Clone Name | bastl01b03 |
---|---|
Clone Library Name | barley_pub |
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 177 bits (449), Expect = 1e-44 Identities = 86/108 (79%), Positives = 94/108 (87%) Frame = +2 Query: 131 MLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHEILGKDDGVSF 310 M + G DRLTG+NKEAWKEG+IRGTAVLVK DVL LGDFHASLLDGVH ILG +GV+F Sbjct: 1 MQVQGFFDRLTGRNKEAWKEGRIRGTAVLVKKDVLGLGDFHASLLDGVHNILGHKEGVAF 60 Query: 311 RLVSATAPDPQNGSRGKVGKPAHLEEMVVTMKSTAAXESVFKVTFEWD 454 RLVSATA DP NG RGK+GKPAHLEE+VVTMKSTAA ESVF+V FEWD Sbjct: 61 RLVSATARDPSNGGRGKLGKPAHLEELVVTMKSTAAGESVFRVAFEWD 108
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 104 bits (259), Expect = 1e-22 Identities = 54/108 (50%), Positives = 75/108 (69%) Frame = +2 Query: 131 MLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHEILGKDDGVSF 310 MLL GL+D LTG NK A +++GT VL++ +VLDL DF A+++DG+ E LGK GV+ Sbjct: 1 MLLGGLIDTLTGANKSA----RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGK--GVTC 54 Query: 311 RLVSATAPDPQNGSRGKVGKPAHLEEMVVTMKSTAAXESVFKVTFEWD 454 +L+S+TA D NG RGKVG A LE+ V ++ S ES F +TF+W+ Sbjct: 55 QLISSTAVDQDNGGRGKVGAEAELEQWVTSLPSLTTGESKFGLTFDWE 102
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 97.8 bits (242), Expect = 1e-20 Identities = 51/103 (49%), Positives = 70/103 (67%) Frame = +2 Query: 146 LVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHEILGKDDGVSFRLVSA 325 L D LTG E + K++GT VL+K +VLD DF+AS LD +HE LG ++ RLVS+ Sbjct: 5 LRDLLTGGGNETTTK-KVKGTVVLMKKNVLDFNDFNASFLDRLHEFLGNK--ITLRLVSS 61 Query: 326 TAPDPQNGSRGKVGKPAHLEEMVVTMKSTAAXESVFKVTFEWD 454 D +NGS+GK+GK AHLE+ + T+ S A ES FKVTF+++ Sbjct: 62 DVTDSENGSKGKLGKAAHLEDWITTITSLTAGESAFKVTFDYE 104
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 96.7 bits (239), Expect = 3e-20 Identities = 50/108 (46%), Positives = 77/108 (71%), Gaps = 1/108 (0%) Frame = +2 Query: 134 LLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHEILGKDDGVSFR 313 +L G++D +TG +K++ +++GT VL++ +VLDL DF A+++DG+ E LGK GV+ + Sbjct: 1 MLGGIIDTITGSSKQS----RLKGTVVLMRKNVLDLNDFGATVIDGLGEFLGK--GVTCQ 54 Query: 314 LVSATAPDPQNGSRGKVGKPAHLEE-MVVTMKSTAAXESVFKVTFEWD 454 L+S+TA DP NG+RGKVG A LE+ + ++ S ES F VTF+WD Sbjct: 55 LISSTAVDPNNGNRGKVGAEASLEQWLTSSLPSLTTGESRFGVTFDWD 102
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 88.6 bits (218), Expect = 7e-18 Identities = 44/107 (41%), Positives = 71/107 (66%) Frame = +2 Query: 134 LLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHEILGKDDGVSFR 313 +L G++ LTG K +++G+ VL++ + LD+ DF A+++DG+ E LG+ GV+ + Sbjct: 1 MLGGIIGGLTGN-----KNARLKGSLVLMRKNALDINDFGATVIDGISEFLGR--GVTCQ 53 Query: 314 LVSATAPDPQNGSRGKVGKPAHLEEMVVTMKSTAAXESVFKVTFEWD 454 LVS++ DP NG+RG+VG A LE+ + ++ S ES F VTFEW+ Sbjct: 54 LVSSSLVDPNNGNRGRVGTEASLEQWLTSLPSLTTGESKFGVTFEWE 100
