>YEM7_YEAST (P40025) Hypothetical 37.7 kDa protein in PIP1-GLN3 intergenic|
           region
          Length = 321

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
 Frame = +1

Query: 103 FDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLMGY 282
           FD+D+T+Y  S  + L  ++++ ++   +L  ++    ++    Y+EYG ++ GL     
Sbjct: 57  FDIDNTLYRKSTKVQLLMQQSLSNFFKYELGFDDDEAERLIESYYQEYGLSVKGLIKNKQ 116

Query: 283 DFDYDQFHASVHGKLPYEK-LKPDPVLRSLLISMPQRKI-------IFTNS 411
             D  Q++  +   LP +  LKPD  LR LLI++ ++K+       +FTNS
Sbjct: 117 IDDVLQYNTFIDDSLPLQDYLKPDWKLRELLINLKKKKLGKFDKLWLFTNS 167

>YAI5_SCHPO (Q09893) Hypothetical protein C24B11.05 in chromosome I|
          Length = 226

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
 Frame = +1

Query: 97  LLFDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLM 276
           + FD+D+ +YP S  I+      I  +  DKL I      ++    YR YG  + GL ++
Sbjct: 8   IFFDLDNCLYPKSYKIHNMMAARITAFFSDKLGIPTEEAERLREVYYRHYGIAIRGL-VL 66

Query: 277 GYDFDYDQFHASVHGKLPYEK-LKPDPVLRSLLISMPQRK--IIFTNS 411
            ++ D   +   V   LP EK +K D VLR +L+ + ++    IFTN+
Sbjct: 67  HHEIDAVDYDQRVDQSLPLEKVIKKDEVLREMLLELRKKYKCWIFTNA 114

>SSM1_YEAST (P53078) Protein SSM1|
          Length = 280

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
 Frame = +1

Query: 103 FDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLMGY 282
           FD+D+ +Y  S  I+   +++I  +    L++       +    Y+EYG  + GL +M +
Sbjct: 60  FDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGL-VMFH 118

Query: 283 DFDYDQFHASVHGKLPYEK-LKPDPVLRSLLISMPQ-----RKIIFTNS 411
             +  +++  V   LP +  LKPD  LR++L+ + Q     +  +FTN+
Sbjct: 119 KVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNA 167

>MEGF6_RAT (O88281) Multiple epidermal growth factor-like domains 6 precursor|
           (EGF-like domain-containing protein 3) (Multiple
           EGF-like domain protein 3)
          Length = 1574

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = -3

Query: 217 WGPGSPRSEVCPACSLGCSC----GMLS*FPSLVGRWCHPCQTAG 95
           WG G    E+CPAC  G SC    G     P  VG  C    +AG
Sbjct: 782 WGLGC--QEICPACEHGASCNPETGTCLCLPGFVGSRCQDTCSAG 824

>TNAP3_HUMAN (P21580) Tumor necrosis factor, alpha-induced protein 3 (EC|
           3.-.-.-) (Putative DNA-binding protein A20) (Zinc finger
           protein A20)
          Length = 790

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 144 QLSMPQEHPRLHAGQTSDRGEPGPQDVPR 230
           +L M  +HP    G  + RGEP P+D P+
Sbjct: 731 ELCMECQHPNQRMGPGAHRGEPAPEDPPK 759

>TNAP3_MACFA (Q4R8W3) Tumor necrosis factor, alpha-induced protein 3 (EC|
           3.-.-.-)
          Length = 790

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 144 QLSMPQEHPRLHAGQTSDRGEPGPQDVPR 230
           +L M  +HP    G  + RGEP P+D P+
Sbjct: 731 ELCMECQHPNPRMGPGAHRGEPAPEDPPK 759

>Y1655_PYRHO (O59346) Putative HAD-hydrolase PH1655 (EC 3.-.-.-)|
          Length = 241

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 97  LLFDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLM 276
           + FD+DDT+   S    +A +  I++ +   L ++        ++L +EYG+        
Sbjct: 5   IFFDLDDTLVDTSKLAEIARKNAIENMIRHGLPVDFETAYSELIELIKEYGSNFP----- 59

Query: 277 GYDFDY 294
            Y FDY
Sbjct: 60  -YHFDY 64

>IE4_VZVD (P09269) Transcriptional transactivator IE4 (Immediate-early|
           protein 4) (IE4)
          Length = 452

