>TBP7_YEAST (P40340) TAT-binding homolog 7|
          Length = 1379

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 20/77 (25%), Positives = 45/77 (58%)
 Frame = +3

Query: 246 RALVAGAPGSGQQHLVRCLLHGFVGQTVIHKLDLATMAQEGNGDILNGLTQILLKGLHLE 425
           R L+ G  G+GQQ++   +L+ ++ +  +  LDLA++  E +  I   + Q  ++    +
Sbjct: 771 RLLINGPKGNGQQYVGAAILN-YLEEFNVQNLDLASLVSESSRTIEAAVVQSFMEAKKRQ 829

Query: 426 RCIIYMPRVDLWAVNTV 476
             ++++P +D+W +NT+
Sbjct: 830 PSVVFIPNLDIW-INTI 845

>Y052_HAEIN (P71336) Protein HI0052 precursor|
          Length = 328

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 54  IQQKDIGDKIVSILSSYGLTASQLGNHGSMLLSQNKQHEKFDD 182
           + +  I +KI   +  YG+     G +G  ++S NK+ EKFDD
Sbjct: 119 VLESPIANKIGQKMEKYGIKLLAYGMNGFRVISSNKKLEKFDD 161

>Y1281_METJA (Q58677) Hypothetical protein MJ1281|
          Length = 1048

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
 Frame = +3

Query: 9   NNVPHTFWCSYLPV-----LIQQKDIGDKIVSILSSYGLT 113
           N +P+ FW SY+ V     +++ K + D++ SIL  YGL+
Sbjct: 349 NLIPNVFWASYVDVGKFSKVVKGKGVYDELNSILKCYGLS 388

>Y1826_MYCBO (P63745) Hypothetical protein Mb1826|
          Length = 610

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +3

Query: 162 QHEKFDDRRLSSTCSLN----KGGLAYKLTGFRALVAGAPGSGQQHLVRCLLHGFVGQTV 329
           +  K + + + ST  +N    K GL   +T    L+ G PG+G+  + R       G TV
Sbjct: 320 EQAKKEIKLIKSTTKVNLARAKMGLPVPVTSRHTLLLGPPGTGKTSVARAFTKQLCGLTV 379

Query: 330 IHK 338
           + K
Sbjct: 380 LRK 382

>Y1798_MYCTU (P63744) Hypothetical protein Rv1798/MT1847|
          Length = 610

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +3

Query: 162 QHEKFDDRRLSSTCSLN----KGGLAYKLTGFRALVAGAPGSGQQHLVRCLLHGFVGQTV 329
           +  K + + + ST  +N    K GL   +T    L+ G PG+G+  + R       G TV
Sbjct: 320 EQAKKEIKLIKSTTKVNLARAKMGLPVPVTSRHTLLLGPPGTGKTSVARAFTKQLCGLTV 379

Query: 330 IHK 338
           + K
Sbjct: 380 LRK 382

>V58K_BSMV (P04867) 58 kDa protein (Beta-B protein)|
          Length = 528

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
 Frame = +3

Query: 189 LSSTCSLNKGGLAYKLTGFRAL----------VAGAPGSGQQHLVRCLLHG 311
           ++  C+L +  L  KL   RAL          ++G PGSG+  +VR LL G
Sbjct: 235 MARACTLERERLKRKLLLVRALKPAVDFLTGIISGVPGSGKSTIVRTLLKG 285

>RFC4_YEAST (P40339) Activator 1 37 kDa subunit (Replication factor C subunit|
           4) (Replication factor C4)
          Length = 323

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 252 LVAGAPGSGQQHLVRCLLHGFVGQTVIH-KLDLATMAQEGNGDILNGLTQILLKGLHL 422
           +++G PG G+   V CL H  +G++     L+L      G   + N +     K LHL
Sbjct: 46  IISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHL 103

>MYOM1_HUMAN (P52179) Myomesin-1 (190 kDa titin-associated protein) (190 kDa|
           connectin-associated protein)
          Length = 1451

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 280 WPDPGAPATKARKPVNLYANPPLFREQVELNLRSSNFSCCLF 155
           WP+P     K + P+N++ANP  +  +    + +   + C F
Sbjct: 167 WPEPRVTWYKNQVPINVHANPGKYIIESRYGMHTLEINACDF 208

>Y1127_VIBCH (Q9KSX9) UPF0274 protein VC1127|
          Length = 205

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +3

Query: 117 SQLGNHGSMLLSQNKQHEKFDDRRLSSTCSLNKGGLAYKLTGFRALVAGAPG----SGQQ 284
           SQLG+   M+  Q    + FDD+ +S+  S+    ++    G R  V G P     +  Q
Sbjct: 103 SQLGDRIQMIERQLDHFDLFDDQMISNLASIYLDVIS--PIGPRIQVTGTPAVLQQTANQ 160

Query: 285 HLVRCLL 305
           H VR LL
Sbjct: 161 HKVRALL 167


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,582,611
Number of Sequences: 219361
Number of extensions: 1260572
Number of successful extensions: 3619
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3617
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)