKGGKQKRRPDALRMISNADPGIPPPPRAPAPAPPGTVTQVDVRSR 232 Query: 303 YAA 311 AA Sbjct: 233 VAA 235
>ATIN_HHV1F (P04486) Alpha trans-inducing protein (Vmw65) (ICP25) (VP16| protein) (Alpha-TIF) Length = 479 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +3 Query: 225 DAAGSNPPPPRRADAGSSSLPDLSSIYAAGGVAR 326 DA G++PPPPR A G + P +YA G +++ Sbjct: 2 DADGASPPPPRPA-GGPKNTPAAPPLYATGRLSQ 34
>VE2_HPV5B (P26545) Regulatory protein E2| Length = 514 Score = 30.0 bits (66), Expect = 1.5 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = +3 Query: 174 RNSSAAAKGGRQRRRPRDAAGSNPPPPRRADAGSSSLPDLS 296 R S ++GGR RRR R ++ S+ P +R+ GS+ L +S Sbjct: 363 RGSRGGSRGGRLRRRGRSSSSSS-PAHKRSRGGSAKLRGVS 402
>VE2_HPV05 (P06921) Regulatory protein E2| Length = 514 Score = 30.0 bits (66), Expect = 1.5 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = +3 Query: 174 RNSSAAAKGGRQRRRPRDAAGSNPPPPRRADAGSSSLPDLS 296 R S ++GGR RRR R ++ S+ P +R+ GS+ L +S Sbjct: 363 RGSRGGSRGGRGRRRGRSSSSSS-PAHKRSRGGSAKLRGVS 402
>SCNAA_RAT (P37089) Amiloride-sensitive sodium channel alpha-subunit| (Epithelial Na+ channel alpha subunit) (Alpha ENaC) (Nonvoltage-gated sodium channel 1 alpha subunit) (SCNEA) (Alpha NaCH) Length = 698 Score = 30.0 bits (66), Expect = 1.5 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 12/50 (24%) Frame = +3 Query: 177 NSSAAAKGGRQRRRPRDAAGS---------NPPPP---RRADAGSSSLPD 290 NSS + G +RR RD G+ PPPP R A +GSSS+ D Sbjct: 190 NSSYTRQAGARRRSSRDLLGAFPHPLQRLRTPPPPYSGRTARSGSSSVRD 239
>HASP_HUMAN (Q8TF76) Serine/threonine-protein kinase Haspin (EC 2.7.11.1)| (Haploid germ cell-specific nuclear protein kinase) (H-Haspin) (Germ cell-specific gene 2 protein) Length = 798 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/45 (42%), Positives = 22/45 (48%) Frame = +3 Query: 162 GDIIRNSSAAAKGGRQRRRPRDAAGSNPPPPRRADAGSSSLPDLS 296 G + + AA G RQRR R+AA PP RR SS D S Sbjct: 9 GSRLFRTYGAADGRRQRRPGREAAQWFPPQDRRRFFNSSGSSDAS 53
>VGLI_HHV2H (P13291) Glycoprotein I| Length = 372 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/42 (35%), Positives = 25/42 (59%) Frame = +3 Query: 177 NSSAAAKGGRQRRRPRDAAGSNPPPPRRADAGSSSLPDLSSI 302 N +A A+ G + R + + PP PRR + S+++P L+SI Sbjct: 307 NEAAMARLGAELR----SHPNTPPKPRRRSSSSTTMPSLTSI 344
>VGLI_HHV23 (P06764) Glycoprotein I| Length = 372 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/42 (35%), Positives = 25/42 (59%) Frame = +3 Query: 177 NSSAAAKGGRQRRRPRDAAGSNPPPPRRADAGSSSLPDLSSI 302 N +A A+ G + R + + PP PRR + S+++P L+SI Sbjct: 307 NEAAMARLGAELR----SHPNTPPKPRRRSSSSTTMPSLTSI 344
>SPAG1_HUMAN (Q07617) Sperm-associated antigen 1 (Infertility-related sperm| protein Spag-1) (HSD-3.8) Length = 926 Score = 28.9 bits (63), Expect = 3.2 Identities = 20/60 (33%), Positives = 28/60 (46%) Frame = +3 Query: 162 GDIIRNSSAAAKGGRQRRRPRDAAGSNPPPPRRADAGSSSLPDLSSIYAAGGVARGYPVG 341 G+I + + A+GG++ R G P A A S S+ AAGG A G+P G Sbjct: 383 GNIQKKLTGKAEGGKRPARGAPQRGQTP----EAGADKRSPRRASAAAAAGGGATGHPGG 438
>IE18_PRVIF (P11675) Immediate-early protein IE180| Length = 1461 Score = 28.5 bits (62), Expect = 4.2 Identities = 19/55 (34%), Positives = 25/55 (45%) Frame = +3 Query: 180 SSAAAKGGRQRRRPRDAAGSNPPPPRRADAGSSSLPDLSSIYAAGGVARGYPVGE 344 + A A GG R P + ++P +GSS P S+ ARG PVGE Sbjct: 157 AEAGAPGGPGRSSP---SAASPASSSSGSSGSSGSPGPSAAPRRWSPARGDPVGE 208
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Frame = +3 Query: 174 RNSSAAAKGGRQRRRPRDAA-GSNPPPPRRADAGSSSLP 287 R+SS A+ RR R PPPPR DAG P Sbjct: 114 RSSSPRARSPPPRRHSRSPPLRGQPPPPRHRDAGGDYRP 152
