ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl01c09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087L08, full insert sequence Length = 3325 Score = 242 bits (122), Expect = 9e-61 Identities = 307/366 (83%), Gaps = 2/366 (0%) Strand = Plus / Plus Query: 128 gccgccgcccaccccggtggccagttctgctggtgcctcatcacctgctatgcaaattaa 187 |||||| || || ||||| || |||||||| || |||| ||||||||||||||| ||| Sbjct: 124 gccgcctcctacgccggttgcaagttctgcaggaccctcgtcacctgctatgcaagctaa 183 Query: 188 tatagtaagcatagattggctgggtaacagacaggcttccagggttgattcctcatcaca 247 | | | |||||||||||| ||||| |||||| |||||||| ||||||||||||||||| Sbjct: 184 tgttgccagcatagattggtcgggtagcagacaagcttccagagttgattcctcatcaca 243 Query: 248 cgttgcaccacatgcctatgggcctgctcatagctttgatgctgctggaactgctttgga 307 ||||| || |||||| || |||| ||||||| || ||||| |||||||||||||||| Sbjct: 244 tgttgctccgcatgcccatcagccttctcatagtttcgatgccactggaactgctttgga 303 Query: 308 ttctgcaccatcttgtagaccatgggagcgtggagacttacttcgtcgactggcaacatt 367 ||||||||| || ||||| |||||||| || |||||||||||||||||||||||||||| Sbjct: 304 ttctgcaccgtcatgtaggccatgggaacgcggagacttacttcgtcgactggcaacata 363 Query: 368 caaaccttcaacttgggatgctaagccgaaggctgctagttcattagcttgttctcaaag 427 || ||| ||||||||| | ||| ||| |||||||||||||| || |||||| ||| || Sbjct: 364 taagcctacaacttgggcttctaggcctaaggctgctagttctttggcttgtgctcggag 423 Query: 428 aggctgggtaaatgttgatattggac-aaattgaatgtgaatcatgtggtgcgcatctta 486 ||| ||||| || ||||| | ||||| |||||||||| || ||||||||||| ||||| | Sbjct: 424 aggttgggttaacgttgaca-tggacaaaattgaatgcgagtcatgtggtgcacatctca 482 Query: 487 tattca 492 |||||| Sbjct: 483 tattca 488 Score = 81.8 bits (41), Expect = 2e-12 Identities = 44/45 (97%) Strand = Plus / Plus Query: 58 tgcgggaggaggtcaggagctcgtcgggggcggcggccgagccgc 102 ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 84 tgcgggaggaggtgaggagctcgtcgggggcggcggccgagccgc 128
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 190 bits (96), Expect = 3e-45 Identities = 201/236 (85%) Strand = Plus / Minus Query: 149 cagttctgctggtgcctcatcacctgctatgcaaattaatatagtaagcatagattggct 208 ||||||||| || |||| ||||||||||||||| |||| | | |||||||||||| Sbjct: 32294223 cagttctgcaggaccctcgtcacctgctatgcaagctaatgttgccagcatagattggtc 32294164 Query: 209 gggtaacagacaggcttccagggttgattcctcatcacacgttgcaccacatgcctatgg 268 ||||| |||||| |||||||| ||||||||||||||||| ||||| || |||||| || Sbjct: 32294163 gggtagcagacaagcttccagagttgattcctcatcacatgttgctccgcatgcccatca 32294104 Query: 269 gcctgctcatagctttgatgctgctggaactgctttggattctgcaccatcttgtagacc 328 |||| ||||||| || ||||| ||||||||||||||||||||||||| || ||||| || Sbjct: 32294103 gccttctcatagtttcgatgccactggaactgctttggattctgcaccgtcatgtaggcc 32294044 Query: 329 atgggagcgtggagacttacttcgtcgactggcaacattcaaaccttcaacttggg 384 |||||| || |||||||||||||||||||||||||||| || ||| ||||||||| Sbjct: 32294043 atgggaacgcggagacttacttcgtcgactggcaacatataagcctacaacttggg 32293988 Score = 81.8 bits (41), Expect = 2e-12 Identities = 44/45 (97%) Strand = Plus / Minus Query: 58 tgcgggaggaggtcaggagctcgtcgggggcggcggccgagccgc 102 ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 32295023 tgcgggaggaggtgaggagctcgtcgggggcggcggccgagccgc 32294979 Score = 58.0 bits (29), Expect = 3e-05 Identities = 82/97 (84%), Gaps = 2/97 (2%) Strand = Plus / Minus Query: 397 