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 82.0 bits (201), Expect = 6e-16 Identities = 48/107 (44%), Positives = 64/107 (59%) Frame = +2 Query: 134 LLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHEILGKDDGVSFR 313 +L GL D+LTGKN KI+G AVL+ +LD DF ASLLD VHE+ G + ++ + Sbjct: 1 MLGGLKDKLTGKNGN-----KIKGLAVLMSRKLLDPRDFTASLLDNVHEVFG--NSITCQ 53 Query: 314 LVSATAPDPQNGSRGKVGKPAHLEEMVVTMKSTAAXESVFKVTFEWD 454 LVSAT D N RG VG A+LE+ + + S + ES V F W+ Sbjct: 54 LVSATVADQNNEGRGIVGSEANLEQGLTDLPSVSQGESKLTVRFNWE 100
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 78.2 bits (191), Expect = 9e-15 Identities = 43/107 (40%), Positives = 65/107 (60%) Frame = +2 Query: 134 LLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHEILGKDDGVSFR 313 +L LV L G + ++ K++GT V++K + LD D SL D + E LG+ VSF+ Sbjct: 1 MLGQLVGGLIGGHHDS---KKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQK--VSFQ 55 Query: 314 LVSATAPDPQNGSRGKVGKPAHLEEMVVTMKSTAAXESVFKVTFEWD 454 L+S+ DP NG +GK PA+LE ++T+ AA E+ F VTF+W+ Sbjct: 56 LISSVQSDPANGLQGKHSNPAYLENFLLTLTPLAAGETAFGVTFDWN 102
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 71.6 bits (174), Expect = 9e-13 Identities = 40/108 (37%), Positives = 64/108 (59%) Frame = +2 Query: 131 MLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHEILGKDDGVSF 310 M L G+VD + GK+ K++G +L+K +VLD + AS++DG+ ++LG+ VS Sbjct: 1 MSLGGIVDAILGKDDRP----KVKGRVILMKKNVLDFINIGASVVDGISDLLGQK--VSI 54 Query: 311 RLVSATAPDPQNGSRGKVGKPAHLEEMVVTMKSTAAXESVFKVTFEWD 454 +L+S + +G GK+ PA+LE + + A ES F VTF+WD Sbjct: 55 QLISGSVN--YDGLEGKLSNPAYLESWLTDITPITAGESTFSVTFDWD 100
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 70.1 bits (170), Expect = 3e-12 Identities = 36/88 (40%), Positives = 55/88 (62%), Gaps = 1/88 (1%) Frame = +2 Query: 194 KIRGTAVLVKSDVLDLGDFHASLLDGVHEILGKDDGVSFRLVSATAPDPQNGSRGKVGKP 373 K++GT V++ +VLD D SL + ++LG+ VSF+L+S+ DP NG +GK P Sbjct: 18 KVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQK--VSFQLISSVQGDPTNGLQGKHSNP 75 Query: 374 AHLEEMVVTMKS-TAAXESVFKVTFEWD 454 A+LE + T+ TA E+ F VTF+W+ Sbjct: 76 AYLENSLFTLTPLTAGSETAFGVTFDWN 103
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 60.8 bits (146), Expect = 2e-09 Identities = 43/108 (39%), Positives = 58/108 (53%), Gaps = 18/108 (16%) Frame = +2 Query: 185 KEGKIRGTAVLVKSDVLDL--------GDFHA----------SLLDGVHEILGKDDGVSF 310 K KIRGT VL++ +VLD G+ H S LDG+ LG+ VS Sbjct: 11 KGHKIRGTVVLMRKNVLDFNTIVSIGGGNVHGVIDSGINIIGSTLDGLTAFLGRS--VSL 68 Query: 311 RLVSATAPDPQNGSRGKVGKPAHLEEMVVTMKSTAAXESVFKVTFEWD 454 +L+SAT D NG +GKVGK LE ++ ++ + A ES F + FEWD Sbjct: 69 QLISATKSDA-NG-KGKVGKDTFLEGVLASLPTLGAGESAFNIHFEWD 114
