>RECX_DEIRA (Q9RUS2) Regulatory protein recX|
          Length = 204

 Score = 33.1 bits (74), Expect = 0.37
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +2

Query: 278 ANILSRTAKSRDPLAPPQTATGILKKDWLLKHRTRVPAAVAAMFRADQVTGDPAQW 445
           A+++  T ++RDP    Q A  +L K W    R R P A A  F A +  G    W
Sbjct: 132 ADLIEETLQARDPEEEQQQAIDLLTKRWPALSRKRDPRASAYAFLARRGFGGSVIW 187

>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related|
           protein) (WIP-and CR16-homologous protein)
          Length = 440

 Score = 32.7 bits (73), Expect = 0.48
 Identities = 21/61 (34%), Positives = 26/61 (42%)
 Frame = +2

Query: 161 PPVSLVSIVGCPEMHATISAALSSQQPPMNTLALPDFAKANILSRTAKSRDPLAPPQTAT 340
           PPVS  S  G P+     S A   + P M   +LPD ++ N  S T       APP    
Sbjct: 125 PPVSAAS--GRPQDDTDSSRASLPELPRMQRPSLPDLSRPNTTSSTGMKHSSSAPPPPPP 182

Query: 341 G 343
           G
Sbjct: 183 G 183

>DEAD_KLEPN (P33906) Cold-shock DEAD box protein A (EC 3.6.1.-) (ATP-dependent|
           RNA helicase deaD)
          Length = 642

 Score = 32.3 bits (72), Expect = 0.63
 Identities = 21/47 (44%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -2

Query: 340 RGGLRRRERVAALGGAGEDVGLG---EVREGQRVHGRLLGAERRRDR 209
           RGG  RRE     GG   + G G   E REG R  GR    ERR  R
Sbjct: 571 RGGGERREGGRGFGGERREGGRGFGGERREGGRGEGRRFSGERREGR 617

>SDC3_RAT (P33671) Syndecan-3 precursor (SYND3) (N-syndecan) (Neuroglycan)|
          Length = 442

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 143 PEELRTPPV--SLVSIVGCPEMHATISAALSSQQPPMNTLALPDFAKANILSRTAKSRDP 316
           PE + +PP+   +  +V  P   AT  +  +S      T A P  A A   + T     P
Sbjct: 134 PEPVTSPPLVTEVTEVVEEPSQRATTISTTTSTTAATTTGA-PTMATAPATAATTAPSTP 192

Query: 317 LAPPQTAT 340
            APP TAT
Sbjct: 193 AAPPATAT 200

>SRP2_SCHPO (P78814) Pre-mRNA-splicing factor srp2|
          Length = 365

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 39  RPPTDDYRRPRLRDRSPSARQPRGDREVGRP 131
           RP  D+YRRPR  +  P   + R  R+ GRP
Sbjct: 252 RPHDDEYRRPRGDEYRPGRDEYRRSRDDGRP 282

>MTF1_MOUSE (Q07243) Metal-regulatory transcription factor 1 (Transcription|
           factor MTF-1) (MRE-binding transcription factor)
          Length = 675

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +2

Query: 56  LPPPEAPGPKSFXXXXXXXXXXXXXMEDYPEELRTPPVSLVS----IVGCPEMHATISAA 223
           L PPE P P S               +++    + PP ++V     + G P   AT+++A
Sbjct: 464 LQPPEVPVPHS--------TQFAANHQEFLPHPQAPPQTIVPGLSVVAGAPASAATVASA 515

Query: 224 LSSQQPPMNT 253
           +++  PP +T
Sbjct: 516 VAAPAPPQST 525

>ALL11_ARAHY (P43237) Allergen Ara h 1, clone P17 precursor (Ara h I)|
          Length = 614

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 27  DPSSRPPTDDYRRPRLRDRSPSARQPRGDREVGR 128
           +P  R   +D+R+PR   R PS +QPR  R  GR
Sbjct: 113 EPREREREEDWRQPREDWRRPSHQQPRKIRPEGR 146

>HDAC9_HUMAN (Q9UKV0) Histone deacetylase 9 (HD9) (HD7B) (HD7)|
          Length = 1011

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
 Frame = +2

Query: 194 PEMHATISAALSSQQPPMNTLALPDFAKANILSRTAKS----------RDPLAPPQTATG 343
           P +  T + ALS +Q P+  + +    K  ++SRT  S           D    P +ATG
Sbjct: 575 PFLEPTHTRALSVRQAPLAAVGMDGLEKHRLVSRTHSSPAASVLPHPAMDRPLQPGSATG 634