aggctgctagttcattagcttgttctcaaagaggctgggtaaatgttgatattggacaaa 456 ||||||||||||| || |||||| ||| ||||| ||||| || ||||| || ||||||| Sbjct: 32293368 aggctgctagttctttggcttgtgctcggagaggttgggttaacgttgacat-ggacaaa 32293310 Query: 457 -ttgaatgtgaatcatgtggtgcgcatcttatattca 492 ||||||| || ||||||||||| ||||| ||||||| Sbjct: 32293309 attgaatgcgagtcatgtggtgcacatctcatattca 32293273 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 tcgtcgtcgccgccgcccacc 140 ||||||||||||||||||||| Sbjct: 30076743 tcgtcgtcgccgccgcccacc 30076723 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 cgtccggtcgtcgtcgccgccgcc 136 |||| ||||||||||||||||||| Sbjct: 34592191 cgtctggtcgtcgtcgccgccgcc 34592168
>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence Length = 102751 Score = 190 bits (96), Expect = 3e-45 Identities = 201/236 (85%) Strand = Plus / Minus Query: 149 cagttctgctggtgcctcatcacctgctatgcaaattaatatagtaagcatagattggct 208 ||||||||| || |||| ||||||||||||||| |||| | | |||||||||||| Sbjct: 27990 cagttctgcaggaccctcgtcacctgctatgcaagctaatgttgccagcatagattggtc 27931 Query: 209 gggtaacagacaggcttccagggttgattcctcatcacacgttgcaccacatgcctatgg 268 ||||| |||||| |||||||| ||||||||||||||||| ||||| || |||||| || Sbjct: 27930 gggtagcagacaagcttccagagttgattcctcatcacatgttgctccgcatgcccatca 27871 Query: 269 gcctgctcatagctttgatgctgctggaactgctttggattctgcaccatcttgtagacc 328 |||| ||||||| || ||||| ||||||||||||||||||||||||| || ||||| || Sbjct: 27870 gccttctcatagtttcgatgccactggaactgctttggattctgcaccgtcatgtaggcc 27811 Query: 329 atgggagcgtggagacttacttcgtcgactggcaacattcaaaccttcaacttggg 384 |||||| || |||||||||||||||||||||||||||| || ||| ||||||||| Sbjct: 27810 atgggaacgcggagacttacttcgtcgactggcaacatataagcctacaacttggg 27755 Score = 81.8 bits (41), Expect = 2e-12 Identities = 44/45 (97%) Strand = Plus / Minus Query: 58 tgcgggaggaggtcaggagctcgtcgggggcggcggccgagccgc 102 ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 28790 tgcgggaggaggtgaggagctcgtcgggggcggcggccgagccgc 28746 Score = 58.0 bits (29), Expect = 3e-05 Identities = 82/97 (84%), Gaps = 2/97 (2%) Strand = Plus / Minus Query: 397 aggctgctagttcattagcttgttctcaaagaggctgggtaaatgttgatattggacaaa 456 ||||||||||||| || |||||| ||| ||||| ||||| || ||||| || ||||||| Sbjct: 27135 aggctgctagttctttggcttgtgctcggagaggttgggttaacgttgacat-ggacaaa 27077 Query: 457 -ttgaatgtgaatcatgtggtgcgcatcttatattca 492 ||||||| || ||||||||||| ||||| ||||||| Sbjct: 27076 attgaatgcgagtcatgtggtgcacatctcatattca 27040
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 190 bits (96), Expect = 3e-45 Identities = 201/236 (85%) Strand = Plus / Minus Query: 149 cagttctgctggtgcctcatcacctgctatgcaaattaatatagtaagcatagattggct 208 ||||||||| || |||| ||||||||||||||| |||| | | |||||||||||| Sbjct: 32384733 cagttctgcaggaccctcgtcacctgctatgcaagctaatgttgccagcatagattggtc 32384674 Query: 209 gggtaacagacaggcttccagggttgattcctcatcacacgttgcaccacatgcctatgg 268 ||||| |||||| |||||||| ||||||||||||||||| ||||| || |||||| || Sbjct: 32384673 gggtagcagacaagcttccagagttgattcctcatcacatgttgctccgcatgcccatca 32384614 Query: 269 gcctgctcatagctttgatgctgctggaactgctttggattctgcaccatcttgtagacc 328 |||| ||||||| || ||||| ||||||||||||||||||||||||| || ||||| || Sbjct: 32384613 gccttctcatagtttcgatgccactggaactgctttggattctgcaccgtcatgtaggcc 32384554 Query: 329 atgggagcgtggagacttacttcgtcgactggcaacattcaaaccttcaacttggg 