>HAM1_CLOTE (Q891I4) HAM1 protein homolog|
          Length = 201

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 13/37 (35%), Positives = 26/37 (70%)
 Frame = +3

Query: 357 KSVIAKISEKVTNLKELPVKVEEIKKQLTMMGNVIRQ 467
           K ++ +++ KV +LKE+ + VE  + +LT MGN +++
Sbjct: 18  KDILCELNLKVVSLKEVGINVEVEEDELTFMGNALKK 54

>NIFS_FRASE (Q9Z5X5) Cysteine desulfurase (EC 2.8.1.7) (Nitrogenase|
           metalloclusters biosynthesis protein nifS)
          Length = 419

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 25/73 (34%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
 Frame = +1

Query: 94  RPEDESVSQAGLVSSRQRCCLLDSTADLTRFALARAPVRLDHTGRSFGTYPAVLLYRPRS 273
           RP  E+   AG      RCC  D T      AL R PV  + TG       A  LY P+ 
Sbjct: 166 RPLVEAARSAG------RCCCADVTQ-----ALGRVPVEFERTGVDLAVSSAHKLYGPKG 214

Query: 274 VS---LQKIKWPR 303
           V      K  W R
Sbjct: 215 VGALIASKDAWSR 227

>NDUA5_HUMAN (Q16718) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit|
           5 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone
           oxidoreductase 13 kDa-B subunit) (Complex I-13Kd-B)
           (CI-13Kd-B) (Complex I subunit B13)
          Length = 115

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +3

Query: 270 IC*SPKDQMAEAVLIVVTKIGDILLEEATKSVIAKISEKVTNLKELPVKVEEIKKQL 440
           +C +P +++     I+ TKI D+L E    +   K +E++TN K   VK E   K+L
Sbjct: 15  VCNTPHERLR----ILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPDVKKL 67

>VTI13_ARATH (Q9LVP9) Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport|
           v-SNARE protein VTI13) (Vesicle soluble NSF attachment
           protein receptor 13)
          Length = 221

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 234 ERTTSVIKSDGSPRERKACEICSGVEKAAALTR 136
           ++ TS I  DG  +++   EI SGVE+A AL +
Sbjct: 21  KKCTSAIALDGEQKKQNLSEIKSGVEEAEALVK 53

>PGK_EUPCR (O02608) Phosphoglycerate kinase (EC 2.7.2.3)|
          Length = 418

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +3

Query: 321 TKIGDILLEEATKSVIAKISEKVTN---LKELPVKVEEIKKQLTMMGNV 458
           TK G+ILL E  +  + +  + V N   +K  P KVE  + QLT +G++
Sbjct: 111 TKDGNILLLENLRFYLEEEGKGVINGEKVKADPTKVESFRSQLTRLGDL 159

>RPOC_WEIHE (P96177) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit) (Fragment)
          Length = 1046

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = +3

Query: 312 IVVTKIGDILLEEATKSVIAKISEKVTNLKELPVKVEEIKKQLTMMGNVIRQ 467
           +++ ++ D+  +E+TKS +      VT+LKE P  +E+  KQ+  +    R+
Sbjct: 572 LLLDRMKDLGYDESTKSGLTVGVADVTDLKEKPEIIEDAHKQVATVTKQFRR 623

>CYOE_BUCAI (P57540) Protoheme IX farnesyltransferase (EC 2.5.1.-) (Heme O|
           synthase)
          Length = 285

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 455 IAHHGQLLLYFLNFYWQFLQISNLFRN 375
           ++++  LL   +NFYW FL  SN+ +N
Sbjct: 229 LSYNFLLLSSIVNFYWSFLSYSNIKKN 255

>ACDD2_METAC (Q8TJC2) Acetyl-CoA decarbonylase/synthase complex delta subunit 2|
           (ACDS complex delta subunit 2) (Corrinoid/iron-sulfur
           component small subunit 2)
          Length = 436

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 100 EDESVSQAGLVSSRQRCCLLDSTADLTRFALARAPVRLDH 219
           + E +++A  VS  +RC L  ++ +L   A+A A ++ DH
Sbjct: 239 DPEVLARAAEVSEGERCLLASASLNLDYAAIAEAALKYDH 278

>ACDD1_METAC (Q8TRZ8) Acetyl-CoA decarbonylase/synthase complex delta subunit 1|
           (ACDS complex delta subunit 1) (Corrinoid/iron-sulfur
           component small subunit 1)
          Length = 436

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 100 EDESVSQAGLVSSRQRCCLLDSTADLTRFALARAPVRLDH 219
           + E +++A  VS  +RC L  ++ +L   A+A A ++ DH
Sbjct: 239 DPEVLARAAEVSEGERCLLASASLNLDYAAIAEAALKYDH 278

>Y1053_METJA (Q58453) Hypothetical protein MJ1053|
          Length = 163

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
 Frame = +3

Query: 324 KIGDILLEEATKSVIAKIS----EKVTNLKELPVKVEEIKKQ 437
           K G++ +EE  K + A +     EK+T++K+L  ++E++KK+
Sbjct: 98  KRGELNIEEVEKFLEAVVRKEELEKITDIKKLEEEIEKLKKE 139


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,695,795
Number of Sequences: 219361
Number of extensions: 1066994
Number of successful extensions: 3228
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3226
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)