Query: 344 ILKKDWLLKHR 376
           I     +LKH+
Sbjct: 635 IAYDPLMLKHQ 645

>ALL12_ARAHY (P43238) Allergen Ara h 1, clone P41B precursor (Ara h I)|
          Length = 626

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 30  PSSRPPTDDYRRPRLRDRSPSARQPRGDREVGR 128
           P  R   +D+R+PR   R PS +QPR  R  GR
Sbjct: 120 PREREREEDWRQPREDWRRPSHQQPRKIRPEGR 152

>HELZ_HUMAN (P42694) Probable helicase with zinc-finger domain (EC 3.6.1.-)|
          Length = 1942

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 2/107 (1%)
 Frame = +2

Query: 20   HHRSKLASAHRRLPPPEAPGPKSFXXXXXXXXXXXXXMEDYPEELRTPPVSLVSIVGCPE 199
            H  S    +   LP  E   P+               ++   EE+ TP  SL       +
Sbjct: 1730 HPLSSRTVSSSSLPSLEEYEPRGPGRPLYQRRISSSSVQPCSEEVSTPQDSLAQCKELQD 1789

Query: 200  MHATISAALSSQQPPMNTLALPDFAK--ANILSRTAKSRDPLAPPQT 334
                 S   SS +  +NT +   +     N  SRTA+ R+ +APP+T
Sbjct: 1790 HSNQSSFNFSSPESWVNTTSSTPYQNIPCNGSSRTAQPRELIAPPKT 1836

>STABP_BRARE (Q6TH47) STAM-binding protein-like (EC 3.1.2.15)|
          Length = 418

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 331 DRHGDPQEGLAPQAPDAGA 387
           D HG PQ  L+PQ P AGA
Sbjct: 200 DVHGPPQASLSPQTPPAGA 218

>GSPJ_ECOLI (P45761) Probable general secretion pathway protein J precursor|
          Length = 195

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 296 TAKSRDPLAPPQTATGILKKDWLLKHRT 379
           T +SRDPLAP   A  +L   W L++ T
Sbjct: 86  TTQSRDPLAPLSEAQTLLTVHWYLRNHT 113

>GLTB2_ARATH (Q9T0P4) Ferredoxin-dependent glutamate synthase 2, chloroplast|
           precursor (EC 1.4.7.1) (Fd-GOGAT 2)
          Length = 1629

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +2

Query: 188 GCPEMHATISAALSSQQ-PPMNTLALPDFAKANILSRTAKSRDPLAPPQTATGILKKDWL 364
           G     +++S  LSS +     T+   DF ++  +S+  K R+ L+      G      L
Sbjct: 7   GATGASSSVSRLLSSAKLSSTKTIFSVDFVRSYCISKGTKRRNELS------GFRGYSPL 60

Query: 365 LKHRTRVPAAVAAMFRADQVTGD 433
           LK   R P +V A+  +D+  GD
Sbjct: 61  LKSSLRSPFSVKAILNSDRAAGD 83

>VGLB_BHV1C (P12640) Glycoprotein I precursor (Glycoprotein GVP-6)|
           (Glycoprotein 11A) (Glycoprotein 16) (Glycoprotein G130)
           (Glycoprotein B)
          Length = 932

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -2

Query: 313 VAALGGAGEDVGLGEVREGQRVH---GRLLGAER 221
           +AA GGA    G G+ R GQR H   GR+L A R
Sbjct: 1   MAARGGAERAAGAGDGRRGQRRHLRPGRVLAALR 34

>VGLB_BHV1P (P17471) Glycoprotein I precursor (Glycoprotein GVP-6)|
           (Glycoprotein 11A) (Glycoprotein 16) (Glycoprotein G130)
          Length = 928

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -2

Query: 313 VAALGGAGEDVGLGEVREGQRVH---GRLLGAER 221
           +AA GGA    G G+ R GQR H   GR+L A R
Sbjct: 1   MAARGGAERAAGAGDGRRGQRRHLRPGRVLAALR 34

>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 140 YPEELRTPPVSLVSIVGCPEMHATISAALSSQQP 241
           YP +    P SL ++ GCP   A  +AA S QQP
Sbjct: 582 YPRDEAGRPDSLAAVAGCPAQAA--AAAASQQQP 613