384 |||||| || |||||||||||||||||||||||||||| || ||| ||||||||| Sbjct: 32384553 atgggaacgcggagacttacttcgtcgactggcaacatataagcctacaacttggg 32384498 Score = 81.8 bits (41), Expect = 2e-12 Identities = 44/45 (97%) Strand = Plus / Minus Query: 58 tgcgggaggaggtcaggagctcgtcgggggcggcggccgagccgc 102 ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 32385533 tgcgggaggaggtgaggagctcgtcgggggcggcggccgagccgc 32385489 Score = 58.0 bits (29), Expect = 3e-05 Identities = 82/97 (84%), Gaps = 2/97 (2%) Strand = Plus / Minus Query: 397 aggctgctagttcattagcttgttctcaaagaggctgggtaaatgttgatattggacaaa 456 ||||||||||||| || |||||| ||| ||||| ||||| || ||||| || ||||||| Sbjct: 32383878 aggctgctagttctttggcttgtgctcggagaggttgggttaacgttgacat-ggacaaa 32383820 Query: 457 -ttgaatgtgaatcatgtggtgcgcatcttatattca 492 ||||||| || ||||||||||| ||||| ||||||| Sbjct: 32383819 attgaatgcgagtcatgtggtgcacatctcatattca 32383783 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 tcgtcgtcgccgccgcccacc 140 ||||||||||||||||||||| Sbjct: 30168315 tcgtcgtcgccgccgcccacc 30168295 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 cgtccggtcgtcgtcgccgccgcc 136 |||| ||||||||||||||||||| Sbjct: 34682263 cgtctggtcgtcgtcgccgccgcc 34682240
>ref|XM_476650.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3250 Score = 131 bits (66), Expect = 2e-27 Identities = 152/178 (85%), Gaps = 2/178 (1%) Strand = Plus / Plus Query: 314 accatcttgtagaccatgggagcgtggagacttacttcgtcgactggcaacattcaaacc 373 ||||||||||||||||||||| || |||||||| ||||| |||||||| |||||||| | Sbjct: 323 accatcttgtagaccatgggaacgaggagacttgcttcggcgactggccacattcaagtc 382 Query: 374 ttcaacttgggatgctaagccgaaggctgctagttcattagcttgttctcaaagaggctg 433 |||||| |||| | ||||||| ||||||||||||||| | |||||| ||| ||||||||| Sbjct: 383 ttcaacatgggcttctaagccaaaggctgctagttcactggcttgtgctcgaagaggctg 442 Query: 434 ggtaaatgttgatattggac-aaattgaatgtgaatcatgtggtgcgcatcttatatt 490 ||| || |||| | ||||| |||||| ||| || |||||||| || ||||||||||| Sbjct: 443 ggtgaacattga-aatggacaaaattgcatgcgagtcatgtggagcacatcttatatt 499
>dbj|AK073749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070M17, full insert sequence Length = 3250 Score = 131 bits (66), Expect = 2e-27 Identities = 152/178 (85%), Gaps = 2/178 (1%) Strand = Plus / Plus Query: 314 accatcttgtagaccatgggagcgtggagacttacttcgtcgactggcaacattcaaacc 373 ||||||||||||||||||||| || |||||||| ||||| |||||||| |||||||| | Sbjct: 323 accatcttgtagaccatgggaacgaggagacttgcttcggcgactggccacattcaagtc 382 Query: 374 ttcaacttgggatgctaagccgaaggctgctagttcattagcttgttctcaaagaggctg 433 |||||| |||| | ||||||| ||||||||||||||| | |||||| ||| ||||||||| Sbjct: 383 ttcaacatgggcttctaagccaaaggctgctagttcactggcttgtgctcgaagaggctg 442 Query: 434 ggtaaatgttgatattggac-aaattgaatgtgaatcatgtggtgcgcatcttatatt 490 ||| || |||| | ||||| |||||| ||| || |||||||| || ||||||||||| Sbjct: 443 ggtgaacattga-aatggacaaaattgcatgcgagtcatgtggagcacatcttatatt 499
