ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl01c07 |
|---|---|
| Clone Library Name | barley_pub |
>CU087_HUMAN (P59051) Protein C21orf87| Length = 145 Score = 33.1 bits (74), Expect = 0.30 Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 10/34 (29%) Frame = +2 Query: 107 WRWPSRQPSLPTASPTRTP----------LPGTW 178 W PSRQP L A PTRTP LPG W Sbjct: 4 WIQPSRQPQLRAAPPTRTPSAKRCILCNFLPGCW 37
>CAC1H_RAT (Q9EQ60) Voltage-dependent T-type calcium channel alpha-1H subunit| (Voltage-gated calcium channel alpha subunit Cav3.2) Length = 2359 Score = 30.8 bits (68), Expect = 1.5 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +2 Query: 113 WPSRQPSLPTASPTRTPLPGT 175 WP+ +P P ASPT +P+ GT Sbjct: 2108 WPATEPHSPEASPTASPVKGT 2128
>HRJ97_HUMAN (Q86Y56) Heat repeats-containing protein FLJ20397| Length = 855 Score = 30.0 bits (66), Expect = 2.5 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Frame = +1 Query: 226 ELVPRLAELRADEAGPVRKLVAEMIGE----IGSKHTVFIPDMMPSLLDLLNDETPAVAR 393 +++ A+ D+ VR+ VA ++G + +++ F ++P LL LNDE P V + Sbjct: 245 DVLSHFAQRLFDDVPQVRRAVASVVGGWLLCLRDRYS-FFHKLIPLLLSSLNDEVPEVRQ 303 Query: 394 QAVNTGTDL 420 A + D+ Sbjct: 304 LAASLWEDV 312
>CAC1H_MOUSE (O88427) Voltage-dependent T-type calcium channel alpha-1H subunit| (Voltage-gated calcium channel alpha subunit Cav3.2) Length = 2365 Score = 30.0 bits (66), Expect = 2.5 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 113 WPSRQPSLPTASPTRTPLPGT 175 WP+ +P P ASPT +P GT Sbjct: 2114 WPATEPHSPEASPTASPAKGT 2134
>MUCDL_RAT (Q9JIK1) Mucin and cadherin-like protein precursor| (Mu-protocadherin) (GP100) Length = 862 Score = 29.6 bits (65), Expect = 3.3 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = +2 Query: 71 PGIAGARVPTARWRWPSRQPSLPTASPTRTPLPGT 175 PG + VPT S QP+ P+ S T+TP PGT Sbjct: 581 PGTSQPMVPTPGAS-TSSQPATPSGSSTQTPRPGT 614 Score = 29.6 bits (65), Expect = 3.3 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = +2 Query: 71 PGIAGARVPTARWRWPSRQPSLPTASPTRTPLPGT 175 PG + VPT S QP+ P+ S T+TP PGT Sbjct: 550 PGTSQPMVPTPGAS-TSSQPATPSGSSTQTPKPGT 583
>GSH1_BRAJU (O23736) Glutamate--cysteine ligase, chloroplast precursor (EC| 6.3.2.2) (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS) Length = 514 Score = 29.3 bits (64), Expect = 4.3 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +1 Query: 238 RLAELRADEAGPVRKLVAEMIGEIGSKHTVFIPDMMPSLLDLLNDETPA 384 R E+R + GP R+L A +G ++ D++ S+LDL D TPA Sbjct: 382 RYMEMRGADGGPWRRLCALPAFWVG---LLYDEDVLQSVLDLTADWTPA 427
>CSKI1_MOUSE (Q6P9K8) Caskin-1 (CASK-interacting protein 1)| Length = 1431 Score = 28.9 bits (63), Expect = 5.7 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = +2 Query: 50 SQPGRASPGIAGARVPTARWRWPSRQPSLPTASPTRTPLPGT 175 S SP + AR P A P+ P +ASP + P PGT Sbjct: 1294 SSSATPSPVPSPARQPPAALIKPASSPPSQSASPVKPPSPGT 1335
>FRHG_METVO (Q00393) Coenzyme F420 hydrogenase gamma subunit (EC 1.12.98.1)| (8-hydroxy-5-deazaflavin-reducing hydrogenase gamma subunit) (FRH) Length = 243 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/44 (40%), Positives = 24/44 (54%) Frame = -2 Query: 425 ANKSVPVLTACLATAGVSSFRRSSREGIMSGINTVCFDPISPII 294 + KS+ L AC A+ GV+ FR R G MS + F PI +I Sbjct: 92 SKKSLVALGACAASGGVTRFR---RVGQMSQPSHASFVPIGDVI 132
