ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl01c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CN032_MOUSE (Q8BH93) Protein C14orf32 homolog 32 0.93
2BDBB_BPSPC (P68572) Disulfide bond formation protein B (Disulfid... 29 7.8
3BDBB_BACSU (P68571) SPBc2 prophage-derived disulfide bond format... 29 7.8
4UL14_HHV11 (P04291) Hypothetical UL14 protein 29 7.8

>CN032_MOUSE (Q8BH93) Protein C14orf32 homolog|
          Length = 242

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 202 PSPSPWEAPASDPEMASGLADSSDDPS 122
           P  SPW  P++ P M SGL  SS  PS
Sbjct: 35  PGSSPWSNPSAPPAMPSGLPPSSAAPS 61



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>BDBB_BPSPC (P68572) Disulfide bond formation protein B (Disulfide|
           oxidoreductase B) (Thiol-disulfide oxidoreductase B)
          Length = 148

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 301 RMLFPLVFFSQIMITTSQIH*SKLRHFKLSFCGWYTGLDCLPVPM 435
           +  F L+FF     T + +  S++ HFK     WY  +   P+P+
Sbjct: 7   KSFFLLLFFLSFFGTMASLFYSEIMHFKPCVLCWYQRIFLYPIPI 51



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>BDBB_BACSU (P68571) SPBc2 prophage-derived disulfide bond formation protein B|
           (Disulfide oxidoreductase B) (Thiol-disulfide
           oxidoreductase B)
          Length = 148

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 301 RMLFPLVFFSQIMITTSQIH*SKLRHFKLSFCGWYTGLDCLPVPM 435
           +  F L+FF     T + +  S++ HFK     WY  +   P+P+
Sbjct: 7   KSFFLLLFFLSFFGTMASLFYSEIMHFKPCVLCWYQRIFLYPIPI 51



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>UL14_HHV11 (P04291) Hypothetical UL14 protein|
          Length = 219

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 202 PSPSPWEAPASDPEMASGLADSSDD 128
           PSP+P   PA+DP  ASG A    D
Sbjct: 193 PSPAPPTGPATDPASASGFARDYPD 217


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,665,198
Number of Sequences: 219361
Number of extensions: 1059640
Number of successful extensions: 3679
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3670
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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