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 60.5 bits (145), Expect = 2e-09 Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 13/100 (13%) Frame = +2 Query: 194 KIRGTAVLVKSDVLDLG-------------DFHASLLDGVHEILGKDDGVSFRLVSATAP 334 KI+GT VL++ +VLD+ D S +D + LG+ VS +L+SAT P Sbjct: 14 KIKGTVVLMRKNVLDINSLTTVGGVIGQGFDILGSTVDNLTAFLGRS--VSLQLISATKP 71 Query: 335 DPQNGSRGKVGKPAHLEEMVVTMKSTAAXESVFKVTFEWD 454 D +GK+GK LE ++ ++ + A +S FK+ FEWD Sbjct: 72 DATG--KGKLGKATFLEGIISSLPTLGAGQSAFKIHFEWD 109
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 56.6 bits (135), Expect = 3e-08 Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 13/100 (13%) Frame = +2 Query: 194 KIRGTAVLVKSDVLDLG-------------DFHASLLDGVHEILGKDDGVSFRLVSATAP 334 KI+GT VL++ +VL + D S LD + LG+ VS +L+SAT Sbjct: 11 KIKGTVVLMRKNVLHVNSVTSVGGIIGQGLDLVGSTLDTLTAFLGRP--VSLQLISATKA 68 Query: 335 DPQNGSRGKVGKPAHLEEMVVTMKSTAAXESVFKVTFEWD 454 D NG +GK+GK LE ++ ++ + A +S FK+ FEWD Sbjct: 69 DA-NG-KGKLGKATFLEGIITSLPTLGAGQSAFKINFEWD 106
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 55.8 bits (133), Expect = 5e-08 Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 18/105 (17%) Frame = +2 Query: 194 KIRGTAVLVKSDVLDLGDFH------------------ASLLDGVHEILGKDDGVSFRLV 319 KI+GT VL++ +VLD S LD + LG+ V+ +L+ Sbjct: 18 KIKGTVVLMRKNVLDFNSVADLTKGNVGGLIGTGLNVVGSTLDNLTAFLGRS--VALQLI 75 Query: 320 SATAPDPQNGSRGKVGKPAHLEEMVVTMKSTAAXESVFKVTFEWD 454 SAT P NG +GKVGK LE ++V++ + A ES F + FEWD Sbjct: 76 SATKP-LANG-KGKVGKDTFLEGIIVSLPTLGAGESAFNIQFEWD 118
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 55.1 bits (131), Expect = 8e-08 Identities = 33/87 (37%), Positives = 50/87 (57%) Frame = +2 Query: 194 KIRGTAVLVKSDVLDLGDFHASLLDGVHEILGKDDGVSFRLVSATAPDPQNGSRGKVGKP 373 KI+GT VL+ + L++ S +D ++ LG+ VS +L+SAT D +GKVGK Sbjct: 7 KIKGTVVLMPKNELEVNP-DGSAVDNLNAFLGRS--VSLQLISATKADAHG--KGKVGKD 61 Query: 374 AHLEEMVVTMKSTAAXESVFKVTFEWD 454 LE + ++ + A ES F + FEWD Sbjct: 62 TFLEGINTSLPTLGAGESAFNIHFEWD 88
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 50.8 bits (120), Expect = 2e-06 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 20/107 (18%) Frame = +2 Query: 194 KIRGTAVLVKSDVLDL--------------------GDFHASLLDGVHEILGKDDGVSFR 313 K++GT +L++ +VLD+ G S++D LG+ V R Sbjct: 11 KLKGTVILMQKNVLDINALTAAQSPSGIIGGAFGVVGSIAGSIIDTATAFLGRS--VRLR 68 Query: 314 LVSATAPDPQNGSRGKVGKPAHLEEMVVTMKSTAAXESVFKVTFEWD 454 L+SAT D +GKV K A LE ++ ++ + +S F V FEWD Sbjct: 69 LISATVADASG--KGKVSKEAFLEGLLTSIPTLGDKQSAFSVHFEWD 113
