Clone Name | bastl01b04 |
---|---|
Clone Library Name | barley_pub |
>LRP3_HUMAN (O75074) Low-density lipoprotein receptor-related protein 3| precursor (hLRp105) Length = 770 Score = 36.2 bits (82), Expect = 0.044 Identities = 20/46 (43%), Positives = 22/46 (47%) Frame = +3 Query: 93 GQISLVTTSVHRHLPLAPSSLAPRVGGAPCPPAPTSPRGETLAAAD 230 GQI L+T + L L P G AP PPAP G T AA D Sbjct: 620 GQIPLLTAARPSQTVLGDGFLQPAPGAAPDPPAPLMDTGSTRAAGD 665
>VASP_HUMAN (P50552) Vasodilator-stimulated phosphoprotein (VASP)| Length = 379 Score = 31.2 bits (69), Expect = 1.4 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 7/65 (10%) Frame = +3 Query: 36 GEPHPNRVPSWKGSGGLGAGQISLV-------TTSVHRHLPLAPSSLAPRVGGAPCPPAP 194 G P P +P+W G ++ + + R + A AP GG P PP P Sbjct: 116 GPPPPPALPTWSVPNGPSPEEVEQQKRQQPGPSEHIERRVSNAGGPPAPPAGGPPPPPGP 175 Query: 195 TSPRG 209 P G Sbjct: 176 PPPPG 180
>ADPGK_HUMAN (Q9BRR6) ADP-dependent glucokinase (EC 2.7.1.147) (ADPGK) (ADP-GK)| (RbBP-35) Length = 497 Score = 30.8 bits (68), Expect = 1.9 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 6/61 (9%) Frame = +3 Query: 66 WKGSGGLGAGQISLVTTSVHRHLPLAPSSLAPRV------GGAPCPPAPTSPRGETLAAA 227 W+GS AG ++L V P P S + G AP PP P SP G AA Sbjct: 4 WRGSAY--AGFLALAVGCVFLLEPELPGSALRSLWSSLCLGPAPAPPGPVSPEGRLAAAW 61 Query: 228 D 230 D Sbjct: 62 D 62
>PAK4_HUMAN (O96013) Serine/threonine-protein kinase PAK 4 (EC 2.7.11.1)| (p21-activated kinase 4) (PAK-4) Length = 591 Score = 30.8 bits (68), Expect = 1.9 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 16/80 (20%) Frame = +3 Query: 21 ARPSHGEPHPNRVPSWKGSGGLGAGQISLVTT---------------SVHRHLP-LAPSS 152 +R + GEPH + P+ +GGL Q S ++ H P LAP + Sbjct: 217 SRGAQGEPH-DVAPNGPSAGGLAIPQSSSSSSRPPTRARGAPSPGVLGPHASEPQLAPPA 275 Query: 153 LAPRVGGAPCPPAPTSPRGE 212 P P PP P SP+ E Sbjct: 276 CTPAAPAVPGPPGPRSPQRE 295
>SAM68_MOUSE (Q60749) KH domain-containing, RNA-binding, signal| transduction-associated protein 1 (p21 Ras GTPase-activating protein-associated p62) (GAP-associated tyrosine phosphoprotein p62) (Src-associated in mitosis 68 kDa protein) (Sam68) (p68) Length = 443 Score = 30.8 bits (68), Expect = 1.9 Identities = 24/66 (36%), Positives = 27/66 (40%) Frame = +3 Query: 3 HPAFALARPSHGEPHPNRVPSWKGSGGLGAGQISLVTTSVHRHLPLAPSSLAPRVGGAPC 182 HP+ L PS P P+R P G G G + S T P P A VG AP Sbjct: 27 HPSVRLT-PSRPSPLPHR-PRGGGGGPRGGARASPATQPPPLLPPSTPGPDATVVGSAPT 84 Query: 183 PPAPTS 200 P P S Sbjct: 85 PLLPPS 90
>TLX2_HUMAN (O43763) T-cell leukemia homeobox protein 2 (Homeobox protein| Hox-11L1) (Neural crest homeobox protein) Length = 284 Score = 30.4 bits (67), Expect = 2.4 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = +3 Query: 72 GSGGLGAGQISLVTTSVHRHLPLAPSSLAPRVGGAPCPPAPTSPRG 209 GS G+G G + + HR LP+ P + GGAP P P+ G Sbjct: 71 GSSGVGPGGV--IRVPAHRPLPVPPPA-----GGAPAVPGPSGLGG 109
>MYSA_DROME (P05661) Myosin heavy chain, muscle| Length = 1962 Score = 30.4 bits (67), Expect = 2.4 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 14/60 (23%) Frame = +2 Query: 305 AADNDLEEKLKDVGARL--------------QEAPPDSEGLLKLLDDVEKNLMNVEQSPA 442 A NDLE +L+D+ RL ++A + GL K ++D+E N+ EQ A Sbjct: 909 AQKNDLENQLRDIQERLTQEEDARNQLFQQKKKADQEISGLKKDIEDLELNVQKAEQDKA 968