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Minus Query: 314 accatcttgtagaccatgggagcgtggagacttacttcgtcgactggcaacattcaaacc 373 ||||||||||||||||||||| || |||||||| ||||| |||||||| |||||||| | Sbjct: 2671434 accatcttgtagaccatgggaacgaggagacttgcttcggcgactggccacattcaagtc 2671375 Query: 374 ttcaacttgggatgctaagccgaagg 399 |||||| |||| | ||||||| |||| Sbjct: 2671374 ttcaacatgggcttctaagccaaagg 2671349 Score = 54.0 bits (27), Expect = 4e-04 Identities = 80/95 (84%), Gaps = 2/95 (2%) Strand = Plus / Minus Query: 397 aggctgctagttcattagcttgttctcaaagaggctgggtaaatgttgatattggac-aa 455 |||||||||||||| | |||||| ||| |||||||||||| || |||| | ||||| || Sbjct: 2670669 aggctgctagttcactggcttgtgctcgaagaggctgggtgaacattga-aatggacaaa 2670611 Query: 456 attgaatgtgaatcatgtggtgcgcatcttatatt 490 |||| ||| || |||||||| || ||||||||||| Sbjct: 2670610 attgcatgcgagtcatgtggagcacatcttatatt 2670576
>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1027_G06 Length = 121885 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Minus Query: 314 accatcttgtagaccatgggagcgtggagacttacttcgtcgactggcaacattcaaacc 373 ||||||||||||||||||||| || |||||||| ||||| |||||||| |||||||| | Sbjct: 97152 accatcttgtagaccatgggaacgaggagacttgcttcggcgactggccacattcaagtc 97093 Query: 374 ttcaacttgggatgctaagccgaagg 399 |||||| |||| | ||||||| |||| Sbjct: 97092 ttcaacatgggcttctaagccaaagg 97067 Score = 54.0 bits (27), Expect = 4e-04 Identities = 80/95 (84%), Gaps = 2/95 (2%) Strand = Plus / Minus Query: 397 aggctgctagttcattagcttgttctcaaagaggctgggtaaatgttgatattggac-aa 455 |||||||||||||| | |||||| ||| |||||||||||| || |||| | ||||| || Sbjct: 96387 aggctgctagttcactggcttgtgctcgaagaggctgggtgaacattga-aatggacaaa 96329 Query: 456 attgaatgtgaatcatgtggtgcgcatcttatatt 490 |||| ||| || |||||||| || ||||||||||| Sbjct: 96328 attgcatgcgagtcatgtggagcacatcttatatt 96294
>gb|AC015688.11| Homo sapiens chromosome 17, clone RP11-19P22, complete sequence Length = 152351 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 266 tgggcctgctcatagctttgatgctgctgg 295 ||||||||||||| |||||| ||||||||| Sbjct: 77109 tgggcctgctcatggctttgttgctgctgg 77138
>ref|XM_475198.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1806 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 agctcgtcgggggcggcggcc 95 ||||||||||||||||||||| Sbjct: 131 agctcgtcgggggcggcggcc 151
>ref|XM_469663.1| Oryza sativa (japonica cultivar-group), mRNA Length = 513 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 tcgtcgtcgccgccgcccacc 140 ||||||||||||||||||||| Sbjct: 251 tcgtcgtcgccgccgcccacc 231
>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10, complete sequence Length = 156772 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 cgccgtcgtccggtcgtcgtcgccg 131 ||||||||||| ||||||||||||| Sbjct: 53918 cgccgtcgtcccgtcgtcgtcgccg 53894
>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21, complete sequence Length = 151267 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 agctcgtcgggggcggcggcc 95 ||||||||||||||||||||| Sbjct: 91058 agctcgtcgggggcggcggcc 91038
>gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic sequence, complete sequence Length = 163972 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 120 tcgtcgtcgccgccgcccacc 140 ||||||||||||||||||||| Sbjct: 147152 tcgtcgtcgccgccgcccacc 147172
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 120 tcgtcgtcgccgccgcccacc 140 ||||||||||||||||||||| Sbjct: 30858 tcgtcgtcgccgccgcccacc 30878
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 88 cggcggccgagccgcaggtcgccgt 112 |||||||| |||||||||||||||| Sbjct: 3529191 cggcggccaagccgcaggtcgccgt 3529167
