ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl01d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_550320.1| Oryza sativa (japonica cultivar-group), mRNA 448 e-123
2dbj|AK103230.1| Oryza sativa (japonica cultivar-group) cDNA clon... 448 e-123
3gb|AY105079.1| Zea mays PCO107820 mRNA sequence 377 e-101
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 216 5e-53
5dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic D... 216 5e-53
6emb|AL606642.3|OSJN00073 Oryza sativa genomic DNA, chromosome 4,... 133 6e-28
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 133 6e-28
8ref|XM_470996.1| Oryza sativa (japonica cultivar-group), predic... 101 2e-18
9emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
10gb|AF165214.1|AF165214 Bacteriophage D3, complete genome 42 1.6
11dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 42 1.6
12dbj|AK121934.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
13ref|NM_197601.1| Oryza sativa (japonica cultivar-group) hypothet... 40 6.2
14ref|XM_469431.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
15gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
16gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 6.2
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.2
18gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genom... 40 6.2
19gb|AC101737.6| Mus musculus chromosome 1, clone RP23-471L1, comp... 40 6.2
20ref|XM_387351.1| Gibberella zeae PH-1 chromosome 4 conserved hyp... 40 6.2
21emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.2
22emb|CR861453.1| Pongo pygmaeus mRNA; cDNA DKFZp459D032 (from clo... 40 6.2
23gb|AF003139.2| Caenorhabditis elegans cosmid F53G12, complete se... 40 6.2
24gb|AC011407.6| Homo sapiens chromosome 5 clone CTB-54I1, complet... 40 6.2
25gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 geno... 40 6.2
26dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
27dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
28gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 6.2
29gb|AC023471.4|AC023471 Homo sapiens chromosome 3 clone RP11-126L... 40 6.2
30gb|AC018818.5|AC018818 Homo sapiens chromosome 3 clone RP11-266E... 40 6.2
31ref|NM_208320.1| Eremothecium gossypii ABR021Wp (ABR021W), mRNA 40 6.2
32gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
33gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 6.2
34gb|AC027128.5| Homo sapiens chromosome 3 clone RP11-627C1 map 3p... 40 6.2
35gb|AC018495.5| Homo sapiens chromosome 3 clone RP11-193K15 map 3... 40 6.2 
>ref|XM_550320.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2910

 Score =  448 bits (226), Expect = e-123
 Identities = 342/380 (90%), Gaps = 3/380 (0%)
 Strand = Plus / Plus

                                                                       
Query: 84  ctccgccgtcgtccgccgcgggccgcggccatggatctcctccgcgcgaacctccacaag 143
           |||||||| || ||| ||| | ||||||||||||||||||||||| || |||||||||||
Sbjct: 96  ctccgccgccgcccggcgccgcccgcggccatggatctcctccgctcgcacctccacaag 155

                                                                       
Query: 144 gtccgcatcccggagcccaccaaccgcatccacaaggacgagtgctgcgtctccttcgac 203
           ||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||
Sbjct: 156 gtccgcatcccggagcccggcagccgcatccacaaggacgagtgctgcgtctccttcgac 215

                                                                       
Query: 204 accccgaggtcggagggcgggctgtacgtggacatgaactcgttcctggggttcgggagg 263
           ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 216 accccgaggtcggagggtgggctgtacgtcgacatgacctcgttcctggggttcgggagg 275

                                                                       
Query: 264 gagcacgtcgcgtggaacttcgagaagtcggagaaccccgtgtacctccacatcgtgcag 323
           |||||||| |||||||||| |||||||   | ||||||||||||||||||||||||||||
Sbjct: 276 gagcacgtggcgtggaactacgagaagagtgggaaccccgtgtacctccacatcgtgcag 335

                                                                       
Query: 324 cgccggaagccggagcc---ggacgagacagatcgcccgctgaagaagccaaccctgctc 380
           |||||||||||||||||    |||||| | |||||||||||||||||||| || || |||
Sbjct: 336 cgccggaagccggagcccgacgacgaggcggatcgcccgctgaagaagcccacgctactc 395

                                                                       
Query: 381 gccatcggcgtggagggaggttttggtgaacaagaacccgaatacgatgtgacttatgaa 440
           |||||||| ||||||||||||||   ||| ||||||||||||||||||| | ||| ||||
Sbjct: 396 gccatcggagtggagggaggtttcactgatcaagaacccgaatacgatgaggcttttgaa 455