>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic| chromosome-associated protein) (MCAP) Length = 1400 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/35 (31%), Positives = 20/35 (57%) Frame = +3 Query: 162 GDIIRNSSAAAKGGRQRRRPRDAAGSNPPPPRRAD 266 GD + S + + + +P +AA +NPPPP ++ Sbjct: 18 GDGLETSQMSTTQAQAQPQPANAASTNPPPPETSN 52
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)| Length = 1362 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/35 (31%), Positives = 20/35 (57%) Frame = +3 Query: 162 GDIIRNSSAAAKGGRQRRRPRDAAGSNPPPPRRAD 266 GD + S + + + +P +AA +NPPPP ++ Sbjct: 18 GDGLETSQMSTTQAQAQPQPANAASTNPPPPETSN 52
>UN119_HUMAN (Q13432) Unc-119 protein homolog (Retinal protein 4) (HRG4)| Length = 240 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +3 Query: 243 PPPPRRADAGSSSLPDLSSIYAAGGVARGYPVGEE 347 P PP +++GS S PD G + R P+G E Sbjct: 29 PQPPAESESGSESEPDAGPGPRPGPLQRKQPIGPE 63
>VE2_HPV12 (P36782) Regulatory protein E2| Length = 494 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = +3 Query: 195 KGGRQRRRPRDAAGSNPPPPRRADAGSSS 281 +GGR +RR D + S P P+R+ AGS S Sbjct: 349 RGGRGKRR--DRSSSTSPTPKRSRAGSRS 375
>MA1B1_HUMAN (Q9UKM7) Endoplasmic reticulum mannosyl-oligosaccharide| 1,2-alpha-mannosidase (EC 3.2.1.113) (ER alpha-1,2-mannosidase) (Mannosidase alpha class 1B member 1) (Man9GlcNAc2-specific-processing alpha-mannosidase) Length = 699 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 6/49 (12%) Frame = +3 Query: 207 QRRRPRDAAGSNP------PPPRRADAGSSSLPDLSSIYAAGGVARGYP 335 Q+ RP + AG P P P++AD +LP++SS + RG P Sbjct: 119 QKMRP-EIAGLKPANPPVLPAPQKADTDPENLPEISSQKTQRHIQRGPP 166
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = +3 Query: 207 QRRRPRDAAGSNPPPPRRADAGSSSLPDLSSIYAAGGVARGYP 335 Q +RP+DAA P P G+ +P + AAG RG P Sbjct: 2900 QAQRPQDAAAL--PTPTIKAVGARPVPKATGALAAGARPRGQP 2940
>DPOL_HCMVA (P08546) DNA polymerase (EC 2.7.7.7)| Length = 1242 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +3 Query: 156 LSGDIIRNSSAAAKGGRQRRRPRDAAGSNPPPPRR 260 LSG + A A G RQR +P A GS PP++ Sbjct: 7 LSGGV--TGGAVAGGRRQRSQPGSAQGSGKRPPQK 39
>LEXA_CAUCR (Q9A724) LexA repressor (EC 3.4.21.88)| Length = 234 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = +3 Query: 180 SSAAAKGGRQRRRPRDAAGSNPPPPRRADAGSSSLPDLSSIYAAGGVARGYPV 338 ++AA GR RP+ G PPP + A +++ D + G +A G P+ Sbjct: 74 TAAAPPKGRGAFRPQVFEGGGAPPPAASPAAAAN--DSRELPILGRIAAGTPI 124
>VE2_HPV17 (P36785) Regulatory protein E2| Length = 452 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Frame = +3 Query: 174 RNSSAAAKGG--RQRRRPRDAAGSNPPPPRRADAGSSSLPDLSS 299 R A ++GG RQRRR R + + P R GSS P S Sbjct: 271 RGRQAISRGGERRQRRRERSYSRDSSRSPNRGRGGSSGGPTTRS 314
>DIAP3_HUMAN (Q9NSV4) Protein diaphanous homolog 3 (Diaphanous-related formin-3)| (DRF3) Length = 1110 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +3 Query: 180 SSAAAKGGRQRRRPRDAAGSNPPPP 254 SSA+ +G R+ + PR +PPPP Sbjct: 23 SSASLRGCRESKMPRRKGPQHPPPP 47
>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID| domain-containing protein 1A) (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like pr Length = 2285 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = +3 Query: 186 AAAKGGRQRRRPRDAAGSNPPPPRRADAGSSS 281 ++ +GG AAGS PPP A A SSS Sbjct: 232 SSPRGGTPGSGAAAAAGSKPPPSSSASASSSS 263
