>NFAC4_HUMAN (Q14934) Nuclear factor of activated T-cells, cytoplasmic 4|
           (NF-ATc4) (NFATc4) (T cell transcription factor NFAT3)
           (NF-AT3)
          Length = 902

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 33/103 (32%), Positives = 39/103 (37%), Gaps = 9/103 (8%)
 Frame = +3

Query: 129 PQPGGSSLHSPGFLLQPPDLARSTAIC------FRRAAAR---GWPLAAVDPRSAGTPSW 281
           P PG SSL S  F     D A   A C         AA+R   G PL +  PR++  P W
Sbjct: 169 PSPGSSSLSSWSFFSDASDEAALYAACDEVESELNEAASRFGLGSPLPS--PRASPRP-W 225

Query: 282 SPPVPWQSXXXXXXXXXXXXXSGAGPAVPSLWRSTRGVGPSVP 410
           +P  PW                G GP    L  S  G  P+ P
Sbjct: 226 TPEDPW--------SLYGPSPGGRGPEDSWLLLSAPGPTPASP 260

>YDIJ_ECOLI (P77748) Hypothetical protein ydiJ|
          Length = 1018

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 135 PGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDP 257
           P G + H  GFL +    A+ TA    R A  G P+  VDP
Sbjct: 826 PNGKAQHIKGFLNRFAKTAKKTADFLNRMAKLGMPMVGVDP 866

>Y1163_HAEIN (Q57252) Protein HI1163|
          Length = 1027

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 132 QPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDP 257
           +P G ++H  GFL +    A++ A    R A  G PL  VDP
Sbjct: 826 KPNGKAMHIKGFLKRFSKTAQNQAEFLNRMAKLGIPLVGVDP 867

>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556|
          Length = 348

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 29/96 (30%), Positives = 33/96 (34%)
 Frame = +3

Query: 123 PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDPRSAGTPSWSPPVPWQ 302
           PR     S   SPG  +QP   A   A C   A+  G P AA     +  P+  PP    
Sbjct: 189 PRLSRSSSETRSPGGTVQPKSPAPLAARC--SASRAGCPTAA----GSLLPAPRPP---- 238

Query: 303 SXXXXXXXXXXXXXSGAGPAVPSLWRSTRGVGPSVP 410
                           A PA PS  R  R   PS P
Sbjct: 239 -------ASSASSPQAAAPAAPSATRLPRRTTPSAP 267

>FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUSE-binding|
           protein 2) (KH type splicing regulatory protein) (KSRP)
           (p75)
          Length = 707

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = -3

Query: 440 GCAAGGPPKGGD*WTDAAGGPPKGGDCWTGAAG 342
           G A GGPP G     D  GG P GG    G+AG
Sbjct: 24  GGAGGGPPPGPPGAGDRGGGGPCGGGPGGGSAG 56

>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 443

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -1

Query: 298 QGTGGLQEG---VPADLGSTAARGHPLAAARRKQMAVERARSGG 176
           QG GG +E    V  D G+  + GHPL+ A +   A+     GG
Sbjct: 29  QGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGG 72

>ZFNL5_ARATH (Q5RJC5) Zinc finger CCCH type domain-containing protein ZFN-like 5|
          Length = 435

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 276 SWSPPVPWQSXXXXXXXXXXXXXSGAGPAVPSLWRSTRGVGP 401
           S+SP  P Q+             +G  P +PS++  +RGV P
Sbjct: 240 SFSPKAPSQASSTSWSSTRHMNGTGTAPFIPSMFPHSRGVTP 281

>UBP51_HUMAN (Q70EK9) Ubiquitin carboxyl-terminal hydrolase 51 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 51)
           (Ubiquitin-specific-processing protease 51)
           (Deubiquitinating enzyme 51)
          Length = 711

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +3

Query: 114 KP*PRPQPGGSSLHSPGFLLQPPDLAR 194
           KP PRPQP   S   PG    PP  AR
Sbjct: 103 KPRPRPQPRARSRSQPGLSAPPPPPAR 129

>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 445

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -1

Query: 298 QGTGGLQEG---VPADLGSTAARGHPLAAARRKQMAVERARSGG 176
           QG GG +E    V  D G+  + GHPL+ A +   A+     GG
Sbjct: 29  QGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGG 72

>KAPR_ASPFU (Q96UX3) cAMP-dependent protein kinase regulatory subunit (PKA|
           regulatory subunit)
          Length = 413

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
 Frame = +3

Query: 141 GSSLHSPGFLLQPPDLARSTAICFRRAAARGWP------------LAAVDPRSAGTPSWS 284
           G      G  ++PP  AR TA     AA +G+P              +++P SAG+ SW+
Sbjct: 85  GQGSEGQGEHVEPPGGARPTA-----AANQGFPNNYALGRRTSVSAESLNPTSAGSDSWT 139

Query: 285 PP 290
           PP
Sbjct: 140 PP 141

>PACC_NEUCR (Q7RVQ8) pH-response transcription factor pacC/RIM101|
          Length = 621

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 26/92 (28%), Positives = 35/92 (38%)
 Frame = +3

Query: 153 HSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDPRSAGTPSWSPPVPWQSXXXXXXXXX 332
           HSP +  +P       +I     A+   PL+A  P SAGTP+ +P               
Sbjct: 393 HSPTYATRP-------SIDPYHGASLASPLSATSPHSAGTPAVTP-----------TPSN 434

Query: 333 XXXXSGAGPAVPSLWRSTRGVGPSVPSLWRPT 428
               SG  P+  S   S      S PS+  PT
Sbjct: 435 MSYTSGHSPSTSSTSLSPTSRHSSTPSVSYPT 466

>BRO1_EMENI (Q6XPR4) Vacuolar protein-sorting protein bro1 (BRO|
           domain-containing protein 1)
          Length = 1000

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = +3

Query: 108 SAKP*PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWP-LAAVDPRSAGTPSWS 284
           S +P P   P GSS   P     PP   ++ A     A  +  P  A   P+  GTP   
Sbjct: 791 STEPKPPSVPPGSSTAGPAKAKSPPPPVKAPAYPTNIAPPKASPHFAPTVPQQHGTPVSH 850

Query: 285 PPVPW 299
            P P+
Sbjct: 851 SPAPY 855

>ADRB1_FELCA (Q9TST6) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor)
          Length = 474

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 144 SSLHSPGFLLQPPDLARS--TAICFRRAAARGWPLAAVD-PRSAG-TPSWSPP 290
           +S  +P    + PD  ++    +CF R AARG   AA D PR++G  P   PP
Sbjct: 365 NSAFNPIIYCRSPDFRKAFQRLLCFARRAARGGHAAAGDRPRASGCLPGTRPP 417

>CT055_MOUSE (Q8R184) Protein C20orf55 homolog|
          Length = 296

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
 Frame = +3

Query: 99  PFHSAKP*PRPQPGGSSLHSPGFLLQPPDLARSTAIC---FRRAAA---RGWPLAAVDPR 260
           P  ++   P P PG ++  SPG   +PP L RS +     F RAAA   R +    +DP 
Sbjct: 159 PLPASPARPYPSPGTTTTSSPG---RPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPE 215

Query: 261 SA 266
            A
Sbjct: 216 EA 217


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,038,436
Number of Sequences: 219361
Number of extensions: 967323
Number of successful extensions: 3733
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3712
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)