                               
Query: 441 atcgttattttgcctgaatt 460
           || ||||| |||||||||||
Sbjct: 456 attgttatcttgcctgaatt 475



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 33 ctcgtcgcctcgccgtctcc 52
          ||||||||||||||||||||
Sbjct: 40 ctcgtcgcctcgccgtctcc 59
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>dbj|AK103230.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123D13, full
           insert sequence
          Length = 2910

 Score =  448 bits (226), Expect = e-123
 Identities = 342/380 (90%), Gaps = 3/380 (0%)
 Strand = Plus / Plus

                                                                       
Query: 84  ctccgccgtcgtccgccgcgggccgcggccatggatctcctccgcgcgaacctccacaag 143
           |||||||| || ||| ||| | ||||||||||||||||||||||| || |||||||||||
Sbjct: 96  ctccgccgccgcccggcgccgcccgcggccatggatctcctccgctcgcacctccacaag 155

                                                                       
Query: 144 gtccgcatcccggagcccaccaaccgcatccacaaggacgagtgctgcgtctccttcgac 203
           ||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||
Sbjct: 156 gtccgcatcccggagcccggcagccgcatccacaaggacgagtgctgcgtctccttcgac 215

                                                                       
Query: 204 accccgaggtcggagggcgggctgtacgtggacatgaactcgttcctggggttcgggagg 263
           ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 216 accccgaggtcggagggtgggctgtacgtcgacatgacctcgttcctggggttcgggagg 275

                                                                       
Query: 264 gagcacgtcgcgtggaacttcgagaagtcggagaaccccgtgtacctccacatcgtgcag 323
           |||||||| |||||||||| |||||||   | ||||||||||||||||||||||||||||
Sbjct: 276 gagcacgtggcgtggaactacgagaagagtgggaaccccgtgtacctccacatcgtgcag 335

                                                                       
Query: 324 cgccggaagccggagcc---ggacgagacagatcgcccgctgaagaagccaaccctgctc 380
           |||||||||||||||||    |||||| | |||||||||||||||||||| || || |||
Sbjct: 336 cgccggaagccggagcccgacgacgaggcggatcgcccgctgaagaagcccacgctactc 395

                                                                       
Query: 381 gccatcggcgtggagggaggttttggtgaacaagaacccgaatacgatgtgacttatgaa 440
           |||||||| ||||||||||||||   ||| ||||||||||||||||||| | ||| ||||
Sbjct: 396 gccatcggagtggagggaggtttcactgatcaagaacccgaatacgatgaggcttttgaa 455

                               
Query: 441 atcgttattttgcctgaatt 460
           || ||||| |||||||||||
Sbjct: 456 attgttatcttgcctgaatt 475



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 33 ctcgtcgcctcgccgtctcc 52
          ||||||||||||||||||||
Sbjct: 40 ctcgtcgcctcgccgtctcc 59
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>gb|AY105079.1| Zea mays PCO107820 mRNA sequence
          Length = 2648

 Score =  377 bits (190), Expect = e-101
 Identities = 307/346 (88%)
 Strand = Plus / Plus

                                                                       
Query: 97  cgccgcgggccgcggccatggatctcctccgcgcgaacctccacaaggtccgcatcccgg 156
           |||||| | |||||| |||||||||||| ||| |  | |||||||||||||| ||||| |
Sbjct: 38  cgccgccgcccgcggacatggatctccttcgctctcatctccacaaggtccggatccccg 97

                                                                       
Query: 157 agcccaccaaccgcatccacaaggacgagtgctgcgtctccttcgacaccccgaggtcgg 216
           |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 98  agccaaccaaccgcatccacaaggacgagtgctgcgtctccttcgacactccgaggtcag 157

                                                                       
Query: 217 agggcgggctgtacgtggacatgaactcgttcctggggttcgggagggagcacgtcgcgt 276
           |||| || |||||||||||||||  ||||||||||||||||||||||||| |||| | ||
Sbjct: 158 agggaggcctgtacgtggacatggtctcgttcctggggttcgggagggagtacgtggagt 217

