>SUVH1_ARATH (Q9FF80) Histone-lysine N-methyltransferase, H3 lysine-9 specific|
           SUVH1 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 1)
           (H3-K9-HMTase 1) (Suppressor of variegation 3-9 homolog
           protein 1) (Su(var)3-9 homolog protein 1) (Protein SET
           DOMAIN GR
          Length = 670

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 20/47 (42%), Positives = 24/47 (51%)
 Frame = +1

Query: 133 DYAAVLDAKPLRTLTPMFPAPLGMHTFTPKSSSSVVCVTPFGPYAGG 273
           D   VLD KPLRTL P+FP        +   +   VC  PFGP+  G
Sbjct: 10  DKTRVLDIKPLRTLRPVFP--------SGNQAPPFVCAPPFGPFPPG 48

>CPN_DROME (Q02910) Calphotin|
          Length = 864

 Score = 35.4 bits (80), Expect = 0.090
 Identities = 37/158 (23%), Positives = 55/158 (34%), Gaps = 9/158 (5%)
 Frame = +1

Query: 61  SPYLRKISCQLTMAGNQQPASVVLDYA---------AVLDAKPLRTLTPMFPAPLGMHTF 213
           SP    ++  +T +    P  VV   A         AV    P  TL  + PA + +   
Sbjct: 8   SPVSAPVAAPVTPSAVAAPVQVVSPAAVAPAPAAPIAVTPVAPPPTLASVQPATVTIPAP 67

Query: 214 TPKSSSSVVCVTPFGPYAGGTELGMPGGVPPMLTSPSASADPKQVQPYTVHMXXXXXXXX 393
            P +++SV  V    P         P    P+ T P A A         V          
Sbjct: 68  APIAAASVAPVASVAPPVVAAPT--PPAASPVSTPPVAVAQIPVAVSAPVAPPVAATPTP 125

Query: 394 XXXXXMVTPVLQTPPAVTTQESGKKKRGMVTPVLQTPP 507
                +  PV+ TPP   +  +      +V+PV+ TPP
Sbjct: 126 VAPIPVAAPVIATPPVAASAPTPAAVTPVVSPVIATPP 163

>MSH5_MOUSE (Q9QUM7) MutS protein homolog 5|
          Length = 833

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
 Frame = -1

Query: 305 GGTPPG-----------IPSSVPPAYGPNGVTQTTEDELLGVKVCIPSGAGNMGVS 171
           G TPPG            PS  PP  GP G+ +  E+E   + +C+   +G +G++
Sbjct: 8   GRTPPGPGPRSGIPSASFPSPQPPMAGPGGIEEEDEEEPAEIHLCVLWSSGYLGIA 63

>NPRV_VIBPR (Q00971) Neutral protease precursor (EC 3.4.24.25) (Vibriolysin)|
           (Aeromonolysin)
          Length = 609

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 29/103 (28%), Positives = 40/103 (38%)
 Frame = +1

Query: 10  CGQV*TCRQRDKEIADISPYLRKISCQLTMAGNQQPASVVLDYAAVLDAKPLRTLTPMFP 189
           CG V         +AD+      +    +      P+  VL+       KPL  L+    
Sbjct: 473 CGVVKAASDMGYSVADVEDAFNTVGVNASCGATPPPSGDVLEIG-----KPLANLSGN-R 526

Query: 190 APLGMHTFTPKSSSSVVCVTPFGPYAGGTELGMPGGVPPMLTS 318
             +  +TFTP SSSSVV     G   G  +L +  G  P  TS
Sbjct: 527 NDMTYYTFTPSSSSSVVIKITGG--TGDADLYVKAGSKPTTTS 567

>GLI1_MOUSE (P47806) Zinc finger protein GLI1 (Glioma-associated oncogene|
           homolog)
          Length = 1111

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
 Frame = +1

Query: 148 LDAKPLRTLTPMFPAPLGMHTFTPKSSSSVV------CVTPFGPYAGGTELGMPG---GV 300
           L  K   +++P+  A L + T    S SS+V      C +P G Y G   +G      G 
Sbjct: 80  LTKKRALSISPLSDASLDLQTVIRTSPSSLVAFINSRCTSPGGSY-GHLSIGTMSPSLGF 138

Query: 301 PPMLTSPSASADPKQVQPYTVH 366
           PP ++    ++ P  VQP   H
Sbjct: 139 PPQMSHQKGTSPPYGVQPCVPH 160

>MURA_RALSO (Q8XV78) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC|
           2.5.1.7) (Enoylpyruvate transferase)
           (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT)
          Length = 421