>RIR1_HHV11 (P08543) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) (136 kDa subunit) Length = 1137 Score = 27.7 bits (60), Expect = 7.2 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Frame = +3 Query: 162 GDIIRNSSAAAKGGRQRRRPRDAAGSNPPPPR-RADAGSSSLPDLSSIYAAGGVARGYPV 338 G R S+ + G + P +A G PPPPR G S D A G G PV Sbjct: 124 GGTPRRSAGTSTGTQTADVPTEALGGPPPPPRFTLGGGCCSCRDTRRRSAVFG-GEGDPV 182 Query: 339 G 341 G Sbjct: 183 G 183
>SCNAA_MOUSE (Q61180) Amiloride-sensitive sodium channel alpha-subunit| (Epithelial Na+ channel alpha subunit) (Alpha ENaC) (Nonvoltage-gated sodium channel 1 alpha subunit) (SCNEA) (Alpha NaCH) Length = 699 Score = 27.3 bits (59), Expect = 9.4 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 12/50 (24%) Frame = +3 Query: 177 NSSAAAKGGRQRRRPRDAAGS---------NPPPP---RRADAGSSSLPD 290 NSS + G +RR RD G+ PPPP R A + SSS+ D Sbjct: 190 NSSYTRQAGGRRRSTRDLRGALPHPLQRLRTPPPPNPARSARSASSSVRD 239
>RFNG_CHICK (O12972) Beta-1,3-N-acetylglucosaminyltransferase radical fringe| (EC 2.4.1.222) (O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) Length = 372 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Frame = +3 Query: 210 RRRPRDAAGSNPPPPRRADAGSSSLP-DLSSIYAAGGVARG 329 RRRP A S P P R A S +P D A G RG Sbjct: 37 RRRPPPAGPSRPSPKREARPAGSDVPGDRGGGSGAAGGGRG 77
>KCTD2_MOUSE (Q8CEZ0) Potassium channel tetramerisation domain-containing| protein 2 Length = 266 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/43 (41%), Positives = 21/43 (48%) Frame = +3 Query: 213 RRPRDAAGSNPPPPRRADAGSSSLPDLSSIYAAGGVARGYPVG 341 R P D A S PPPPR A A + + A G RG P+G Sbjct: 39 RHPADTAAS-PPPPRTAGARART-------SGADGRRRGRPLG 73
>RAI1_MOUSE (Q61818) Retinoic acid-induced protein 1| Length = 1889 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +3 Query: 207 QRRRPRDAAGSNPPPPRRADAGSSSLPDLSSIYAA 311 QR RPR + PPPP A L SS+ +A Sbjct: 1253 QRARPRGSGEPPPPPPLEPPAACMGLSTQSSLPSA 1287
>PTSJ_SALTY (P40193) Putative transcriptional regulatory protein ptsJ| Length = 430 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Frame = +3 Query: 159 SGDIIRNSSA--AAKGGRQRRRPRDAAGSNPPPPRRADAGSSSLPDLSSIYA 308 +G +I+ S + A +GG D +G NP P R LPDLS +A Sbjct: 65 NGTVIKGSPSPVALEGGDPHTPLHDLSGGNPDPQR--------LPDLSRYFA 108
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Frame = +3 Query: 219 PRDAAGSNPPPPRRADAGSSSLPDLSSIYAAGGV-ARGYP 335 P A + PPPP + AG+ + S AGG RG P Sbjct: 669 PPGAYATGPPPPPTSQAGAGGANSMPSGAQAGGYPGRGMP 708
>DRD4_MUSPF (Q6TLJ0) D(4) dopamine receptor (Dopamine D4 receptor)| Length = 357 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = +3 Query: 171 IRNSSAAAKGGRQRRRPRDAAGSNPPPPRRAD 266 +R AA + RRPR +G PPPP + Sbjct: 214 LRRWEAARRTKLHGRRPRRPSGPGPPPPEAVE 245
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2158 Score = 27.3 bits (59), Expect = 9.4 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Frame = +3 Query: 147 VAQLSGDIIRNSSAAAKGGRQRRRP---RDAAGSNPPPPRRAD--AGSSSLPDLSSIYAA 311 +AQLS R + A GG R +P + GS+P PP R D SS++ Sbjct: 1476 LAQLSS---RQGNVTAPGGHPRPKPGPPQAPQGSSPRPPTRYDPPRASSAISSDPHFEEP 1532 Query: 312 GGVARG 329 G + RG Sbjct: 1533 GPMVRG 1538 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,051,636 Number of Sequences: 219361 Number of extensions: 238298 Number of successful extensions: 2100 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 1831 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2050 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
