ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl01d05 |
|---|---|
| Clone Library Name | barley_pub |
>UBP14_ARATH (Q8L6Y1) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) (AtUBP14) (TITAN-6 protein) Length = 797 Score = 167 bits (424), Expect = 9e-42 Identities = 77/109 (70%), Positives = 94/109 (86%) Frame = +3 Query: 132 NLHKVRIPEPTNRIHKDECCVSFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYL 311 NL +V+IPEPT+RI+K ECC+SFDTPRSEGGL+VDMNSFL FG+++V+WN+EK+ NPVYL Sbjct: 7 NLSRVQIPEPTHRIYKHECCISFDTPRSEGGLFVDMNSFLAFGKDYVSWNYEKTGNPVYL 66 Query: 312 HIVQRRKPEPDETDRPLKKPTLLAIGVEGGFGEQEPEYDVTYEIVILPE 458 HI Q RK P+ DRPLKKPTLLAIGV+GGF EPEY+ +Y IVILP+ Sbjct: 67 HIKQTRKSIPE--DRPLKKPTLLAIGVDGGFDNNEPEYEESYSIVILPD 113
>UBP5_MOUSE (P56399) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 120 bits (300), Expect = 2e-27 Identities = 60/115 (52%), Positives = 82/115 (71%), Gaps = 7/115 (6%) Frame = +3 Query: 135 LHKVRIPEPTNRIHKDECCVSFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYLH 314 L +R+P+ +R+HKDEC SFDTP SEGGLY+ MN+FLGFG+++V +F K+ VYLH Sbjct: 13 LPTIRVPKAGDRVHKDECAFSFDTPESEGGLYICMNTFLGFGKQYVERHFNKTGQRVYLH 72 Query: 315 IVQRRKPEPDET-----DRPLKKPTLLAIGVEGGFG--EQEPEYDVTYEIVILPE 458 + + R+P+ ++T D P KKPT LAIGVEGGF E + E+D +IVILP+ Sbjct: 73 LRRTRRPKEEDTSAGTGDPPRKKPTRLAIGVEGGFDLTEDKFEFDEDVKIVILPD 127
>UBP5_HUMAN (P45974) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 117 bits (293), Expect = 1e-26 Identities = 59/115 (51%), Positives = 81/115 (70%), Gaps = 7/115 (6%) Frame = +3 Query: 135 LHKVRIPEPTNRIHKDECCVSFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYLH 314 L +R+P+ +R+HKDEC SFDTP SEGGLY+ MN+FLGFG+++V +F K+ VYLH Sbjct: 13 LPTIRVPKAGDRVHKDECAFSFDTPESEGGLYICMNTFLGFGKQYVERHFNKTGQRVYLH 72 Query: 315 IVQRRKPEPDET-----DRPLKKPTLLAIGVEGGF--GEQEPEYDVTYEIVILPE 458 + + R+P+ ++ D P KKPT LAIGVEGGF E++ E D +IVILP+ Sbjct: 73 LRRTRRPKEEDPATGTGDPPRKKPTRLAIGVEGGFDLSEEKFELDEDVKIVILPD 127
>UBPA_DICDI (P54201) Ubiquitin carboxyl-terminal hydrolase A (EC 3.1.2.15)| (Ubiquitin thioesterase A) (Ubiquitin-specific-processing protease A) (Deubiquitinating enzyme A) Length = 837 Score = 79.0 bits (193), Expect = 6e-15 Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 8/116 (6%) Frame = +3 Query: 135 LHKVRIPEPTNRIHKDECCVSFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYLH 314 L +++P +R+ KDECC FDTP + GL++D+ L F +++V N +K+ + +YL+ Sbjct: 7 LKNIKVPTEKSRLWKDECCYCFDTPENGEGLFIDLIGLLAFSKKYVQLNHQKTHHHLYLN 66 Query: 315 -----IVQRRKPEPD-ETDRPLKKPTLLAIGVEGGFG--EQEPEYDVTYEIVILPE 458 IV + P E K P LAIGVEGGF ++E +Y+ Y++ I P+ Sbjct: 67 FKKVAIVNEKVKSPTIENGGEEKPPKKLAIGVEGGFNVEDEEIKYEEHYKLYIFPD 122
>UBP13_HUMAN (Q92995) Ubiquitin carboxyl-terminal hydrolase 13 (EC 3.1.2.15)| (Ubiquitin thioesterase 13) (Ubiquitin-specific-processing protease 13) (Deubiquitinating enzyme 13) (Isopeptidase T-3) (ISOT-3) Length = 863 Score = 77.4 bits (189), Expect = 2e-14 Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 5/110 (4%) Frame = +3 Query: 144 VRIPEPTNRIHKDECCVSFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYLHIVQ 323 +R+P +R++K+EC S+D+P SEGGLYV MN+FL FGREHV +F K+ VY+H+ + Sbjct: 35 IRVPRSGDRVYKNECAFSYDSPNSEGGLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKR 94 Query: 324 R-----RKPEPDETDRPLKKPTLLAIGVEGGFGEQEPEYDVTYEIVILPE 458 R + L + + + EY+ ++VI P+ Sbjct: 95 HAREKVRGASGGALPKRRNSKIFLDLDTDDDLNSDDYEYEDEAKLVIFPD 144