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -1

Query: 332 AEADGDVNIGGTPPGIPSSVPPAYGPNGVTQTTEDELLGVKV 207
           A A GDV + G PPGI  +V       GVT T  D+ + V++
Sbjct: 247 AAAGGDVTLRGVPPGILDAVLDKLREAGVTLTMGDDWIRVQM 288

>EVE_DROME (P06602) Segmentation protein even-skipped|
          Length = 376

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = +1

Query: 133 DYAAVLDAKPLRTLTPMFPAPLGMHTFTPKSSSSVVCVTPFGPYAGGTELGMPGGVPPML 312
           D+A V D  P+    P  PAP  + T +P  +  ++  +   P +  +        PP  
Sbjct: 306 DHAKVFDRSPVAQSAPSVPAPAPLTTTSPLPAPGLLMPSAKRPASDMS--------PPPT 357

Query: 313 TSPSASADPKQVQPY 357
           T+  A   PK  +PY
Sbjct: 358 TTVIAEPKPKLFKPY 372

>MSL5_YEAST (Q12186) Branchpoint-bridging protein MSL5 (MUD synthesis lethal 5|
           protein)
          Length = 476

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 28/107 (26%), Positives = 36/107 (33%)
 Frame = +1

Query: 187 PAPLGMHTFTPKSSSSVVCVTPFGPYAGGTELGMPGGVPPMLTSPSASADPKQVQPYTVH 366
           P+P    +   + + +V    P G  +     G+PG  PP L SP  S  PK   P    
Sbjct: 375 PSPSPPASHISRQAQNVTPTPPPGLTSSSFSSGVPGIAPPPLQSPPESEQPKFSLPPPPG 434

Query: 367 MXXXXXXXXXXXXXMVTPVLQTPPAVTTQESGKKKRGMVTPVLQTPP 507
           M                P L  PP   +   G        P LQ PP
Sbjct: 435 MTTVQSSIA------PPPGLSGPPGF-SNNMGNDINKPTPPGLQGPP 474

>SUVH3_ARATH (Q9C5P4) Histone-lysine N-methyltransferase, H3 lysine-9 specific|
           SUVH3 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 3)
           (H3-K9-HMTase 3) (Suppressor of variegation 3-9 homolog
           protein 3) (Su(var)3-9 homolog protein 3) (Protein SET
           DOMAIN GR
          Length = 669

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = +1

Query: 133 DYAAVLDAKPLRTLTPMFPAP------LGMHTFTPKSSSSVVCVTPFG 258
           D + VLD KPLR+L P+FP        +G   F P SSS      PFG
Sbjct: 17  DKSIVLDIKPLRSLKPVFPNGNQGPPFVGCPPFGP-SSSEYSSFFPFG 63

>SALL3_HUMAN (Q9BXA9) Sal-like protein 3 (Zinc finger protein SALL3) (hSALL3)|
          Length = 1300

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -1

Query: 332 AEADGDVNIGGTPPGIPSSVPPAYGPNGVTQTTEDELLGVKVCI 201
           AE  GD      PP  P+   PAYG    T  T + LL  KV +
Sbjct: 136 AEPAGDTRAPRPPPAAPAPPTPAYGAPS-TNVTLEALLSTKVAV 178

>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 473

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +1

Query: 154 AKPLRTLTPMFPAPLGMHTFTPKSSSSVVCVTP--FGPYAGGTELGMPGGVPPMLTSPSA 327
           A P   + P  PAP G  T  P  +  +   T   FG  A    +G  GG PP    P+ 
Sbjct: 402 AMPPAPVPPGTPAPPGPATMMPDGTLGLTPPTTERFGQAATMEGIGAIGGTPPAFNRPAP 461

Query: 328 SAD 336
            A+
Sbjct: 462 GAE 464

>ECTC_STRAW (Q829L5) L-ectoine synthase (EC 4.2.1.-) (N-acetyldiaminobutyrate|
           dehydratase)
          Length = 134

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 17/39 (43%), Positives = 19/39 (48%)
 Frame = +1

Query: 205 HTFTPKSSSSVVCVTPFGPYAGGTELGMPGGVPPMLTSP 321
           HT  PK+    VCV  F P   G E     GV P+LT P
Sbjct: 95  HTMRPKTDFRCVCV--FNPPVTGREDHDENGVYPLLTEP 131

>HELZ_HUMAN (P42694) Probable helicase with zinc-finger domain (EC 3.6.1.-)|
          Length = 1942