>B3GA2_CANFA (Q5CAZ6) Galactosylgalactosylxylosylprotein| 3-beta-glucuronosyltransferase 2 (EC 2.4.1.135) (Beta-1,3-glucuronyltransferase 2) (Glucuronosyltransferase-S) (GlcAT-S) (UDP-glucuronosyltransferase-S) (GlcAT-D) Length = 329 Score = 30.4 bits (67), Expect = 2.4 Identities = 16/42 (38%), Positives = 16/42 (38%) Frame = -3 Query: 196 VGAGGHGAPPTRGARLEGARGRWRWTEVVTREICPAPNPPLP 71 VG GG PP RG G W P P PPLP Sbjct: 45 VGRGGARLPPRRGGPDSGPGRGWEKRNESRPHARPRPEPPLP 86
>FYB_HUMAN (O15117) FYN-binding protein (FYN-T-binding protein) (FYB-120/130)| (p120/p130) (SLP-76-associated phosphoprotein) (SLAP-130) Length = 783 Score = 30.0 bits (66), Expect = 3.2 Identities = 27/75 (36%), Positives = 31/75 (41%), Gaps = 9/75 (12%) Frame = +3 Query: 6 PAFALARPSHGEPHPNRVPS------WKGSGG--LGAGQISLVTTSVHRHLPLAPSSLAP 161 P F L P P PNR P+ K S G GQ S TTS+ P P+S P Sbjct: 349 PLFTLGPPP---PKPNRPPNVDLTKFHKTSSGNSTSKGQTSYSTTSLPPPPPSHPASQPP 405 Query: 162 RVGGAPC-PPAPTSP 203 P PP P+ P Sbjct: 406 LPASHPSQPPVPSLP 420
>TCOF_HUMAN (Q13428) Treacle protein (Treacher Collins syndrome protein)| Length = 1411 Score = 29.6 bits (65), Expect = 4.1 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +3 Query: 138 LAPSSLAPRVGGAPCPPAPTSP 203 LAP+ +PR G AP PP T P Sbjct: 823 LAPAKESPRKGAAPTPPGKTGP 844 Score = 28.5 bits (62), Expect = 9.2 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +3 Query: 141 APSSLAPRVGGAPCPPAPTSP 203 AP+ +PR G AP PP T P Sbjct: 299 APAKESPRKGAAPAPPGKTGP 319
>RPOA_PRRSR (Q9WJB2) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP Length = 3960 Score = 29.6 bits (65), Expect = 4.1 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +2 Query: 2 PPCLCPRKAEPRRAAPKSRPVVERERGVGS 91 PP + PRK +P ++ P+ +PV R VGS Sbjct: 816 PPKVQPRKTKPVKSLPERKPVPAPRRKVGS 845
>WASP_MOUSE (P70315) Wiskott-Aldrich syndrome protein homolog (WASp)| Length = 520 Score = 29.3 bits (64), Expect = 5.4 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 13/68 (19%) Frame = +3 Query: 39 EPHPNRVPSWKGSGGLGAG-------------QISLVTTSVHRHLPLAPSSLAPRVGGAP 179 EP P P +G GG G G + +V ++ R PL P + GGAP Sbjct: 313 EPLPPPPPPCRGGGGGGGGGGGGGGGGGGQPLRPPVVGSNKGRSGPLPPVPM----GGAP 368 Query: 180 CPPAPTSP 203 PP P P Sbjct: 369 PPPTPRGP 376
>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)| Length = 2442 Score = 29.3 bits (64), Expect = 5.4 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%) Frame = +3 Query: 51 NRVPSWKGSGGLGAGQISLVTTSVHRHLPLAP-----SSLAPRVGGAPCPPAPTSP 203 N+ PS G+ +G GQ T +P A + L P+ PCPP SP Sbjct: 797 NQFPSSSGAMSVGMGQPPAQTGVSQGQVPGAALPNPLNMLGPQASQLPCPPVTQSP 852
>HXD8_MOUSE (P23463) Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4)| Length = 289 Score = 29.3 bits (64), Expect = 5.4 Identities = 21/64 (32%), Positives = 23/64 (35%) Frame = +3 Query: 12 FALARPSHGEPHPNRVPSWKGSGGLGAGQISLVTTSVHRHLPLAPSSLAPRVGGAPCPPA 191 F A P H PHP+ P G GG G GQ + S AP PP Sbjct: 63 FPHAHP-HPHPHPSPPPGCGGGGGPGPGQ---------DYFHAGAGSPTAAYQAAPPPPH 112 Query: 192 PTSP 203 P P Sbjct: 113 PPPP 116