                                                                       
Query: 277 ggaacttcgagaagtcggagaaccccgtgtacctccacatcgtgcagcgccggaagccgg 336
           |||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 218 ggaacttcgagaagacggggaaccccgtgtacctccacatcgttcagcgccggaagccgg 277

                                                                       
Query: 337 agccggacgagacagatcgcccgctgaagaagccaaccctgctcgccatcggcgtggagg 396
           |||| |||||| | ||||||||||| |||||||| ||||| ||||| || || ||||| |
Sbjct: 278 agcccgacgaggcggatcgcccgcttaagaagcccaccctcctcgctataggtgtggaag 337

                                                         
Query: 397 gaggttttggtgaacaagaacccgaatacgatgtgacttatgaaat 442
           ||||||||||||| |||||||| ||||| ||||  |||| ||||||
Sbjct: 338 gaggttttggtgatcaagaaccagaatatgatgaaacttttgaaat 383
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  216 bits (109), Expect = 5e-53
 Identities = 165/183 (90%), Gaps = 3/183 (1%)
 Strand = Plus / Plus

                                                                           
Query: 209     gaggtcggagggcgggctgtacgtggacatgaactcgttcctggggttcgggagggagca 268
               |||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 3985964 gaggtcggagggtgggctgtacgtcgacatgacctcgttcctggggttcgggagggagca 3986023

                                                                           
Query: 269     cgtcgcgtggaacttcgagaagtcggagaaccccgtgtacctccacatcgtgcagcgccg 328
               ||| |||||||||| |||||||   | |||||||||||||||||||||||||||||||||
Sbjct: 3986024 cgtggcgtggaactacgagaagagtgggaaccccgtgtacctccacatcgtgcagcgccg 3986083

                                                                           
Query: 329     gaagccggagcc---ggacgagacagatcgcccgctgaagaagccaaccctgctcgccat 385
               ||||||||||||    |||||| | |||||||||||||||||||| || || ||||||||
Sbjct: 3986084 gaagccggagcccgacgacgaggcggatcgcccgctgaagaagcccacgctactcgccat 3986143

                  
Query: 386     cgg 388
               |||
Sbjct: 3986144 cgg 3986146



 Score =  170 bits (86), Expect = 3e-39
 Identities = 116/126 (92%)
 Strand = Plus / Plus

                                                                           
Query: 84      ctccgccgtcgtccgccgcgggccgcggccatggatctcctccgcgcgaacctccacaag 143
               |||||||| || ||| ||| | ||||||||||||||||||||||| || |||||||||||
Sbjct: 3985741 ctccgccgccgcccggcgccgcccgcggccatggatctcctccgctcgcacctccacaag 3985800

                                                                           
Query: 144     gtccgcatcccggagcccaccaaccgcatccacaaggacgagtgctgcgtctccttcgac 203
               ||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||
Sbjct: 3985801 gtccgcatcccggagcccggcagccgcatccacaaggacgagtgctgcgtctccttcgac 3985860

                     
Query: 204     accccg 209
               ||||||
Sbjct: 3985861 accccg 3985866



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                           
Query: 390     gtggagggaggttttggtgaacaagaacccgaatacgatgtgacttatgaaatcgttatt 449
               ||||||||||||||   ||| ||||||||||||||||||| | ||| |||||| ||||| 
Sbjct: 3986670 gtggagggaggtttcactgatcaagaacccgaatacgatgaggcttttgaaattgttatc 3986729

                          
Query: 450     ttgcctgaatt 460
               |||||||||||
Sbjct: 3986730 ttgcctgaatt 3986740



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 33      ctcgtcgcctcgccgtctcc 52
               ||||||||||||||||||||
Sbjct: 3985685 ctcgtcgcctcgccgtctcc 3985704
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>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0013F10
          Length = 163095

 Score =  216 bits (109), Expect = 5e-53
 Identities = 165/183 (90%), Gaps = 3/183 (1%)
 Strand = Plus / Plus

                                                                          
Query: 209    gaggtcggagggcgggctgtacgtggacatgaactcgttcctggggttcgggagggagca 268
              |||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 107868 gaggtcggagggtgggctgtacgtcgacatgacctcgttcctggggttcgggagggagca 107927

                                                                          
Query: 269    cgtcgcgtggaacttcgagaagtcggagaaccccgtgtacctccacatcgtgcagcgccg 328
              ||| |||||||||| |||||||   | |||||||||||||||||||||||||||||||||
Sbjct: 107928 cgtggcgtggaactacgagaagagtgggaaccccgtgtacctccacatcgtgcagcgccg 107987