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = +3

Query: 171 RLHAGQTSDRGEPGPQDVPRFVQGIRNYNGRSETYGLRFRLRSIPRQRARK 323
           R H  ++       P   P    G RN     E+Y LRF  R   R+R RK
Sbjct: 130 RKHRDRSLSNRRRRPTTPPAMTTGERNDQTHDESYRLRFSKRDARRERIRK 180

>Y1777_PYRFU (Q8U040) Putative HAD-hydrolase PF1777 (EC 3.-.-.-)|
          Length = 240

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 97  LLFDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLM 276
           + FD+DDT+   S    +A +  I++ +   + ++        L+L +EYG+        
Sbjct: 7   IFFDLDDTLVDTSKLAEVARKNAIENMIRHGMPVDFDTAYNELLELIKEYGSNFP----- 61

Query: 277 GYDFDY 294
            Y FDY
Sbjct: 62  -YHFDY 66

>FBN3_HUMAN (Q75N90) Fibrillin-3 precursor|
          Length = 2809

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 238 CTNLGTSWGPGSPRSEVCPACSLG 167
           C  LG +WG    R E+ PAC+ G
Sbjct: 835 CATLGAAWGSPCERCEIDPACARG 858

>SYFB_PROMP (Q7V1J8) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 821

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
 Frame = +1

Query: 46  PQPVKMESYANGAKFDCLLFDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMC 225
           P  ++ E+Y N +K +       +    L L   + C  NI++Y  D       ++P   
Sbjct: 432 PIVIRNENYENNSKLEKRYLTDTEITEKLKL---IGCTLNIKEYGWDV-----EIIPNRS 483

Query: 226 LDLYREYGTTMAGLKLMGYD-FDYDQFHASVHGKL 327
            DL RE        +L+GYD FD +  +    GKL
Sbjct: 484 QDLLREIDLIEEIARLIGYDMFDLNLPNPIKPGKL 518

>UBP8_SCHPO (Q09738) Probable ubiquitin carboxyl-terminal hydrolase 8 (EC|
           3.1.2.15) (Ubiquitin thioesterase 8) (Ubiquitin-specific
           processing protease 8) (Deubiquitinating enzyme 8)
          Length = 449

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 22/92 (23%), Positives = 38/92 (41%)
 Frame = +1

Query: 103 FDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLMGY 282
           F   D +Y   L       KNI+ +  D  ++ E     +CL+ YR+Y    A   L G 
Sbjct: 88  FGCQDYVYQTELETLRFKIKNIKAWQSDHKRLPEKYNQMVCLEAYRKYPPVCATAGLRG- 146

Query: 283 DFDYDQFHASVHGKLPYEKLKPDPVLRSLLIS 378
                   A+    +  + +  +P++R+L  S
Sbjct: 147 ---IQNLGATCFMSVILQSILHNPLVRNLFFS 175

>YB10_PYRAB (Q9V1B3) Putative HAD-hydrolase PYRAB05140 (EC 3.-.-.-)|
          Length = 238

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 97  LLFDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLM 276
           + FD+DDT+   +    LA R  I++ +   L ++        ++L +EYG+        
Sbjct: 5   IFFDLDDTLVDTTKLAELARRNAIENMIRHGLPVDFETAYSELMELIKEYGSNFP----- 59

Query: 277 GYDFDY 294
            + FDY
Sbjct: 60  -HHFDY 64

>Y1956_THETN (Q8R8N9) Protein TTE1956|
          Length = 458

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = +1

Query: 193 QIEESLVPKMCLDLYREYGTTMAGLKLMGYDFDYDQFHASVHGKLPYEKLKPDPVLRSLL 372
           ++ E L+ K  L    ++GT +    +  +  D+   H S +G LP+EKL    V     
Sbjct: 107 EVSEELIKKYVLPKKLDHGTIVPLYFVTKHYPDFKLIHMS-YGFLPFEKLYEFGVAIKDA 165

Query: 373 ISMPQRKIIFTNS 411
           I+   R+++F  S
Sbjct: 166 INKSDRRVVFIAS 178

>IPF1_HUMAN (P52945) Insulin promoter factor 1 (IPF-1) (Pancreas/duodenum|
           homeobox 1) (PDX-1) (Islet/duodenum homeobox-1) (IDX-1)
           (Somatostatin-transactivating factor 1) (STF-1) (Insulin
           upstream factor 1) (IUF-1) (Glucose-sensitive factor)
           (GSF)
          Length = 283

