>NIPA_PONPY (Q5R8V9) Nuclear-interacting partner of ALK (Nuclear-interacting|
           partner of anaplastic lymphoma kinase) (Zinc finger
           C3HC-type protein 1)
          Length = 502

 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 23/71 (32%), Positives = 31/71 (43%)
 Frame = +3

Query: 273 AHSFDAAGTALDSAPSCRPWERGDLLRRLATFKPSTWDAKPKAASSLACSQRGWVNVDIG 452
           A S    G+     PS     +     R+ TF    W  KP   S L C++ GWV V+  
Sbjct: 54  ATSQSVNGSPQAEQPSLESTSKEAFFSRVETFSSLKWAGKPPELSPLVCAKYGWVTVECD 113

Query: 453 QIECESCGAHL 485
            ++C SC A L
Sbjct: 114 MLKCSSCQAFL 124

>NIPA_HUMAN (Q86WB0) Nuclear-interacting partner of ALK (Nuclear-interacting|
           partner of anaplastic lymphoma kinase) (hNIPA) (Zinc
           finger C3HC-type protein 1)
          Length = 502

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 23/71 (32%), Positives = 31/71 (43%)
 Frame = +3

Query: 273 AHSFDAAGTALDSAPSCRPWERGDLLRRLATFKPSTWDAKPKAASSLACSQRGWVNVDIG 452
           A S    G+     PS     +     R+ TF    W  KP   S L C++ GWV V+  
Sbjct: 54  ATSQSVNGSPQAEQPSLESTSKEAFFSRVETFSSLKWAGKPFELSPLVCAKYGWVTVECD 113

Query: 453 QIECESCGAHL 485
            ++C SC A L
Sbjct: 114 MLKCSSCQAFL 124

>NIPA_XENLA (Q6P7H4) NIPA-like protein (Zinc finger C3HC-type protein 1-like)|
          Length = 477

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +3

Query: 297 TALDSAPSCRPWE---RGDLLRRLATFKPSTWDAKPKAASSLACSQRGWVNVDIGQIECE 467
           TA +  P    +E   +     R+ +F    W  KP     L C++ GW N++   ++C 
Sbjct: 52  TAFEDLPGNNSYESTSKDAFFSRVESFSSLKWAGKPPELCPLICAKYGWCNIECDMLKCS 111

Query: 468 SCGAHL 485
           SC A+L
Sbjct: 112 SCNAYL 117

>NIPA_MOUSE (Q80YV2) Nuclear-interacting partner of ALK (Nuclear-interacting|
           partner of anaplastic lymphoma kinase) (mNIPA) (Zinc
           finger C3HC-type protein 1)
          Length = 501

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 354 RLATFKPSTWDAKPKAASSLACSQRGWVNVDIGQIECESCGAHL 485
           R+ TF    W  KP   S L C++ GWV V+   ++C SC A L
Sbjct: 81  RVETFSSLKWAGKPPELSPLICAKYGWVTVECDMLKCSSCQAFL 124

>NIPA_XENTR (Q5M8S7) NIPA-like protein (Zinc finger C3HC-type protein 1-like)|
          Length = 478

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 354 RLATFKPSTWDAKPKAASSLACSQRGWVNVDIGQIECESCGAHL 485
           R+ +F    W  KP     L C++ GW N++   ++C SC A+L
Sbjct: 72  RVESFSSLKWAGKPSELCPLICAKYGWSNIECDMLKCSSCNAYL 115

>MK04_RAT (Q63454) Mitogen-activated protein kinase 4 (EC 2.7.11.24)|
           (Extracellular signal-regulated kinase 4) (ERK-4) (MAP
           kinase isoform p63) (p63-MAPK) (MNK2) (Fragment)
          Length = 274

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 264 YGPAHSFDAAGTALDSAPSCRPWERGDLLRRLATFKPSTWDAK 392
           +  AH  +     LD+ P  R  ++ +LLR + +F  STW+ K
Sbjct: 203 FAGAHELEQMQLILDTIPVVREEDKEELLRVMPSFVSSTWEVK 245

>MK04_MOUSE (Q6P5G0) Mitogen-activated protein kinase 4 (EC 2.7.11.24)|
           (Extracellular signal-regulated kinase 4) (ERK-4)
          Length = 583

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 264 YGPAHSFDAAGTALDSAPSCRPWERGDLLRRLATFKPSTWDAK 392
           +  AH  +     LD+ P  R  ++ +LLR + +F  STW+ K
Sbjct: 229 FAGAHELEQMQLILDTIPVVREEDKEELLRVMPSFVSSTWEVK 271

>MK04_HUMAN (P31152) Mitogen-activated protein kinase 4 (EC 2.7.11.24)|
           (Extracellular signal-regulated kinase 4) (ERK-4) (MAP
           kinase isoform p63) (p63-MAPK)
          Length = 557

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 264 YGPAHSFDAAGTALDSAPSCRPWERGDLLRRLATFKPSTWDAK 392
           +  AH  +     L++ P  R  ++ +LLR + +F  STW+ K
Sbjct: 229 FAGAHELEQMQLILETIPVIREEDKDELLRVMPSFVSSTWEVK 271


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,293,821
Number of Sequences: 219361
Number of extensions: 870004
Number of successful extensions: 2563
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2559
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)