>gb|AC069549.5| Homo sapiens chromosome 10 clone RP11-575A19, complete sequence Length = 170554 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 ttggctgggtaacagacaggc 223 ||||||||||||||||||||| Sbjct: 156191 ttggctgggtaacagacaggc 156211
>gb|AC137589.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0072L08, complete sequence Length = 152272 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gtcgtcgtcgccgccgcccac 139 ||||||||||||||||||||| Sbjct: 73758 gtcgtcgtcgccgccgcccac 73778
>gb|AC144558.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0072L08, sequencing in progress, complete sequence Length = 152272 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gtcgtcgtcgccgccgcccac 139 ||||||||||||||||||||| Sbjct: 73758 gtcgtcgtcgccgccgcccac 73778
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 116 ccggtcgtcgtcgccgccgcc 136 ||||||||||||||||||||| Sbjct: 9064357 ccggtcgtcgtcgccgccgcc 9064337
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gtcgtcgtcgccgccgcccac 139 ||||||||||||||||||||| Sbjct: 21071443 gtcgtcgtcgccgccgcccac 21071463
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 agctcgtcgggggcggcggcc 95 ||||||||||||||||||||| Sbjct: 19169160 agctcgtcgggggcggcggcc 19169140 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 cgccgtcgtccggtcgtcgtcgccg 131 ||||||||||| ||||||||||||| Sbjct: 4167439 cgccgtcgtcccgtcgtcgtcgccg 4167415
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 tcgtcgtcgccgccgcccacc 140 ||||||||||||||||||||| Sbjct: 12640654 tcgtcgtcgccgccgcccacc 12640634 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 107 cgccgtcgtccggtcgtcgtcgccgccg 134 ||||||||||| |||||||||| ||||| Sbjct: 4483425 cgccgtcgtccagtcgtcgtcgtcgccg 4483398
>dbj|AP004024.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1134_B09 Length = 105247 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 tcgtcgtcgccgccgcccacc 140 ||||||||||||||||||||| Sbjct: 37713 tcgtcgtcgccgccgcccacc 37693
>dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0572D06 Length = 148920 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 tcgtcgtcgccgccgcccacc 140 ||||||||||||||||||||| Sbjct: 145187 tcgtcgtcgccgccgcccacc 145167
>dbj|AK103197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122A02, full insert sequence Length = 1058 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 107 cgccgtcgtccggtcgtcgtcgccg 131 ||||||||||| ||||||||||||| Sbjct: 274 cgccgtcgtcccgtcgtcgtcgccg 298
>dbj|AK100181.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030B10, full insert sequence Length = 2205 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 agctcgtcgggggcggcggcc 95 ||||||||||||||||||||| Sbjct: 194 agctcgtcgggggcggcggcc 214
>dbj|AK069649.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030B11, full insert sequence Length = 2205 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 agctcgtcgggggcggcggcc 95 ||||||||||||||||||||| Sbjct: 194 agctcgtcgggggcggcggcc 214
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 gtcgtcgtcgccgccgcccac 139 ||||||||||||||||||||| Sbjct: 21381684 gtcgtcgtcgccgccgcccac 21381704
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 116 ccggtcgtcgtcgccgccgcc 136 ||||||||||||||||||||| Sbjct: 9064242 ccggtcgtcgtcgccgccgcc 9064222
