ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl01b05 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 127 bits (320), Expect = 1e-29 Identities = 62/125 (49%), Positives = 88/125 (70%), Gaps = 1/125 (0%) Frame = +3 Query: 117 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 293 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 294 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRNNLQHPNEYIRGVTLR 473 +R+VLP +DHTI+KLLL++ EI+ K GR+L EMIL+C R +LQHPNE+IRG TLR Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLR 122 Query: 474 FLCRL 488 FLC+L Sbjct: 123 FLCKL 127
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 127 bits (320), Expect = 1e-29 Identities = 62/125 (49%), Positives = 88/125 (70%), Gaps = 1/125 (0%) Frame = +3 Query: 117 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 293 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 294 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRNNLQHPNEYIRGVTLR 473 +R+VLP +DHTI+KLLL++ EI+ K GR+L EMIL+C R +LQHPNE+IRG TLR Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLR 122 Query: 474 FLCRL 488 FLC+L Sbjct: 123 FLCKL 127
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 127 bits (320), Expect = 1e-29 Identities = 62/125 (49%), Positives = 88/125 (70%), Gaps = 1/125 (0%) Frame = +3 Query: 117 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 293 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 294 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRNNLQHPNEYIRGVTLR 473 +R+VLP +DHTI+KLLL++ EI+ K GR+L EMIL+C R +LQHPNE+IRG TLR Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLR 122 Query: 474 FLCRL 488 FLC+L Sbjct: 123 FLCKL 127
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 127 bits (318), Expect = 2e-29 Identities = 58/120 (48%), Positives = 83/120 (69%) Frame = +3 Query: 129 PCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVL 308 PC +++ ++K DLE D K+E +KR + LLLNGE P L +T++R+VL Sbjct: 6 PCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVL 65 Query: 309 PSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRL 488 P ++HTI+KLLL++ EI+ K A G++L EMIL+C R +LQHPNE++RG TLRFLC+L Sbjct: 66 PVQNHTIKKLLLIFWEIVPKTSADGKLLQEMILVCDAYRKDLQHPNEFLRGSTLRFLCKL 125
>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 940 Score = 107 bits (266), Expect = 2e-23 Identities = 51/119 (42%), Positives = 77/119 (64%) Frame = +3 Query: 132 CTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLP 311 C LV D A + +K LE + K+ AMK + +++NG++LP++ + V+R+V+P Sbjct: 3 CWTLVQQDFLEAPSVDALKTSLESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVMP 62 Query: 312 SEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRL 488 S + ++KLL Y E+ K + G + EMIL C + RN+LQHPNE+IRG TLRFLC+L Sbjct: 63 SRNKELKKLLYYYWEVCPKYNNDGTMKQEMILACNSFRNDLQHPNEFIRGATLRFLCKL 121
>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 973 Score = 92.0 bits (227), Expect = 7e-19 Identities = 45/101 (44%), Positives = 70/101 (69%) Frame = +3 Query: 186 KADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIID 365 KA +GSD K++ MK ++ +L G +P L + ++R+V+PS++ ++KLL Y EI+ Sbjct: 30 KALEKGSD-EQKIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKKLLYFYWEIVP 88 Query: 366 KRDAAGRVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRL 488 K G++ EMIL+C ++++LQHPNEYIRG TLRFL +L Sbjct: 89 KLAEDGKLRHEMILVCNAIQHDLQHPNEYIRGNTLRFLTKL 129
>VATH_MANSE (Q9U5N0) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 475 Score = 32.3 bits (72), Expect = 0.70 Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 3/80 (3%) Frame = +3 Query: 258 NGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMIL---ICQNLRN 428 N + +F+ ++ ++ S+DHTIQ +L+L +I+ + + ++ E I Q N Sbjct: 76 NPDACADVFLNLLTHI--SKDHTIQYILVLIDDILSEDKSRVKIFRETKYSGNIWQPFLN 133 Query: 429 NLQHPNEYIRGVTLRFLCRL 488 L +E+++ +T R + +L Sbjct: 134 LLNRQDEFVQHMTARIIAKL 153