>GIDA_BACHD (Q9RCA8) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 632 Score = 28.5 bits (62), Expect = 7.4 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -2 Query: 431 TLANKSVPVLTACLATAGVSSFRRSSREGIMSGIN 327 TL K VP L G S + ++ +GIM+GIN Sbjct: 356 TLETKKVPGLFTAGQINGTSGYEEAAGQGIMAGIN 390
>TOR1_SCHPO (O14356) Phosphatidylinositol 3-kinase tor1 (EC 2.7.1.137)| (PtdIns-3-kinase tor1) (PI3-kinase tor1) (PI3K tor1) Length = 2335 Score = 28.5 bits (62), Expect = 7.4 Identities = 11/31 (35%), Positives = 21/31 (67%) Frame = +1 Query: 274 VRKLVAEMIGEIGSKHTVFIPDMMPSLLDLL 366 V + V + ++GSK TVF+P ++P+ L ++ Sbjct: 826 VVQAVMHICSQMGSKSTVFLPQVVPTFLQVM 856
>PKNH_MYCTU (Q11053) Probable serine/threonine-protein kinase pknH (EC| 2.7.11.1) Length = 626 Score = 28.1 bits (61), Expect = 9.7 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = +2 Query: 47 YSQPGRASPGIAGARV-PTARWRWPSRQPSLPTASPTRTP 163 Y+ P A PG AG R PT + W +P + PT TP Sbjct: 336 YTPP--AQPGPAGQRPGPTGQPSWAPNSGPMPASGPTPTP 373
>2AAB_HUMAN (P30154) Serine/threonine-protein phosphatase 2A 65 kDa regulatory| subunit A beta isoform (PP2A, subunit A, PR65-beta isoform) (PP2A, subunit A, R1-beta isoform) Length = 601 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 6/60 (10%) Frame = +1 Query: 211 RLPLHELVPRLAELRADEAGPVRKLVAEMIGEIG------SKHTVFIPDMMPSLLDLLND 372 ++ L++L+P L D VR A + E+G + T+ + ++P + +L++D Sbjct: 289 KITLNDLIPAFQNLLKDCEAEVRAAAAHKVKELGENLPIEDRETIIMNQILPYIKELVSD 348
>GIDA_BACLD (Q65CN2) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 628 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -2 Query: 431 TLANKSVPVLTACLATAGVSSFRRSSREGIMSGIN 327 TL K +P L G S + ++ +GIM+GIN Sbjct: 356 TLETKKIPGLFTAGQINGTSGYEEAAGQGIMAGIN 390
>MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 845 Score = 28.1 bits (61), Expect = 9.7 Identities = 16/49 (32%), Positives = 21/49 (42%) Frame = +2 Query: 29 GGRNHHYSQPGRASPGIAGARVPTARWRWPSRQPSLPTASPTRTPLPGT 175 GG +PG + P G T S QP+ P+ +TP PGT Sbjct: 536 GGDTAQTPKPGTSQPMPPGVGTST------SHQPATPSGGTVQTPEPGT 578
>TOR2_SCHPO (Q9Y7K2) Phosphatidylinositol 3-kinase tor2 (EC 2.7.1.137)| (PtdIns-3-kinase tor2) (PI3-kinase tor2) (PI3K tor2) Length = 2337 Score = 28.1 bits (61), Expect = 9.7 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 5/65 (7%) Frame = +1 Query: 187 LLQVRGLRRLP-LHELVPRLAELRADEAGPVRKLVA-EMIGEIGSKHTVFIPD---MMPS 351 + Q+ G +P + +L+P + E D++ P+R+ A + +G + S T ++ D PS Sbjct: 673 ICQISGEVIVPFIKDLMPLIIEALQDQSSPIRRAAALKALGNLSSS-TGYVIDPYIEFPS 731 Query: 352 LLDLL 366 LLD+L Sbjct: 732 LLDIL 736
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 28.1 bits (61), Expect = 9.7 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 7/53 (13%) Frame = +2 Query: 8 KQKKVLRGGRNHHYSQPGRA----SPGIAG---ARVPTARWRWPSRQPSLPTA 145 K +K +HH+ PGR SPG++ R P AR R P+R P+L A Sbjct: 2212 KDRKHRPHHHHHHHHHPGRGPGRVSPGVSARRRRRGPVARVR-PARAPALAHA 2263 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,702,780 Number of Sequences: 219361 Number of extensions: 640974 Number of successful extensions: 2814 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2649 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2804 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