>emb|AL844496.4|CNS08CAT Oryza sativa chromosome 12, . BAC OSJNBb0026N09 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135462 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 116 ccggtcgtcgtcgccgccgcc 136 ||||||||||||||||||||| Sbjct: 133126 ccggtcgtcgtcgccgccgcc 133106
>emb|AL713903.5|CNS07YQ3 Oryza sativa chromosome 12, . BAC OJ1471_C07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103007 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 ccggtcgtcgtcgccgccgcc 136 ||||||||||||||||||||| Sbjct: 53736 ccggtcgtcgtcgccgccgcc 53756
>ref|NM_185089.1| Oryza sativa (japonica cultivar-group), mRNA Length = 546 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 cgtccggtcgtcgtcgccgccgcc 136 |||| ||||||||||||||||||| Sbjct: 19 cgtctggtcgtcgtcgccgccgcc 42
>ref|XM_464325.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1266 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 107 cgccgtcgtccggtcgtcgtcgccgccg 134 ||||||||||| |||||||||| ||||| Sbjct: 1224 cgccgtcgtccagtcgtcgtcgtcgccg 1197
>ref|XM_463623.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1182 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 cggtcgtcgtcgccgccgcc 136 |||||||||||||||||||| Sbjct: 566 cggtcgtcgtcgccgccgcc 585
>emb|Z83318.1|CEF55B11 Caenorhabditis elegans Cosmid F55B11, complete sequence Length = 33359 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ttgatattggacaaattgaa 461 |||||||||||||||||||| Sbjct: 1796 ttgatattggacaaattgaa 1777
>emb|CR726813.2|CNS0GNR7 Tetraodon nigroviridis full-length cDNA Length = 1453 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ggtcgtcgtcgccgccgccc 137 |||||||||||||||||||| Sbjct: 363 ggtcgtcgtcgccgccgccc 344
>emb|AL139239.18| Human DNA sequence from clone RP11-19C6 on chromosome 10 Contains the 5' end of the CRTAC1 gene for cartilage acidic protein 1 and two CpG islands, complete sequence Length = 161235 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 tcgccgccgcccaccccggtggcc 149 ||||||||||||||||| |||||| Sbjct: 160325 tcgccgccgcccaccccagtggcc 160302
>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete sequence Length = 164236 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 cgtccggtcgtcgtcgccgccgcc 136 |||| ||||||||||||||||||| Sbjct: 49908 cgtctggtcgtcgtcgccgccgcc 49885
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 cgccgtcgtccggtcgtcgt 126 |||||||||||||||||||| Sbjct: 1504377 cgccgtcgtccggtcgtcgt 1504396
>emb|CR548612.1| Paramecium tetraurelia macronuclear largest chromosome, complete sequence Length = 984602 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 tatgcaaattaatatagtaa 195 |||||||||||||||||||| Sbjct: 924474 tatgcaaattaatatagtaa 924493
>emb|AL445065.1|TACID3 Thermoplasma acidophilum complete genome; segment 3/5 Length = 316900 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 gttctcaaagaggctgggta 437 |||||||||||||||||||| Sbjct: 230416 gttctcaaagaggctgggta 230435
>emb|AL646046.8| Mouse DNA sequence from clone RP23-101M12 on chromosome 11, complete sequence Length = 214665 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 caaagaggctgggtaaatgt 442 |||||||||||||||||||| Sbjct: 65135 caaagaggctgggtaaatgt 65154
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 ccaccccggtggccagttctgctg 159 |||||| ||||||||||||||||| Sbjct: 2792491 ccacccaggtggccagttctgctg 2792468
