ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl01a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NHS_HUMAN (Q6T4R5) Nance-Horan syndrome protein (Congenital cata... 32 1.2
2TEGU_EHV1B (P28955) Large tegument protein 30 2.6
3MAAY3_SCHCO (P37934) Mating-type protein A-alpha Y3 30 4.4
4FUT4_PANTR (Q659K9) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) ... 28 9.9
5PDXJ_SHEON (Q8EH78) Pyridoxal phosphate biosynthetic protein pdx... 28 9.9
6SERA_THASE (Q9S1H0) Selenate reductase alpha subunit precursor (... 28 9.9
7CLRA_IDEDE (P60068) Chlorate reductase alpha subunit precursor (... 28 9.9

>NHS_HUMAN (Q6T4R5) Nance-Horan syndrome protein (Congenital cataracts and|
           dental anomalies protein)
          Length = 1630

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 325 YRATWEQQASFFRRSVRLRPPKALKTSAQLAREMQRLRQMAKEAHDRKQRYAA 483
           YRA W QQ + F  + R  PP   +      + +Q LR+  +   DR+++ AA
Sbjct: 203 YRAPWHQQRNIFLPATR--PPCVEELHRHARQSLQALRREHRSRSDRREQRAA 253



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>TEGU_EHV1B (P28955) Large tegument protein|
          Length = 3421

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +1

Query: 340 EQQASFFRRSVRLRPPKALKTSAQLAREMQRLRQMAKEAHDR 465
           E+  S FR++ R R  +A +T+A LAR++  +      AHD+
Sbjct: 636 ERIGSLFRKA-RTREARATRTNASLARDLNAIEAAVHAAHDK 676



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>MAAY3_SCHCO (P37934) Mating-type protein A-alpha Y3|
          Length = 926

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = -1

Query: 395 SALGGRSRTLRRKKDACCSQVARYARPSMQSSMPWASSRRS 273
           SA   +SRT R+ +D+  S VA    PS+ S+    SSRRS
Sbjct: 684 SATSRKSRTSRKPRDSSASSVASARTPSLSST----SSRRS 720



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>FUT4_PANTR (Q659K9) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside|
           3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV)
           (Fuc-TIV)
          Length = 405

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 394 APWGAEAGRSGGRRTPAAPRWRDTRG 317
           APWG+    +GGRR     RWR  RG
Sbjct: 3   APWGSPTAAAGGRR-----RWRRGRG 23



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>PDXJ_SHEON (Q8EH78) Pyridoxal phosphate biosynthetic protein pdxJ (PNP|
           synthase)
          Length = 245

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 11/23 (47%), Positives = 19/23 (82%)
 Frame = +1

Query: 397 KTSAQLAREMQRLRQMAKEAHDR 465
           KT+ + A+E++R+R+MAK AH +
Sbjct: 163 KTADEEAKELERIREMAKYAHGK 185



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>SERA_THASE (Q9S1H0) Selenate reductase alpha subunit precursor (EC 1.97.1.9)|
           (Selenate reductase molybdenum subunit)
          Length = 918

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 35  PLHILGQRAERRWRRLFW 88
           PL  +G+R ER+W+R+ W
Sbjct: 134 PLKRVGERGERKWKRISW 151



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>CLRA_IDEDE (P60068) Chlorate reductase alpha subunit precursor (EC 1.97.1.1)|
           (Chlorate reductase molybdenum subunit)
          Length = 914

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 35  PLHILGQRAERRWRRLFW 88
           PL  +G+R ER+W+R+ W
Sbjct: 130 PLKRVGERGERKWKRISW 147


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,902,953
Number of Sequences: 219361
Number of extensions: 821171
Number of successful extensions: 3438
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3437
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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