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 48.9 bits (115), Expect = 6e-06 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 22/112 (19%) Frame = +2 Query: 185 KEGKIRGTAVLVKSDVLDLGDFHA------------------SLLDGVHE----ILGKDD 298 K KI+GT VL+ +VLD + SL+ GV + LG++ Sbjct: 7 KGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRN- 65 Query: 299 GVSFRLVSATAPDPQNGSRGKVGKPAHLEEMVVTMKSTAAXESVFKVTFEWD 454 +S +L+SAT D GKVGK +LE+ + T+ + A + F + FEWD Sbjct: 66 -ISMQLISATQTD--GSGNGKVGKEVYLEKHLPTLPTLGARQDAFSIFFEWD 114
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 46.6 bits (109), Expect = 3e-05 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 13/103 (12%) Frame = +2 Query: 185 KEGKIRGTAVLVKSDVLDLGD-------------FHASLLDGVHEILGKDDGVSFRLVSA 325 K KI+GT V+++ +VLD+ F S +D + K +S +L+SA Sbjct: 7 KGQKIKGTMVVMQKNVLDINSITSVGGIVDQGLGFIGSAVDALTFAATK---ISIQLISA 63 Query: 326 TAPDPQNGSRGKVGKPAHLEEMVVTMKSTAAXESVFKVTFEWD 454 T D G +GK+GK +L +T+ + A E + V FEWD Sbjct: 64 TKAD---GGKGKIGKSTNLRGK-ITLPTLGAGEQAYDVNFEWD 102
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 43.5 bits (101), Expect = 3e-04 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 22/109 (20%) Frame = +2 Query: 194 KIRGTAVLVKSDVLDLGDFHAS----------------------LLDGVHEILGKDDGVS 307 KI+GT VL+ +V D +F ++ ++DG I ++ ++ Sbjct: 10 KIKGTVVLMTKNVFDFNEFVSTTRGGIVGAAGGLFGAATDIVGGIVDGATAIFSRN--IA 67 Query: 308 FRLVSATAPDPQNGSRGKVGKPAHLEEMVVTMKSTAAXESVFKVTFEWD 454 +L+SAT D GKVGK LE+ + ++ + + F V FEWD Sbjct: 68 IQLISATKTDGLGN--GKVGKQTFLEKHLPSLPNLGDRQDAFNVYFEWD 114
>AT132_MOUSE (Q9CTG6) Probable cation-transporting ATPase 13A2 (EC 3.6.3.-)| Length = 1169 Score = 31.2 bits (69), Expect = 1.3 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 8/54 (14%) Frame = -1 Query: 417 AAVDFIVTTISS-----RCAGFPTLPRLPFCG---SGAVALTRRKETPSSLPRI 280 AA++F+ T S+ + G+PT+P FC SG+ RK P LP++ Sbjct: 780 AALEFLPTESSAVMNGAKATGYPTVPEPQFCHLALSGSTFAVLRKHFPKLLPKV 833
>ZN205_HUMAN (O95201) Zinc finger protein 205 (Zinc finger protein 210)| Length = 504 Score = 30.4 bits (67), Expect = 2.2 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Frame = +2 Query: 11 HHCPPCAKCISKGTG--TH-RLCSSCSALPCLRCRTREQRRGEMLLH 142 H CP CAKC ++ + TH R + PC C +R ++ H Sbjct: 370 HKCPICAKCFTQSSALVTHQRTHTGVKPYPCPECGKCFSQRSNLIAH 416
>ZN449_HUMAN (Q6P9G9) Zinc finger protein 449 (Zinc finger and SCAN| domain-containing protein 19) Length = 518 Score = 30.0 bits (66), Expect = 2.9 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%) Frame = +2 Query: 11 HHCPPCAKCI---SKGTGTHRLCSSCSALPCLRCRTREQRRGEMLLH 142 H CP C KC S+ TG R+ S C C R R ++ H Sbjct: 323 HRCPQCGKCFARKSQLTGHQRIHSGEEPHKCPECGKRFLRSSDLYRH 369