                                                                          
Query: 329    gaagccggagcc---ggacgagacagatcgcccgctgaagaagccaaccctgctcgccat 385
              ||||||||||||    |||||| | |||||||||||||||||||| || || ||||||||
Sbjct: 107988 gaagccggagcccgacgacgaggcggatcgcccgctgaagaagcccacgctactcgccat 108047

                 
Query: 386    cgg 388
              |||
Sbjct: 108048 cgg 108050



 Score =  170 bits (86), Expect = 3e-39
 Identities = 116/126 (92%)
 Strand = Plus / Plus

                                                                          
Query: 84     ctccgccgtcgtccgccgcgggccgcggccatggatctcctccgcgcgaacctccacaag 143
              |||||||| || ||| ||| | ||||||||||||||||||||||| || |||||||||||
Sbjct: 107645 ctccgccgccgcccggcgccgcccgcggccatggatctcctccgctcgcacctccacaag 107704

                                                                          
Query: 144    gtccgcatcccggagcccaccaaccgcatccacaaggacgagtgctgcgtctccttcgac 203
              ||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||
Sbjct: 107705 gtccgcatcccggagcccggcagccgcatccacaaggacgagtgctgcgtctccttcgac 107764

                    
Query: 204    accccg 209
              ||||||
Sbjct: 107765 accccg 107770



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                          
Query: 390    gtggagggaggttttggtgaacaagaacccgaatacgatgtgacttatgaaatcgttatt 449
              ||||||||||||||   ||| ||||||||||||||||||| | ||| |||||| ||||| 
Sbjct: 108574 gtggagggaggtttcactgatcaagaacccgaatacgatgaggcttttgaaattgttatc 108633

                         
Query: 450    ttgcctgaatt 460
              |||||||||||
Sbjct: 108634 ttgcctgaatt 108644



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     ctcgtcgcctcgccgtctcc 52
              ||||||||||||||||||||
Sbjct: 107589 ctcgtcgcctcgccgtctcc 107608
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>emb|AL606642.3|OSJN00073 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H06,
             complete sequence
          Length = 143730

 Score =  133 bits (67), Expect = 6e-28
 Identities = 91/99 (91%)
 Strand = Plus / Minus

                                                                         
Query: 111   gccatggatctcctccgcgcgaacctccacaaggtccgcatcccggagcccaccaaccgc 170
             |||||||||||||||||| || |||||||||||||| |||||| |||||||  || ||||
Sbjct: 26601 gccatggatctcctccgctcgcacctccacaaggtctgcatcctggagcccggcagccgc 26542

                                                    
Query: 171   atccacaaggacgagtgctgcgtctccttcgacaccccg 209
             ||||||||||||||||||| |||||||||||||||||||
Sbjct: 26541 atccacaaggacgagtgcttcgtctccttcgacaccccg 26503



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                                
Query: 296   gaaccccgtgtacctccacatcgtgcagcgccggaagccggagccggacga 346
             |||||||||||||||||||||| |||||||||| ||||| ||||| |||||
Sbjct: 26355 gaaccccgtgtacctccacatcatgcagcgccgaaagccagagcccgacga 26305



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                
Query: 213   tcggagggcgggctgtacgtggacatgaactcgttcctggggttcgggagg 263
             |||||||| |||||||| || ||||||| ||||||||| ||||||||||||
Sbjct: 26405 tcggagggtgggctgtatgtcgacatgacctcgttccttgggttcgggagg 26355



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 31    atctcgtcgcctcgccgtctcc 52
             ||||||||||||||||||||||
Sbjct: 26689 atctcgtcgcctcgccgtctcc 26668
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score =  133 bits (67), Expect = 6e-28
 Identities = 91/99 (91%)
 Strand = Plus / Minus

                                                                          
Query: 111    gccatggatctcctccgcgcgaacctccacaaggtccgcatcccggagcccaccaaccgc 170
              |||||||||||||||||| || |||||||||||||| |||||| |||||||  || ||||
Sbjct: 495633 gccatggatctcctccgctcgcacctccacaaggtctgcatcctggagcccggcagccgc 495574