>UBP14_SCHPO (Q11119) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) (UBA-domain-containing protein 2) Length = 775 Score = 38.1 bits (87), Expect = 0.011 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 4/102 (3%) Frame = +3 Query: 144 VRIPEPTNRIHKDECCVSFDTPRSEGGLYVDMNSFLG----FGREHVAWNFEKSENPVYL 311 V IP+ + I+++EC F++ EGG+ + + F G +H +FE++ +P+ + Sbjct: 11 VVIPDNSQVIYREECVRCFNSQDEEGGIDLCLTCFQSGCGETGLKHSLVHFEQTLHPIVV 70 Query: 312 HIVQRRKPEPDETDRPLKKPTLLAIGVEGGFGEQEPEYDVTY 437 I R+P+ D P +K T L I + E YD Y Sbjct: 71 TIA--RQPKQKINDEPPQKITKLEIRED----SDEDLYDYFY 106
>POLR_TYMVC (P28477) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 30.8 bits (68), Expect = 1.7 Identities = 24/79 (30%), Positives = 42/79 (53%) Frame = +3 Query: 195 SFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYLHIVQRRKPEPDETDRPLKKPT 374 S++ P S+ ++ +NS + G H++ +S PV+ ++QR P PD + + PT Sbjct: 208 SYNQP-SDAHSWLRINS-IRLGNHHLSVTILESWGPVHSLLIQRGTPPPDPSLQ--APPT 263 Query: 375 LLAIGVEGGFGEQEPEYDV 431 L+A + + QEP DV Sbjct: 264 LMASDLFRSY--QEPRLDV 280
>PYR2_ANASP (P31329) Phycobilisome 34.5 kDa linker polypeptide,| phycoerythrocyanin-associated, rod Length = 277 Score = 30.0 bits (66), Expect = 2.9 Identities = 15/67 (22%), Positives = 31/67 (46%) Frame = -3 Query: 287 LEVPRDVLPPEPQERVHVHVQPALRPRGVEGDAALVLVDAVGGLRDADLVEVRAEEIHGR 108 L +P +LPP V P L +GD + +++A+ G + ++ R+ +++ Sbjct: 193 LNLPNGILPPTSAGTNFVSAAPTLISSATKGDNRMFVIEAIAGGLNTNVAVRRSRQVYTV 252 Query: 107 GPRRTTA 87 R +A Sbjct: 253 SYERLSA 259
>POLR_TYMV (P10358) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 29.3 bits (64), Expect = 5.0 Identities = 23/79 (29%), Positives = 41/79 (51%) Frame = +3 Query: 195 SFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYLHIVQRRKPEPDETDRPLKKPT 374 S++ P S+ ++ +NS + G H++ +S PV+ ++QR P PD + + PT Sbjct: 208 SYNQP-SDAHSWLRINS-IRLGNHHLSVTILESWGPVHSLLIQRGTPPPDPSLQ--APPT 263 Query: 375 LLAIGVEGGFGEQEPEYDV 431 L+ + + QEP DV Sbjct: 264 LMTSDLFRSY--QEPRLDV 280
>TERT_HUMAN (O14746) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase| catalytic subunit) (HEST2) (Telomerase-associated protein 2) (TP2) Length = 1132 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +2 Query: 251 GVREGARRVELREVGEPRVPPHRAAPEA 334 G+R+ +RV+LRE+ E V HR A A Sbjct: 588 GIRQHLKRVQLRELSEAEVRQHREARPA 615
>DEXB_STRPN (Q54796) Glucan 1,6-alpha-glucosidase (EC 3.2.1.70) (Dextran| glucosidase) (Exo-1,6-alpha-glucosidase) (Glucodextranase) Length = 535 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/62 (20%), Positives = 30/62 (48%) Frame = +3 Query: 183 ECCVSFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYLHIVQRRKPEPDETDRPL 362 E C + D+P + ++ D + L AW +++ YLH +++P+ + + L Sbjct: 113 EACENTDSPERDYYIWRDEPNDLDSIFSGSAWEYDEKSGQYYLHFFSKKQPDLNWENEKL 172 Query: 363 KK 368 ++ Sbjct: 173 RQ 174
>3MGH_MYCLE (O05678) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 214 Score = 28.9 bits (63), Expect = 6.6 Identities = 20/65 (30%), Positives = 29/65 (44%) Frame = -3 Query: 293 RLLEVPRDVLPPEPQERVHVHVQPALRPRGVEGDAALVLVDAVGGLRDADLVEVRAEEIH 114 ++ V D L +P H + + RGV A +V V+A GG+ D + A H Sbjct: 8 KICAVSADQLVVDPVVAAHRLLGATITGRGV--CAIVVEVEAYGGVPDGPWPDAAAHSYH 65 Query: 113 GRGPR 99 GR R Sbjct: 66 GRNDR 70 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,609,321 Number of Sequences: 219361 Number of extensions: 1118713 Number of successful extensions: 4251 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4085 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4241 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
