>ROM1_YEAST (P53046) RHO1 GDP-GTP exchange protein 1 (Protein kinase C|
           suppressor SKC1)
          Length = 1155

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 13/115 (11%)
 Frame = -1

Query: 434 KSSGISLA-PVRAPTYPTPPKSFHKVGLESS--------STGSSFPADSAKPVPLAVVSL 282
           K+SG  +  P +  T PTP  + H + L SS        ST S F  +S K       + 
Sbjct: 163 KNSGSHMGDPNQLSTPPTPKSAGHTMELHSSFNGKHSSSSTSSLFALESLKTQNRRSSNS 222

Query: 281 DSRQGQWESR*SIHARH*LDDE----AFGYLKRVIVTPAVYPRLVEFLHFDIQST 129
            +   Q+    + H RH    +    +   +  +  TP VYP L+  +    + T
Sbjct: 223 SNHSSQYRRHTNQHQRHHSRSKSSPVSLTEISMIKGTPLVYPALLSLIAIKFKQT 277

>HXA4_CHICK (P17277) Homeobox protein Hox-A4 (Chox-1.4)|
          Length = 309

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 419 SLAPVRAPTYPTPPKSFHKVGLESSSTGSSFPADSAKPVP 300
           +L P +AP+YP  P S+   G  S++ G   P   A P P
Sbjct: 95  ALYPAQAPSYPQAPYSYSSAG--SAAPGPEQPPPGASPPP 132

>NPBL_MOUSE (Q6KCD5) Nipped-B-like protein (Delangin homolog) (SCC2 homolog)|
          Length = 2798

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 25/71 (35%), Positives = 36/71 (50%)
 Frame = -2

Query: 223  MTRHLATLRES*LLPPFTRAWLNFFTLTFRALGRNHIASASARTIAMLCFN*TVGFPLSV 44
            + R+LA++R      PF +++  + T   R LG N IA    RT AM C +  V    S 
Sbjct: 1750 IVRYLASMR------PFAQSFDIYLTQILRVLGENAIA---VRTKAMKCLSEVVAVDPS- 1799

Query: 43   PVLSRLFHARG 11
             +L+RL   RG
Sbjct: 1800 -ILARLDMQRG 1809

>NIPBL_HUMAN (Q6KC79) Nipped-B-like protein (Delangin) (SCC2 homolog)|
          Length = 2804

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 25/71 (35%), Positives = 36/71 (50%)
 Frame = -2

Query: 223  MTRHLATLRES*LLPPFTRAWLNFFTLTFRALGRNHIASASARTIAMLCFN*TVGFPLSV 44
            + R+LA++R      PF +++  + T   R LG N IA    RT AM C +  V    S 
Sbjct: 1756 IVRYLASMR------PFAQSFDIYLTQILRVLGENAIA---VRTKAMKCLSEVVAVDPS- 1805

Query: 43   PVLSRLFHARG 11
             +L+RL   RG
Sbjct: 1806 -ILARLDMQRG 1815

>COG1_MOUSE (Q9Z160) Conserved oligomeric Golgi complex component 1 (Low|
           density lipoprotein receptor defect B-complementing
           protein)
          Length = 980

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 267 SLSTIQRNHSQGNGLGGISGERRPC 341
           +L T+ R H  G G+G + GE + C
Sbjct: 293 TLETVTRQHPTGKGIGALQGEMKLC 317

>CD7_HUMAN (P09564) T-cell antigen CD7 precursor (GP40) (T-cell leukemia|
           antigen) (TP41) (Leu-9)
          Length = 240

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -1

Query: 413 APVRAPTYPTPPKSFHKVGLESSSTGSSFPADSAKPVPLAVVS 285
           AP RA   P PP        +++S     PA SA P  LAV+S
Sbjct: 145 APPRASALPAPPTGSALPDPQTASALPDPPAASALPAALAVIS 187

>SCR1_SCHPO (O14335) DNA-binding protein scr1|
          Length = 565

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 434 KSSGISLAPVRAPTYPTPPKSFHKVGLESSSTGSS 330
           KSSG++L P+     P+PPK  + VG   SS+ +S
Sbjct: 251 KSSGVNLMPLS--NAPSPPKQMNVVGSLPSSSNTS 283

>KPB1_RABIT (P18688) Phosphorylase b kinase alpha regulatory chain, skeletal|
            muscle isoform (Phosphorylase kinase alpha M subunit)
          Length = 1237

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
 Frame = -1

Query: 380  PKSFHKVGLESSSTGSSFPADSAKP----VPLAVVSLDSRQGQWESR 252
            P   H +G +  S     P  S  P     P    S DSRQGQW+ R
Sbjct: 1025 PNGGHSLGADLMSPSFLSPGTSVTPSSGSFPGHHTSKDSRQGQWQRR 1071


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,421,316
Number of Sequences: 219361
Number of extensions: 1264483
Number of successful extensions: 3200
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3199
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)