>RXRB_CANFA (Q5TJF7) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)| Length = 533 Score = 29.3 bits (64), Expect = 5.4 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = +3 Query: 132 LPLAPSSLAPRVGGAPCPPAPTSP 203 LPL PSS AP +GG+ PP P P Sbjct: 103 LPLPPSS-APTLGGSGAPPPPPMP 125
>YBOX2_MOUSE (Q9Z2C8) Y-box-binding protein 2 (Germ cell-specific Y-box-binding| protein) (FRGY2 homolog) Length = 360 Score = 28.9 bits (63), Expect = 7.1 Identities = 18/58 (31%), Positives = 22/58 (37%) Frame = +3 Query: 48 PNRVPSWKGSGGLGAGQISLVTTSVHRHLPLAPSSLAPRVGGAPCPPAPTSPRGETLA 221 P + G GG GA T +H P P + A G P PPA + LA Sbjct: 37 PQKAGGGAGGGG-GAASGPAAGTPLHAPGPRTPGNQATAASGTPAPPARSQADKPVLA 93
>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)| Length = 706 Score = 28.9 bits (63), Expect = 7.1 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Frame = +3 Query: 27 PSHGEPHPNRVPSWKGSGGLGAGQISLVTTSVHRH-LPLAPSSLAPRVGGAPCPPAPTSP 203 P G P P R+PS + A Q + VT R P+A AP P P+P Sbjct: 498 PPAGSPLPQRLPSPTAAPQQSASQATPVTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQ 557 Query: 204 RG 209 G Sbjct: 558 AG 559
>PIN3A_ORYSA (Q5VP70) Probable auxin efflux carrier component 3a (OsPIN3a)| Length = 618 Score = 28.9 bits (63), Expect = 7.1 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 165 VGGAPCPPAPTSPRGETLAAADL 233 VGG P PP P + RG + A++L Sbjct: 257 VGGGPPPPTPAAVRGSSFGASEL 279
>C1QB_RAT (P31721) Complement C1q subcomponent subunit B precursor| Length = 253 Score = 28.9 bits (63), Expect = 7.1 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Frame = +3 Query: 30 SHGEPHPNRVPSWKGSGGLGAGQISLVTTSVHRHLPLAPSSLAPR--VG--GAPCPPAPT 197 S G+P + KG GL AG + +P P + P+ VG GAP PP P Sbjct: 47 SDGKPGTPGIKGEKGLPGL-AGDHGELGEKGDAGIPGIPGKVGPKGPVGPKGAPGPPGPR 105 Query: 198 SPRG 209 P+G Sbjct: 106 GPKG 109
>ANC1_CAEEL (Q9N4M4) Nuclear anchorage protein 1 (Anchorage 1 protein) (Nesprin| homolog) Length = 8545 Score = 28.9 bits (63), Expect = 7.1 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Frame = +2 Query: 299 EAAADNDLEEKLKDVGARLQEAPPDSEGLL----KLLDDVEKNLMNVE 430 +AAA N++ KL+ V +LQ P + L +LL+DVE N+E Sbjct: 7926 KAAAVNEIAPKLQLVSQQLQSVPQEVPASLDEQKQLLEDVENQKHNLE 7973 Score = 28.9 bits (63), Expect = 7.1 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Frame = +2 Query: 299 EAAADNDLEEKLKDVGARLQEAPPDSEGLL----KLLDDVEKNLMNVE 430 +AAA N++ KL+ V +LQ P + L +LL+DVE N+E Sbjct: 7023 KAAAVNEIAPKLQLVSQQLQSVPQEVPASLDEQKQLLEDVENQKHNLE 7070 Score = 28.9 bits (63), Expect = 7.1 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Frame = +2 Query: 299 EAAADNDLEEKLKDVGARLQEAPPDSEGLL----KLLDDVEKNLMNVE 430 +AAA N++ KL+ V +LQ P + L +LL+DVE N+E Sbjct: 6120 KAAAVNEIAPKLQLVSQQLQSVPQEVPASLDEQKQLLEDVENQKHNLE 6167 Score = 28.9 bits (63), Expect = 7.1 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Frame = +2 Query: 299 EAAADNDLEEKLKDVGARLQEAPPDSEGLL----KLLDDVEKNLMNVE 430 +AAA N++ KL+ V +LQ P + L +LL+DVE N+E Sbjct: 5217 KAAAVNEIAPKLQLVSQQLQSVPQEVPASLDEQKQLLEDVENQKHNLE 