>ZFP13_MOUSE (P10754) Zinc finger protein 13 (Zfp-13) (Krox-8 protein)| Length = 512 Score = 29.3 bits (64), Expect = 4.9 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Frame = +2 Query: 11 HHCPPCAKCISKGTG--TH-RLCSSCSALPCLRCRTREQRRGEMLLH 142 H CP C+KC ++ + TH R + PC C +R ++ H Sbjct: 378 HKCPICSKCFTQSSALVTHQRTHTGVKPYPCPECGKCFSQRSNLIAH 424
>TRUA_GEOKA (Q5L3Q7) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 258 Score = 28.9 bits (63), Expect = 6.4 Identities = 31/113 (27%), Positives = 41/113 (36%), Gaps = 2/113 (1%) Frame = +2 Query: 2 PYHHHCPPCAKCISKGTGTHRLCSSCSALPCLRCRTREQRRGEMLLHG--LVDRLTGKNK 175 PY H + + GTH S CSA + R R R E+ G L R G Sbjct: 134 PYSLHISAMNEALRLLHGTHDFTSFCSAKTSIEDRVRTMYRAEVKADGPMLEFRFVG--- 190 Query: 176 EAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHEILGKDDGVSFRLVSATAP 334 G + ++ VL++G S D + KD RL TAP Sbjct: 191 ----SGFLYNMVRIIVGTVLEIGQGKRSPADISTLLAAKDR----RLAGPTAP 235
>ARI2_CAEEL (Q22431) Probable protein ariadne-2 (Ari-2)| Length = 482 Score = 28.5 bits (62), Expect = 8.4 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = +2 Query: 17 CPPCAKCISKGTGTHRLCSSCSALPCLRCR 106 CP C CI K G C+ + C RCR Sbjct: 287 CPQCHSCIEKAGG-------CNHIQCTRCR 309
>U520_DROME (Q9VUV9) Putative U5 small nuclear ribonucleoprotein 200 kDa| helicase (EC 3.6.1.-) Length = 2142 Score = 28.5 bits (62), Expect = 8.4 Identities = 21/63 (33%), Positives = 31/63 (49%) Frame = +2 Query: 98 RCRTREQRRGEMLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVH 277 R R RE+ RG L ++ +L E +EG+ RG+ K D D G A + GV Sbjct: 348 RQRIREKMRGNSALAKILRQLDTGKSEDQEEGEARGSK-RGKGDAEDGGAAAAGQVAGVR 406 Query: 278 EIL 286 ++L Sbjct: 407 QLL 409
>DNAA_BIFLO (Q8G6K0) Chromosomal replication initiator protein dnaA| Length = 500 Score = 28.5 bits (62), Expect = 8.4 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Frame = +2 Query: 188 EGKIRGTAVLV--KSDVLDL--GDFHASLLDGVHEILGKDDGVSFRLVSATAPDPQNGSR 355 EG T VL +D L GD + SLL + + G++ +F++V T P+P + ++ Sbjct: 43 EGVFGSTIVLCVDNNDTLQAIQGDLNDSLLQALRTVTGENMFPAFKVVPKTEPEPLSEAK 102 Query: 356 GKVGKPAHLEEMV 394 P+ + V Sbjct: 103 PAQPYPSEISPTV 115 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,822,250 Number of Sequences: 219361 Number of extensions: 824792 Number of successful extensions: 3965 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3767 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3944 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)