                                                     
Query: 171    atccacaaggacgagtgctgcgtctccttcgacaccccg 209
              ||||||||||||||||||| |||||||||||||||||||
Sbjct: 495573 atccacaaggacgagtgcttcgtctccttcgacaccccg 495535



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                                 
Query: 296    gaaccccgtgtacctccacatcgtgcagcgccggaagccggagccggacga 346
              |||||||||||||||||||||| |||||||||| ||||| ||||| |||||
Sbjct: 495387 gaaccccgtgtacctccacatcatgcagcgccgaaagccagagcccgacga 495337



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                 
Query: 213    tcggagggcgggctgtacgtggacatgaactcgttcctggggttcgggagg 263
              |||||||| |||||||| || ||||||| ||||||||| ||||||||||||
Sbjct: 495437 tcggagggtgggctgtatgtcgacatgacctcgttccttgggttcgggagg 495387



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 31     atctcgtcgcctcgccgtctcc 52
              ||||||||||||||||||||||
Sbjct: 495721 atctcgtcgcctcgccgtctcc 495700



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 247      tcctggggttcgggagggagc 267
                |||||||||||||||||||||
Sbjct: 26258170 tcctggggttcgggagggagc 26258150
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>ref|XM_470996.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1710

 Score =  101 bits (51), Expect = 2e-18
 Identities = 69/75 (92%)
 Strand = Plus / Minus

                                                                        
Query: 135  ctccacaaggtccgcatcccggagcccaccaaccgcatccacaaggacgagtgctgcgtc 194
            |||||||||||| |||||| |||||||  || ||||||||||||||||||||||| ||||
Sbjct: 1359 ctccacaaggtctgcatcctggagcccggcagccgcatccacaaggacgagtgcttcgtc 1300

                           
Query: 195  tccttcgacaccccg 209
            |||||||||||||||
Sbjct: 1299 tccttcgacaccccg 1285
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>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10,
             complete sequence
          Length = 141545

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 247   tcctggggttcgggagggagc 267
             |||||||||||||||||||||
Sbjct: 34747 tcctggggttcgggagggagc 34727
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>gb|AF165214.1|AF165214 Bacteriophage D3, complete genome
          Length = 56425

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 239   gaactcgttcctggggttcgg 259
             |||||||||||||||||||||
Sbjct: 50006 gaactcgttcctggggttcgg 50026
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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 395     gggaggttttggtgaacaaga 415
               |||||||||||||||||||||
Sbjct: 2425127 gggaggttttggtgaacaaga 2425107
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>dbj|AK121934.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107A05, full
           insert sequence
          Length = 1145

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 247 tcctggggttcgggagggagc 267
           |||||||||||||||||||||
Sbjct: 73  tcctggggttcgggagggagc 53
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>ref|NM_197601.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBb0015I11.19), mRNA
          Length = 999

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 186 tgctgcgtctccttcgacaccccg 209
           ||||||||| ||||||||||||||
Sbjct: 478 tgctgcgtcgccttcgacaccccg 501
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>ref|XM_469431.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 600

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 90  cgtcgtccgccgcgggccgc 109
           ||||||||||||||||||||
Sbjct: 529 cgtcgtccgccgcgggccgc 510
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>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08
             map R2847, complete sequence
          Length = 100918

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    cgtcgtccgccgcgggccgc 109
             ||||||||||||||||||||
Sbjct: 65570 cgtcgtccgccgcgggccgc 65589
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     gtcgtccgccgcgggccgcg 110
              ||||||||||||||||||||
Sbjct: 270923 gtcgtccgccgcgggccgcg 270942
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 90       cgtcgtccgccgcgggccgc 109
                ||||||||||||||||||||
Sbjct: 27929842 cgtcgtccgccgcgggccgc 27929861
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>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete
             sequence
          Length = 133889

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    cgtcgtccgccgcgggccgc 109
             ||||||||||||||||||||
Sbjct: 95184 cgtcgtccgccgcgggccgc 95165
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>gb|AC101737.6| Mus musculus chromosome 1, clone RP23-471L1, complete sequence
          Length = 235405

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 48    tctccccacgcccccaaaacccta 71
             ||||||||| ||||||||||||||
Sbjct: 96709 tctccccacccccccaaaacccta 96732
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>ref|XM_387351.1| Gibberella zeae PH-1 chromosome 4 conserved hypothetical protein
            (FG07175.1) partial mRNA
          Length = 3315