5264 Score = 28.9 bits (63), Expect = 7.1 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Frame = +2 Query: 299 EAAADNDLEEKLKDVGARLQEAPPDSEGLL----KLLDDVEKNLMNVE 430 +AAA N++ KL+ V +LQ P + L +LL+DVE N+E Sbjct: 4263 KAAAVNEIAPKLQLVSQQLQSVPQEVPASLDEQKQLLEDVENQKHNLE 4310 Score = 28.9 bits (63), Expect = 7.1 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Frame = +2 Query: 299 EAAADNDLEEKLKDVGARLQEAPPDSEGLL----KLLDDVEKNLMNVE 430 +AAA N++ KL+ V +LQ P + L +LL+DVE N+E Sbjct: 3360 KAAAVNEIAPKLQLVSQQLQSVPQEVPASLDEQKQLLEDVENQKHNLE 3407
>VSX1_BOVIN (Q9GMA3) Visual system homeobox 1 (Transcription factor VSX1)| (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX) Length = 365 Score = 28.9 bits (63), Expect = 7.1 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +3 Query: 135 PLAPSSLAPRVGGAPCPPAPTSPRGETLAAAD 230 P P LAPR G P P A R E+++ +D Sbjct: 111 PEGPEPLAPRFPGRPPPSAARQKRSESVSTSD 142
>CO4A1_HUMAN (P02462) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 28.9 bits (63), Expect = 7.1 Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 13/72 (18%) Frame = +3 Query: 36 GEPHPNRVPSWKGSGGLGAGQISLVTTSVHRHLPLAPSSLAPR--------VG-----GA 176 G P P +P KG G G + + R P P + P VG G Sbjct: 145 GNPGPPGLPGMKGDPGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVGPPGFTGP 204 Query: 177 PCPPAPTSPRGE 212 P PP P P GE Sbjct: 205 PGPPGPPGPPGE 216
>GLIS1_HUMAN (Q8NBF1) Zinc finger protein GLIS1 (GLI-similar 1)| Length = 620 Score = 28.5 bits (62), Expect = 9.2 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Frame = +3 Query: 3 HPAFALARPSHGEPHPNRVPSWKGS-GGLGAGQISLVTTSVHR--HLPLAPSSLAPRVGG 173 HP A H H + +P + + GLG G +S + + + PL PSS + GG Sbjct: 429 HPLDATTSSHH---HLSPLPMAESTRDGLGPGLLSPIVSPLKGLGPPPLPPSSQSHSPGG 485 Query: 174 APCPPAPTSP 203 P P P+ P Sbjct: 486 QPFPTLPSKP 495
>WASF2_MOUSE (Q8BH43) Wiskott-Aldrich syndrome protein family member 2| (WASP-family protein member 2) (WAVE-2 protein) Length = 497 Score = 28.5 bits (62), Expect = 9.2 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 135 PLAPSSLAPRVGGAPCPPAPTSPRG 209 P+ P L+ GGAP PP P P G Sbjct: 374 PMPPPPLSQPSGGAPPPPPPPPPPG 398
>MYBPH_MOUSE (P70402) Myosin-binding protein H (MyBP-H) (H-protein)| Length = 483 Score = 28.5 bits (62), Expect = 9.2 Identities = 16/70 (22%), Positives = 28/70 (40%) Frame = +3 Query: 15 ALARPSHGEPHPNRVPSWKGSGGLGAGQISLVTTSVHRHLPLAPSSLAPRVGGAPCPPAP 194 +++ P P P +VP+ + SG + A + + + P A AP P P Sbjct: 10 SVSTPEETAPEPAKVPTTEPSGEVAASESTGQEQAPEPQKPQAQDPAAPAASAMPAATKP 69 Query: 195 TSPRGETLAA 224 P + +A Sbjct: 70 EPPSEDVPSA 79
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 28.5 bits (62), Expect = 9.2 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 11/85 (12%) Frame = +3 Query: 6 PAFALAR---PSHGEPHPNRVPSWKGSGGLGAGQISLVTTSVHRHLPLAPSS-------- 152 P F +A P+ G + + + K SG G + L V R P + ++ Sbjct: 2268 PRFPIASSVPPAEGPVYLGKPAATKASGAGGPPRPEL-PAGVAREEPFSTTAPAVIKEAP 2326 Query: 153 LAPRVGGAPCPPAPTSPRGETLAAA 227 +AP G AP PP P GE A + Sbjct: 2327 VAPAPGPAPAPPPGQKPAGEAAAGS 2351