>dbj|AK138499.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330042P03 product:syntaxin binding protein 4, full insert sequence Length = 2952 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 caaagaggctgggtaaatgt 442 |||||||||||||||||||| Sbjct: 2874 caaagaggctgggtaaatgt 2855
>gb|AC087380.3| Homo sapiens chromosome 11, clone RP11-454O22, complete sequence Length = 200723 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 aacattcaaaccttcaactt 381 |||||||||||||||||||| Sbjct: 15992 aacattcaaaccttcaactt 15973
>gb|AF391800.1|AF391800 Homo sapiens aortic aneurysm antigenic protein clone 4 mRNA, partial cds Length = 198 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 ctgggtaacagacaggcttccagg 230 |||| ||||||||||||||||||| Sbjct: 69 ctggttaacagacaggcttccagg 46
>ref|NM_070346.2| Caenorhabditis elegans F55B11.1 (F55B11.1) mRNA, complete cds Length = 4126 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 442 ttgatattggacaaattgaa 461 |||||||||||||||||||| Sbjct: 3653 ttgatattggacaaattgaa 3672
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 cggtcgtcgtcgccgccgcc 136 |||||||||||||||||||| Sbjct: 40135199 cggtcgtcgtcgccgccgcc 40135180 Score = 40.1 bits (20), Expect = 6.7 Identities = 35/39 (89%), Gaps = 2/39 (5%) Strand = Plus / Plus Query: 98 gccgcaggtcgccgtcgtccggtcgtcgtcgccgccgcc 136 ||||| ||||||||||||| ||||||| |||||||||| Sbjct: 38884500 gccgctggtcgccgtcgtc--gtcgtcgccgccgccgcc 38884536 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 435 gtaaatgttgatattggacaaattgaat 462 |||||||||||||||| |||||| |||| Sbjct: 23856770 gtaaatgttgatattgcacaaatagaat 23856797
>gb|AF137396.2|AF137396 Homo sapiens ubiquilin 3, HOR 5'Beta14, HOR5'Beta13, HOR5'Beta12, and HOR5'Beta11 genes, complete cds; HOR 5'Beta10 and HOR5'Beta9 pseudogenes, complete sequence; HOR5'Beta8 and HOR5'Beta7 genes, complete cds; CHR11ORF1 and amphiphysin pseudogenes, complete sequence; HOR5'Beta6 and HOR5'Beta5 genes, complete cds; HOR5'Beta4 pseudogene, complete sequence; HOR 5'Beta3 genes, complete cds; HOR5'Beta2 pseudogene, complete sequence; and HOR 5'Beta1 gene, complete cds Length = 219955 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 aacattcaaaccttcaactt 381 |||||||||||||||||||| Sbjct: 142569 aacattcaaaccttcaactt 142588
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0678F11 Length = 154292 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 cggtcgtcgtcgccgccgcc 136 |||||||||||||||||||| Sbjct: 78283 cggtcgtcgtcgccgccgcc 78264
>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1078G07 Length = 199457 Score = 40.1 bits (20), Expect = 6.7 Identities = 35/39 (89%), Gaps = 2/39 (5%) Strand = Plus / Plus Query: 98 gccgcaggtcgccgtcgtccggtcgtcgtcgccgccgcc 136 ||||| ||||||||||||| ||||||| |||||||||| Sbjct: 157382 gccgctggtcgccgtcgtc--gtcgtcgccgccgccgcc 157418
>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1793G04 Length = 156714 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 cggtcgtcgtcgccgccgcc 136 |||||||||||||||||||| Sbjct: 977 cggtcgtcgtcgccgccgcc 958
>gb|AC007131.4| Homo sapiens BAC clone RP11-179A20 from 2, complete sequence Length = 160087 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 caaattaatatagtaagcat 199 |||||||||||||||||||| Sbjct: 9470 caaattaatatagtaagcat 9451
>gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete sequence Length = 129302 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 cgtccggtcgtcgtcgccgccgcc 136 |||| ||||||||||||||||||| Sbjct: 51142 cgtctggtcgtcgtcgccgccgcc 51165
>gb|AC104389.8| Homo sapiens chromosome 11, clone CTD-2643I7, complete sequence Length = 207343 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 aacattcaaaccttcaactt 381 |||||||||||||||||||| Sbjct: 172596 aacattcaaaccttcaactt 172577
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 gtccggtcgtcgtcgccgccgccc 137 ||||||||| |||||||||||||| Sbjct: 3302897 gtccggtcgccgtcgccgccgccc 3302920
>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0704D04 Length = 147638 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 435 gtaaatgttgatattggacaaattgaat 462 |||||||||||||||| |||||| |||| Sbjct: 3174 gtaaatgttgatattgcacaaatagaat 3201
>dbj|AP003022.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0681B11 Length = 144091 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 435 gtaaatgttgatattggacaaattgaat 462 |||||||||||||||| |||||| |||| Sbjct: 137355 gtaaatgttgatattgcacaaatagaat 137382
>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0696G06 Length = 142571 Score = 40.1 bits (20), Expect = 6.7 Identities = 35/39 (89%), Gaps = 2/39 (5%) Strand = Plus / Plus Query: 98 gccgcaggtcgccgtcgtccggtcgtcgtcgccgccgcc 136 ||||| ||||||||||||| ||||||| |||||||||| Sbjct: 49286 gccgctggtcgccgtcgtc--gtcgtcgccgccgccgcc 49322
>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1297_C09 Length = 163378 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 107 cgccgtcgtccggtcgtcgtcgccgccg 134 ||||||||||| |||||||||| ||||| Sbjct: 18804 cgccgtcgtccagtcgtcgtcgtcgccg 18777
>dbj|AK109894.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-E11, full insert sequence Length = 699 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 cgtccggtcgtcgtcgccgccgcc 136 |||| ||||||||||||||||||| Sbjct: 49 cgtctggtcgtcgtcgccgccgcc 72
>dbj|AK103300.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125C09, full insert sequence Length = 933 Score = 40.1 bits (20), Expect = 6.7 Identities = 35/39 (89%), Gaps = 2/39 (5%) Strand = Plus / Plus Query: 98 gccgcaggtcgccgtcgtccggtcgtcgtcgccgccgcc 136 ||||| ||||||||||||| ||||||| |||||||||| Sbjct: 92 gccgctggtcgccgtcgtc--gtcgtcgccgccgccgcc 128
>dbj|AK066552.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074K05, full insert sequence Length = 1419 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 cggtcgtcgtcgccgccgcc 136 |||||||||||||||||||| Sbjct: 682 cggtcgtcgtcgccgccgcc 701
>dbj|AB216377.1| Equus caballus DNA, microsatellite TKY2434 Length = 231 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 aaggctgctagttcattagc 415 |||||||||||||||||||| Sbjct: 214 aaggctgctagttcattagc 195 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,460,282 Number of Sequences: 3902068 Number of extensions: 4460282 Number of successful extensions: 96896 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 95234 Number of HSP's gapped (non-prelim): 1674 length of query: 492 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 470 effective length of database: 17,147,199,772 effective search space: 8059183892840 effective search space used: 8059183892840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