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 279  aacttcgagaagtcggagaacccc 302
            |||||||||||||||||| |||||
Sbjct: 2785 aacttcgagaagtcggaggacccc 2808
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 91      gtcgtccgccgcgggccgcg 110
               ||||||||||||||||||||
Sbjct: 1596724 gtcgtccgccgcgggccgcg 1596743
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>emb|CR861453.1| Pongo pygmaeus mRNA; cDNA DKFZp459D032 (from clone DKFZp459D032)
          Length = 3180

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 172 tccacaaggacgagtgctgcgtctccttcgacaccccgaggtcggagggcgg 223
           ||||||| |||||||||  | ||||||||||||| |||  ||| ||||||||
Sbjct: 107 tccacaaagacgagtgcgccttctccttcgacacgccggagtctgagggcgg 158
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>gb|AF003139.2| Caenorhabditis elegans cosmid F53G12, complete sequence
          Length = 41553

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 32  tctcgtcgcctcgccgtctc 51
           ||||||||||||||||||||
Sbjct: 674 tctcgtcgcctcgccgtctc 655
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>gb|AC011407.6| Homo sapiens chromosome 5 clone CTB-54I1, complete sequence
          Length = 240957

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 356    cccgctgaagaagccaaccc 375
              ||||||||||||||||||||
Sbjct: 134920 cccgctgaagaagccaaccc 134901
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>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete
              sequence
          Length = 138824

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 186    tgctgcgtctccttcgacaccccg 209
              ||||||||| ||||||||||||||
Sbjct: 111528 tgctgcgtcgccttcgacaccccg 111551
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 186      tgctgcgtctccttcgacaccccg 209
                ||||||||| ||||||||||||||
Sbjct: 20710076 tgctgcgtcgccttcgacaccccg 20710099
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 90       cgtcgtccgccgcgggccgc 109
                ||||||||||||||||||||
Sbjct: 28021166 cgtcgtccgccgcgggccgc 28021185
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 91      gtcgtccgccgcgggccgcggcca 114
               |||||||||||||||| |||||||
Sbjct: 1052597 gtcgtccgccgcgggcggcggcca 1052620
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>gb|AC023471.4|AC023471 Homo sapiens chromosome 3 clone RP11-126L9 map 3p, complete sequence
          Length = 192973

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 360    ctgaagaagccaaccctgct 379
              ||||||||||||||||||||
Sbjct: 118376 ctgaagaagccaaccctgct 118395
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>gb|AC018818.5|AC018818 Homo sapiens chromosome 3 clone RP11-266E23 map 3p, complete sequence
          Length = 156335

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 360   ctgaagaagccaaccctgct 379
             ||||||||||||||||||||
Sbjct: 38220 ctgaagaagccaaccctgct 38239
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>ref|NM_208320.1| Eremothecium gossypii ABR021Wp (ABR021W), mRNA
          Length = 3255

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 149 catcccggagcccaccaacc 168
           ||||||||||||||||||||
Sbjct: 603 catcccggagcccaccaacc 622
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 186      tgctgcgtctccttcgacaccccg 209
                ||||||||| ||||||||||||||
Sbjct: 20721348 tgctgcgtcgccttcgacaccccg 20721371
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>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II,
              complete sequence
          Length = 867699

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    catcccggagcccaccaacc 168
              ||||||||||||||||||||
Sbjct: 431791 catcccggagcccaccaacc 431810
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>gb|AC027128.5| Homo sapiens chromosome 3 clone RP11-627C1 map 3p, complete sequence
          Length = 175773

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   ctgaagaagccaaccctgct 379
             ||||||||||||||||||||
Sbjct: 35177 ctgaagaagccaaccctgct 35158
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>gb|AC018495.5| Homo sapiens chromosome 3 clone RP11-193K15 map 3p, complete sequence
          Length = 173592

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 360    ctgaagaagccaaccctgct 379
              ||||||||||||||||||||
Sbjct: 131876 ctgaagaagccaaccctgct 131857


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,579,795
Number of Sequences: 3902068
Number of extensions: 2579795
Number of successful extensions: 47088
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46708
Number of HSP's gapped (non-prelim): 376
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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