>MAM1_SCHPO (P78966) Mating factor M secretion protein mam1 (Multiple drug| resistance protein homolog) (P-glycoprotein) Length = 1336 Score = 31.2 bits (69), Expect = 1.6 Identities = 21/77 (27%), Positives = 40/77 (51%) Frame = +3 Query: 90 PARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGET 269 P +H +SG + P + FD S A + + L ++V+ +EA ++ ++ ++G Sbjct: 1082 PGNLH-KSGYLKFPLVGKIEFDGVSFAYPDSERNHLALNNVSLSIEAREKVAIVGISGSG 1140 Query: 270 LPTLFITVVRYVLPSED 320 TL + ++R PSED Sbjct: 1141 KSTL-VELLRKTYPSED 1156
>RSNL2_MOUSE (Q8CI96) Restin-like protein 2| Length = 704 Score = 29.6 bits (65), Expect = 4.5 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 5/83 (6%) Frame = +3 Query: 153 DKG---SAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 323 DKG + + + + LE +D AA + +K+ +LL+ LP T + VLP+ DH Sbjct: 218 DKGQIPAEVVPDPVDMPLEMADAAAIAKEIKQ---MLLDAVPLPC---TSAKAVLPNSDH 271 Query: 324 TIQKLLL--LYLEIIDKRDAAGR 386 T + +L L L++ D+ AG+ Sbjct: 272 TTSRAMLTSLGLKLGDRVVIAGQ 294
>DNAE2_SYMTH (Q67N73) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1085 Score = 29.6 bits (65), Expect = 4.5 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = -1 Query: 185 DLIRHGGGALVEVD*QRARLVHGAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 12 DL+R GGA+ + A ++ GA +H RRA V+ + A + ++ GAG+ G Sbjct: 868 DLVRRTGGAVPRGPLE-ALVLAGAFDRLHSNRRAALWQVAHLLEAERIRQERGAGQAG 924
>DAB1_MACFA (Q9BGX5) Disabled homolog 1| Length = 555 Score = 29.3 bits (64), Expect = 5.9 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 6/27 (22%) Frame = +1 Query: 7 HSPPLPAPRSRSTS------AADPTTD 69 +SPP PAPR S S A+DPTTD Sbjct: 480 NSPPTPAPRQSSPSKSSASHASDPTTD 506
>DAB1_HUMAN (O75553) Disabled homolog 1| Length = 555 Score = 29.3 bits (64), Expect = 5.9 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 6/27 (22%) Frame = +1 Query: 7 HSPPLPAPRSRSTS------AADPTTD 69 +SPP PAPR S S A+DPTTD Sbjct: 480 NSPPTPAPRQSSPSKSSASHASDPTTD 506
>AP4B1_MOUSE (Q9WV76) AP-4 complex subunit beta-1 (Adapter-related protein| complex 4 beta-1 subunit) (Beta subunit of AP-4) (AP-4 adapter complex beta subunit) Length = 739 Score = 28.9 bits (63), Expect = 7.7 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 5/115 (4%) Frame = +3 Query: 159 GSAAMANEIKADLEGSDVAAKV----EAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHT 326 GS + E+K L + A ++R + + G + +F+ +V+ + D Sbjct: 5 GSEDVVKELKKALCNPHIQADRLRYRNVIQRVIRHMTQGLDMSDVFMEMVK-ASATVDIV 63 Query: 327 IQKLLLLYLEIIDKRDAAGRVLPEMILICQN-LRNNLQHPNEYIRGVTLRFLCRL 488 +KL+ LY+ + P++ L+ N L + PN +RG+ LR +C L Sbjct: 64 QKKLVYLYM------GTYAPLKPDLALLAINTLCKDCSDPNPMVRGLALRSMCSL 112
>FREM2_MOUSE (Q6NVD0) FRAS1-related extracellular matrix protein 2 precursor| (ECM3 homolog) (NV domain-containing protein 1) Length = 3160 Score = 28.9 bits (63), Expect = 7.7 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +3 Query: 249 LLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILI 410 L L+ T L + + Y PSED ++L L LEI+D AA M+++ Sbjct: 371 LPLSSFTQRDLRLLKIAYQPPSEDSDQERLFELELEIVDPEGAASDPFAFMVVV 424
>GR43A_DROME (Q9V4K2) Putative gustatory receptor 43a| Length = 427 Score = 28.9 bits (63), Expect = 7.7 Identities = 20/63 (31%), Positives = 32/63 (50%) Frame = +3 Query: 225 EAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMI 404 E++ + V LL N + LFI V + H + L+LE++ KRD G + +M+ Sbjct: 279 ESLGKCVHLLSNSFGIAVLFILVSCLL-----HLVATAYFLFLELLSKRD-NGYLWVQML 332 Query: 405 LIC 413 IC Sbjct: 333 WIC 335 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.126 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,107,068 Number of Sequences: 219361 Number of extensions: 924468 Number of successful extensions: 3927 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3751 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3923 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
