ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl01c11 |
|---|---|
| Clone Library Name | barley_pub |
>MAGD1_PIG (Q6ITT4) Melanoma-associated antigen D1 (MAGE-D1 antigen)| Length = 784 Score = 32.0 bits (71), Expect = 0.80 Identities = 19/59 (32%), Positives = 22/59 (37%) Frame = -1 Query: 351 LGLANSSYLATQPLGQNSPKES*DPCVTLQLQWSNPLAW*ACRQQSSLILPNSSPWAGP 175 L N S QP Q P P W NP+AW Q+ +I PN W P Sbjct: 306 LAWQNPSGWQNQPARQTPPARQSPPARQTPPAWQNPVAW-----QNPVIWPNPVIWQNP 359
>LTB4D_PIG (Q29073) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) Length = 329 Score = 31.2 bits (69), Expect = 1.4 Identities = 15/41 (36%), Positives = 25/41 (60%) Frame = +3 Query: 186 MVSYSAGSVNSVVYKLTKLKDCSIVTEGLHKDLMILLESFG 308 MV+ +AG+V SVV ++ KLK C +V + + L+ +G Sbjct: 146 MVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVACLKKYG 186
>LTB4D_MOUSE (Q91YR9) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) Length = 329 Score = 31.2 bits (69), Expect = 1.4 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = +3 Query: 186 MVSYSAGSVNSVVYKLTKLKDCSIVTEGLHKDLMILLESFG 308 MVS +AG+V SVV ++ KLK C +V + + L+ G Sbjct: 146 MVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLKKLG 186
>LTB4D_HUMAN (Q14914) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) Length = 329 Score = 30.4 bits (67), Expect = 2.3 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +3 Query: 186 MVSYSAGSVNSVVYKLTKLKDCSIVTEGLHKDLMILLESFGQVVVLPSK 332 MV+ +AG+V SVV ++ KLK C +V + + L+ G VV K Sbjct: 146 MVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQKLGFDVVFNYK 194
>BTK_CHICK (Q8JH64) Tyrosine-protein kinase BTK (EC 2.7.10.2) (Bruton's| tyrosine kinase) Length = 657 Score = 30.4 bits (67), Expect = 2.3 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 12/88 (13%) Frame = +3 Query: 198 SAGSVNSVVYKLTKLKDCSIVTEGLH--------KDLMILLE----SFGQVVVLPSKMNW 341 SAG ++ + Y +++ + + T GL KDL L E FG VV K Sbjct: 364 SAGLISRLKYPVSRHQKSAPSTAGLGYGSWEIDPKDLTFLKELGTGQFG--VVKYGKWRG 421 Query: 342 QVQVWMKMVRELVFDIEDWIDQMPVMPN 425 Q V +KM+RE +++ID+ VM N Sbjct: 422 QYNVAIKMIREGSMSEDEFIDEAKVMMN 449
>LTB4D_CAVPO (Q9EQZ5) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (LTB4) (12-HD) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) (PGR) Length = 329 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = +3 Query: 186 MVSYSAGSVNSVVYKLTKLKDCSIVTEGLHKDLMILLESFG 308 +VS +AG+V SVV ++ KLK C +V + + L+ G Sbjct: 146 LVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIG 186
>MAGD1_HUMAN (Q9Y5V3) Melanoma-associated antigen D1 (MAGE-D1 antigen)| (Neurotrophin receptor-interacting MAGE homolog) (MAGE tumor antigen CCF) Length = 778 Score = 29.6 bits (65), Expect = 4.0 Identities = 18/58 (31%), Positives = 23/58 (39%) Frame = -1 Query: 348 GLANSSYLATQPLGQNSPKES*DPCVTLQLQWSNPLAW*ACRQQSSLILPNSSPWAGP 175 G N + T P Q+ P P W NP+AW Q+ +I PN W P Sbjct: 307 GWQNQTARQTPPARQSPPARQTPPA------WQNPVAW-----QNPVIWPNPVIWQNP 353
>MAGD1_RAT (Q9ES73) Melanoma-associated antigen D1 (MAGE-D1 antigen)| (Neurotrophin receptor-interacting MAGE homolog) (Sertoli cell necdin-related gene 1) (SNERG-1) Length = 775 Score = 29.3 bits (64), Expect = 5.2 Identities = 18/59 (30%), Positives = 21/59 (35%) Frame = -1 Query: 351 LGLANSSYLATQPLGQNSPKES*DPCVTLQLQWSNPLAW*ACRQQSSLILPNSSPWAGP 175 L N S Q Q P P W NP+AW Q+ +I PN W P Sbjct: 297 LAWQNPSGWQNQTARQTPPARQSPPARQTPSAWQNPVAW-----QNPVIWPNPVIWQNP 350
>PDE1C_HUMAN (Q14123) Calcium/calmodulin-dependent 3',5'-cyclic nucleotide| phosphodiesterase 1C (EC 3.1.4.17) (Cam-PDE 1C) (hCam-3) Length = 709 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +2 Query: 332 DELASPSVDEDGE--GVGLRHRGLDRSDAGDAKHRGTNTGFRRGS 460 +++ SP +DE + G G R L+ + DAK G T GS Sbjct: 447 EKIVSPLIDETSQTGGTGQRRSSLNSISSSDAKRSGVKTSGSEGS 491
>LTB4D_RAT (P97584) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) (Dithiolethione-inducible gene 1 protein) (D3T-inducible gene 1 protein) (DIG-1) Length = 329 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = +3 Query: 186 MVSYSAGSVNSVVYKLTKLKDCSIVTEGLHKDLMILLESFG 308 +V+ +AG+V SVV ++ KLK C +V + + L+ G Sbjct: 146 LVNAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLKKLG 186
>SELA_HAEDU (Q7VKC2) L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1)| (Cysteinyl-tRNA(Sec) selenium transferase) (Selenocysteine synthase) (Selenocysteinyl-tRNA(Sec) synthase) Length = 460 Score = 28.9 bits (63), Expect = 6.8 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +2 Query: 173 GGPAHGELFGRISELCCLQAHQAKGLLHCN 262 GGP G + G+ +++ LQAH K +L C+ Sbjct: 296 GGPQAGIIVGKKADIEALQAHPLKRVLRCD 325 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,914,001 Number of Sequences: 219361 Number of extensions: 910476 Number of successful extensions: 2454 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2422 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2454 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