>PAK4_MOUSE (Q8BTW9) Serine/threonine-protein kinase PAK 4 (EC 2.7.11.1)| (p21-activated kinase 4) (PAK-4) Length = 593 Score = 28.5 bits (62), Expect = 9.2 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 18/81 (22%) Frame = +3 Query: 24 RPSHGEPHPNRVPSWKGSGGLGAGQISLVT------------------TSVHRHLPLAPS 149 R + GEPH P+ + GL A Q S + S + P A + Sbjct: 218 RGAQGEPH-TMAPNGPSATGLAAPQSSSSSRPPTRARGAPSPGVLGPHASEPQLAPPARA 276 Query: 150 SLAPRVGGAPCPPAPTSPRGE 212 AP V AP PP P SP+ E Sbjct: 277 LAAPAVPPAPGPPGPRSPQRE 297
>NKX24_HUMAN (Q9H2Z4) Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4)| (Homeobox protein NK-2 homolog D) Length = 353 Score = 28.5 bits (62), Expect = 9.2 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 Query: 83 PPAPFPRRDAIWVRLSVARPCEG 15 PP P PRR A+ V + +PC+G Sbjct: 267 PPPPSPRRAAVPVLVKDGKPCQG 289
>CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor| Length = 689 Score = 28.5 bits (62), Expect = 9.2 Identities = 19/59 (32%), Positives = 20/59 (33%) Frame = +3 Query: 36 GEPHPNRVPSWKGSGGLGAGQISLVTTSVHRHLPLAPSSLAPRVGGAPCPPAPTSPRGE 212 GEP P +P KG GL P P P G P PP P GE Sbjct: 90 GEPGPMGIPGVKGQPGL----------------PGPPGLPGPGFAGPPGPPGPVGLPGE 132
>SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein| Length = 977 Score = 28.5 bits (62), Expect = 9.2 Identities = 24/74 (32%), Positives = 31/74 (41%) Frame = +3 Query: 6 PAFALARPSHGEPHPNRVPSWKGSGGLGAGQISLVTTSVHRHLPLAPSSLAPRVGGAPCP 185 P+F PSH + PS S G VT + ++P + P GGAP P Sbjct: 519 PSFTSGVPSHAPVSGS--PSTPRSSGP-------VTATSSLYIPAPSRPVTP--GGAPEP 567 Query: 186 PAPTSPRGETLAAA 227 PAP S T A+ Sbjct: 568 PAPPSAAAMTSTAS 581
>VASP_MOUSE (P70460) Vasodilator-stimulated phosphoprotein (VASP)| Length = 374 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 3/61 (4%) Frame = +3 Query: 36 GEPHPNRVPSWKGSGGLGAGQISLVTTS---VHRHLPLAPSSLAPRVGGAPCPPAPTSPR 206 G P P+W G ++ + R + A AP GG P PP P P Sbjct: 116 GPPPAPAPPAWSAQNGPSPEELEQQKRQPEHMERRVSNAGGPPAPPAGGPPPPPGPPPPP 175 Query: 207 G 209 G Sbjct: 176 G 176
>RUSC2_HUMAN (Q8N2Y8) RUN and SH3 domain-containing protein 2| Length = 1516 Score = 28.5 bits (62), Expect = 9.2 Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 3/56 (5%) Frame = -3 Query: 193 GAGGHG---APPTRGARLEGARGRWRWTEVVTREICPAPNPPLPFHDGTRFGCGSP 35 GAGG G APP R +EGA E CPA L G F GSP Sbjct: 1305 GAGGGGPPQAPPPREGVVEGA------------EACPASEEALGRERGWPFWMGSP 1348
>CUC2C_HAECO (P16252) Cuticle collagen 2C (Fragment)| Length = 210 Score = 28.5 bits (62), Expect = 9.2 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 2/60 (3%) Frame = +3 Query: 36 GEPHPNRVPSWKGSGGL--GAGQISLVTTSVHRHLPLAPSSLAPRVGGAPCPPAPTSPRG 209 G P P P G G AGQ P A + P V G P PP PT P G Sbjct: 92 GPPGPKGPPGPPGKAGAPGAAGQ------------PGANAPSEPLVPGPPGPPGPTGPEG 139 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,201,715 Number of Sequences: 219361 Number of extensions: 929362 Number of successful extensions: 5823 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 4981 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5788 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)