>ARNT_HUMAN (P27540) Aryl hydrocarbon receptor nuclear translocator (ARNT|
           protein) (Dioxin receptor, nuclear translocator)
           (Hypoxia-inducible factor 1 beta) (HIF-1 beta)
          Length = 789

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = +2

Query: 8   GTASHHRSKLASAHRRLPPPEAPG-PKSFXXXXXXXXXXXXXM--EDYPEELRTPPVS 172
           G   HHRS  +  H + PP + PG P+ F                E++P+    PP S
Sbjct: 731 GQQPHHRSSSSEQHVQQPPAQQPGQPEVFQEMLSMLGDQSNSYNNEEFPDLTMFPPFS 788

>NEB2_RAT (O35274) Neurabin-2 (Neurabin-II) (Spinophilin) (Protein|
          phosphatase 1 regulatory subunit 9B) (Neural
          tissue-specific F-actin-binding protein II) (p130)
          (PP1bp134)
          Length = 817

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 11 TASHHRSKLASAHRRLPPPEAPGP 82
          +AS HRS   +  + L PP+APGP
Sbjct: 15 SASPHRSAYEAGIQALKPPDAPGP 38

>NEB2_MOUSE (Q6R891) Neurabin-2 (Neurabin-II) (Spinophilin) (Protein|
          phosphatase 1 regulatory subunit 9B)
          Length = 817

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 11 TASHHRSKLASAHRRLPPPEAPGP 82
          +AS HRS   +  + L PP+APGP
Sbjct: 15 SASPHRSAYEAGIQALKPPDAPGP 38

>MOAC_DEIRA (Q9RRC1) Molybdenum cofactor biosynthesis protein C|
          Length = 168

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 16  QPSQIQARVRPPTTTAARGSGTEVLPPGSLAA 111
           QP  +    + PTT  AR     +LPP S AA
Sbjct: 18  QPRMVDVSAKAPTTRTARAEAWVLLPPESRAA 49

>ACCA_GEOSL (Q74DB5) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase
           carboxyltransferase subunit alpha) (ACCase subunit
           alpha)
          Length = 313

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 375 RCLRSQSFLRIPVAVC----GGASGSRLLAVRERMLALAKSGRASVFMGGC 235
           R LR  + L +P+ V     GG+ G+  +AV +R+L L  S  A +   GC
Sbjct: 174 RNLREMAALTVPIIVVVTGEGGSGGALAIAVGDRVLMLQYSIYAVISPEGC 224

>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding|
           protein MBD6)
          Length = 1003

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +2

Query: 140 YPEELRTPPVSLVSIVGCPEMHATISAALSSQQPPMNTLALPDFAKANILSRTAKSRD-P 316
           +P     PPVS  +      MH  +        P +     P F  +++LS  AK++  P
Sbjct: 281 HPGPASQPPVSSAT------MHLPLVLGPLGGAPTVEGPGAPPFLASSLLSAAAKAQHPP 334

Query: 317 LAPPQTATG 343
           L PP T  G
Sbjct: 335 LPPPSTLQG 343

>ASTD_PSEAE (O50174) Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.-)|
          Length = 488

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = -3

Query: 402 AATAAGTRVRCLRSQSFLRIPVAVCGGASGSRLLAVRERMLALAKSGRASVFMGGCWELS 223
           A  +AG R  C R    L +P    G A  +RL+AV   +       + + FMG    LS
Sbjct: 271 AFISAGQRCTCARR---LLVPQGAWGDALLARLVAVSATLRVGRFDEQPAPFMGAVISLS 327

Query: 222 AAE 214
           AAE
Sbjct: 328 AAE 330

>CI066_HUMAN (Q5T8R8) Protein C9orf66|
          Length = 295

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = -1

Query: 122 HLPVAARLPGGRTSVPEPRAAVVVGGRTR 36
           HLP AARLPG      EP  A  VG   R
Sbjct: 265 HLPEAARLPGNVGKSGEPHKAGEVGNHPR 293

>NEB2_HUMAN (Q96SB3) Neurabin-2 (Neurabin-II) (Spinophilin) (Protein|
          phosphatase 1 regulatory subunit 9B)
          Length = 815

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 11 TASHHRSKLASAHRRLPPPEAPGP 82
          +AS HRS   +  + L PP+APGP
Sbjct: 15 SASPHRSAYEAGIQALKPPDAPGP 38


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.131    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,099,660
Number of Sequences: 219361
Number of extensions: 1101098
Number of successful extensions: 3522
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3513
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)