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 21/48 (43%), Positives = 25/48 (52%)
 Frame = +3

Query: 96  PAV*HG*HHLPTKLGNQLSMPQEHPRLHAGQTSDRGEPGPQDVPRFVQ 239
           PAV H  HHLP     QL++P  HP   AG   +  EPG  + P  VQ
Sbjct: 77  PAVAHLHHHLPA----QLALP--HP--PAGPFPEGAEPGVLEEPNRVQ 116

>YUEB_BACSU (O32101) Bacteriophage SPP1 adsorption protein yueB (Bacteriophage|
            SPP1 receptor protein yueB)
          Length = 1076

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 229  DLYREYGTTMAGLKLMGYDFDYDQFHASVHGKLPYEKLKPDPVLRSLLI 375
            D+Y   G T+   +  GY +DY      + G++P EK++  P +  L+I
Sbjct: 865  DVYGILGNTLVDGQNNGYVYDYLANPLKISGEVPEEKIQTVPPVVILVI 913

>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
           (High molecular weight salivary mucin MG1) (Sublingual
           gland mucin)
          Length = 5703

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 241 PCTNLGTSWGPGSPRSEVCPACSLGCSCGM 152
           PCT+ G ++ PG+  +  C +C+  CS G+
Sbjct: 387 PCTHGGRTYSPGTSFNTTCSSCT--CSGGL 414

>HSC20_HUMAN (Q8IWL3) Co-chaperone protein HscB, mitochondrial precursor (Hsc20)|
          Length = 235

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 238 CTNLGTSWGPGSPRSEVCPAC 176
           C N G  WGPG      CP C
Sbjct: 41  CWNCGGPWGPGREDRFFCPQC 61

>YFBM_ECOLI (P76483) Protein yfbM|
          Length = 167

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 253 TMAGLKLMGYDFDYDQFHASVHGKLPYEKLKPDPVLRSLL 372
           T++GL+ +  D  +D  H  + G   ++  K DP+ R++L
Sbjct: 33  TLSGLRRLDIDKRWDFLHFGLTGTSAFDPAKNDPLSRAVL 72

>SYI_PYRAE (Q8ZWU4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 981

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +1

Query: 142 INLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKL 273
           + L  +K+I+ + L+K  +E + + +  L  +RE+GT   GL L
Sbjct: 102 LKLRSKKDIEQFGLEKFALECNSLVEEYLAYWREWGTKRLGLWL 145

>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)|
            (Usher syndrome type IIa protein homolog)
          Length = 5193

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 196  SEVCPACSLGCSCGMLS*FPSLVGRWCHPCQ 104
            S +C + +  CSC      PS  GR CH CQ
Sbjct: 957  SHICNSVTGQCSCHD----PSTTGRSCHQCQ 983

>DUS23_HUMAN (Q9BVJ7) Dual specificity protein phosphatase 23 (EC 3.1.3.48) (EC|
           3.1.3.16) (Low molecular mass dual specificity
           phosphatase 3) (LDP-3) (VH1-like phosphatase Z)
          Length = 150

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 174 LHAGQTSDRGEPGPQDVPRFVQGIRNYNGRSETYGLRFRL 293
           LH  +  D   P P  + RFVQ +   N R E  G+   L
Sbjct: 58  LHRLRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCAL 97

>APY_SOLTU (P80595) Apyrase precursor (EC 3.6.1.5) (ATP-diphosphatase)|
           (Adenosine diphosphatase) (ADPase)
           (ATP-diphosphohydrolase)
          Length = 454

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
 Frame = +1

Query: 115 DTIYPLSLG--------INLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLK 270
           DT +P +L           +AC+ N+ D      + ++  +P +C+DL  EY   + G  
Sbjct: 350 DTKFPSALAKPIQYLNAAKVACQTNVADIKSIFPKTQDRNIPYLCMDLIYEYTLLVDGFG 409

Query: 271 L 273
           L
Sbjct: 410 L 410

>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +3

Query: 183  GQTSDRGEPGPQDVPRFVQGIRNYNGRSETYG 278
            G   DRG+PGPQ  P    G R   G S   G
Sbjct: 2003 GLKGDRGDPGPQGPPGLALGERGPPGPSGLAG 2034


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,513,611
Number of Sequences: 219361
Number of extensions: 1221347
Number of successful extensions: 3808
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3803
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)