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
 Frame = +1

Query: 112  QPASVVLDYAAVLDAKPLRTLTPMFPAPLGMHTFTPKSSSSVVCVTPF---------GPY 264
            Q   +V    +VL   P+R  TP  P PLG H    KS S V  + P            Y
Sbjct: 1142 QNDGIVQPNPSVLIGNPIRAYTP--PPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPAVY 1199

Query: 265  AGGTELGMPGGVP 303
             G   + +P  VP
Sbjct: 1200 GGNVVMSVPLPVP 1212

>MUCDL_RAT (Q9JIK1) Mucin and cadherin-like protein precursor|
           (Mu-protocadherin) (GP100)
          Length = 862

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 27/114 (23%), Positives = 37/114 (32%), Gaps = 9/114 (7%)
 Frame = +1

Query: 175 TPMFPAPLGMHTFTPKSSSSVVCVT---------PFGPYAGGTELGMPGGVPPMLTSPSA 327
           +P    P G  T TPK  +S   V          P  P    T+   PG   PM+ +P A
Sbjct: 534 SPQTATPGGDATQTPKPGTSQPMVPTPGASTSSQPATPSGSSTQTPKPGTSQPMVPTPGA 593

Query: 328 SADPKQVQPYTVHMXXXXXXXXXXXXXMVTPVLQTPPAVTTQESGKKKRGMVTP 489
           S   +   P                     P++ TP A T+ +         TP
Sbjct: 594 STSSQPATP-------SGSSTQTPRPGTSQPMVPTPGASTSSQPATPSGSTQTP 640

>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)|
          Length = 2442

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 36/149 (24%), Positives = 53/149 (35%), Gaps = 9/149 (6%)
 Frame = +1

Query: 88   QLTMAGNQQPASVVLDYAAVLDAKPLRTLTPMFPAP------LGMHTFTPKSSSSVVCVT 249
            Q+  A    P +++   A+ L   P+ T +P+ P P       GM +    +   +    
Sbjct: 823  QVPGAALPNPLNMLGPQASQLPCPPV-TQSPLHPTPPPASTAAGMPSLQHTTPPGMTPPQ 881

Query: 250  PFGPYAGGTELGMPGGVPPMLTSPSASADPKQVQPYTVHMXXXXXXXXXXXXXMVTPVLQ 429
            P  P    T +   G  P        SA   Q  P                   VTP  Q
Sbjct: 882  PAAPTQPSTPVSSSGQTPTPTPGSVPSATQTQSTP----------TVQAAAQAQVTPQPQ 931

Query: 430  T---PPAVTTQESGKKKRGMVTPVLQTPP 507
            T   PP+V T +S +++    TPV   PP
Sbjct: 932  TPVQPPSVATPQSSQQQ---PTPVHAQPP 957

>SEC16_SCHPO (O14029) Multidomain vesicle coat protein|
          Length = 1995

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +1

Query: 178  PMFPAPLGMHTFTPKSSSSVVCVTPFGPYAGGTEL-GMPGGVPPMLTSPSASADPKQVQP 354
            P  P P+ +    P S++    + P GP AG T + G PG   P+  +   +A P    P
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVPLTGKETAVPLSSMP 1941

>RM02_ARATH (P93311) Mitochondrial 60S ribosomal protein L2|
          Length = 349

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +1

Query: 154 AKPLRTLTPMFPAPLGMHTFT----PKSSSSVVCVTPFGPYAGGTELGMPGGVPPMLTSP 321
           A P + L P      G+ +F+          V C +P G  A    +G+P G+PP+ +S 
Sbjct: 90  APPRKILEPTTNTISGLFSFSFLPGKVDKRKVACFSP-GLMAAYVVVGLPTGMPPLSSSK 148

Query: 322 SASA 333
           SA A
Sbjct: 149 SAFA 152

>KIF1C_RAT (O35787) Kinesin-like protein KIF1C (Kinesin-like protein KIF1D)|
          Length = 1097

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 277 ELGMPGGVPPMLTSPSASADPKQVQPY 357
           E G PGGV P  +SP A A P    P+
Sbjct: 392 EEGSPGGVLPAASSPPAPASPSSPPPH 418

>MSH5_RAT (Q6MG62) MutS protein homolog 5|
          Length = 831

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = -1

Query: 302 GTPPGIPSSV-----PPAYGPNGVTQTTEDELLGVKVCIPSGAGNMGVS 171
           G  PG+PS+      P    P G+ +  E+E   + +C+   +G +G++
Sbjct: 13  GPGPGVPSASFSSPQPAMAAPGGIEEEDEEEPAEIHLCVLWSSGYLGIA 61


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,439,569
Number of Sequences: 219361
Number of extensions: 1909876
Number of successful extensions: 6146
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6134
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)