ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart61h10 |
|---|---|
| Clone Library Name | barley_pub |
>UL38_HCMVA (P16779) Protein UL38| Length = 331 Score = 32.7 bits (73), Expect = 0.23 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 10/78 (12%) Frame = +1 Query: 46 AHKQETREAGSQPASQPAMEVMSSIAVLLLPCC----------SLTAATAPAGTIERVSK 195 AH Q T G+QP+ PA V+S+ L LP S +AAT P ++ S Sbjct: 241 AHIQAT---GAQPSHAPAQRVLSAPPSLPLPVSEEDPAAAATPSSSAATTPPSSVVPASV 297 Query: 196 QQILASIPPGGHTSPPVL 249 + L+S PP PPV+ Sbjct: 298 ESELSSSPP----LPPVV 311
>HISX2_BACSK (Q5WDH8) Histidinol dehydrogenase 2 (EC 1.1.1.23) (HDH 2)| Length = 425 Score = 31.6 bits (70), Expect = 0.50 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = +1 Query: 130 LLPCCSLTAATAPAGTIERVSKQQILASIPPGGHTSPPVLFLTSPSGKYAAYFMRA 297 L P TAA TI ++ Q +A++ G T PV +T P KY A RA Sbjct: 162 LPPAVLATAAELGVHTIYKLGGAQAVAALAYGTETVRPVDKITGPGNKYVALAKRA 217
>DHB_CRAPL (P22239) Desiccation-related protein clone PCC6-19 (CDET6-19)| Length = 155 Score = 30.0 bits (66), Expect = 1.5 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 10/48 (20%) Frame = -3 Query: 342 VAKVGAEPAGAWH----------GVSAHEVGRVLAGGRREEQHGRAGV 229 +A+ G E G H G AH G ++ GG++ QHG GV Sbjct: 1 MAQFGGEKYGGRHTDEYGNPIQQGAGAHRGGGIMGGGQQAGQHGTTGV 48
>ENL2_ARATH (Q9T076) Early nodulin-like protein 2 precursor (Phytocyanin-like| protein) Length = 349 Score = 27.7 bits (60), Expect(2) = 1.6 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = +2 Query: 221 QEGTPARPCCSSRLPPASTRPTSCALTPCQAP 316 + G+P P S PP ST P S + P +P Sbjct: 206 KSGSPVSPTTSPPAPPKSTSPVSPSSAPMTSP 237 Score = 20.8 bits (42), Expect(2) = 1.6 Identities = 9/28 (32%), Positives = 12/28 (42%) Frame = +1 Query: 160 TAPAGTIERVSKQQILASIPPGGHTSPP 243 T P G S + + P G T+PP Sbjct: 154 TPPGGAHSPKSSSPVSPTTSPPGSTTPP 181
>KR105_HUMAN (P60370) Keratin-associated protein 10-5 (Keratin-associated| protein 10.5) (High sulfur keratin-associated protein 10.5) (Keratin-associated protein 18-5) (Keratin-associated protein 18.5) Length = 271 Score = 29.6 bits (65), Expect = 1.9 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +2 Query: 224 EGTPARPCCSSRLPPASTRPTSCALTPCQ 310 E +P + C+S P+ +P CA +PCQ Sbjct: 57 EPSPCQSGCTSSCTPSCCQPACCASSPCQ 85
>SYH_DEHSC (Q3ZWB6) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 418 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +2 Query: 242 PCCSSRLPPASTRPTSCALTPCQAPAGSAPTFA 340 P C++RL + R C CQA AG+AP A Sbjct: 191 PDCNTRLDKNTLRLLDCKRAECQAVAGNAPRSA 223
>INH_YERRU (Q8VLP6) Alkaline proteinase inhibitor precursor (Metalloprotease| inhibitor) Length = 124 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = +1 Query: 199 QILASIPPGGHTSPPVLFLTSPSGKYAAYFMRA-----HTVPGAGGL 324 Q+L S P G +P + LT +G A+F RA +T+P G+ Sbjct: 70 QLLGSAPQGWRPTPDGIMLTDETGSAVAFFERAQNGYENTLPDDAGV 116
>PITX3_RAT (P81062) Pituitary homeobox 3 (Homeobox protein PTX3)| Length = 302 Score = 28.9 bits (63), Expect = 3.3 Identities = 20/47 (42%), Positives = 24/47 (51%) Frame = +1 Query: 85 ASQPAMEVMSSIAVLLLPCCSLTAATAPAGTIERVSKQQILASIPPG 225 ASQP SSIA ++P +AA AP GT+ Q L PPG Sbjct: 183 ASQPVFSPPSSIAASMVP----SAAAAP-GTVPGPGALQGLGGAPPG 224
>PITX3_MOUSE (O35160) Pituitary homeobox 3 (Homeobox protein PITX3)| Length = 302 Score = 28.9 bits (63), Expect = 3.3 Identities = 20/47 (42%), Positives = 24/47 (51%) Frame = +1 Query: 85 ASQPAMEVMSSIAVLLLPCCSLTAATAPAGTIERVSKQQILASIPPG 225 ASQP SSIA ++P +AA AP GT+ Q L PPG Sbjct: 183 ASQPVFSPPSSIAASMVP----SAAAAP-GTVPGPGALQGLGGAPPG 224
>RPOA_SHFV (Q68772) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP1 Length = 3596 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/31 (41%), Positives = 15/31 (48%) Frame = +2 Query: 221 QEGTPARPCCSSRLPPASTRPTSCALTPCQA 313 Q G +P + PAS T CAL P QA Sbjct: 538 QVGCETKPVADAAAVPASVNSTGCALLPVQA 568
>NAS6_HORVU (Q9ZQV3) Probable nicotianamine synthase 6 (EC 2.5.1.43)| (S-adenosyl-L-methionine:S-adenosyl-L-methionine:S- adenosyl-methionine 3-amino-3-carboxypropyltransferase 6) (HvNAS6) Length = 328 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +1 Query: 199 QILASIPPGGHTSPPVLFLTSPSGKYAAYFMRAHTVPGAGGLGADFC 339 ++LA PGG P V F+ S +++Y + A +P A D C Sbjct: 114 ELLARYVPGGIARPAVAFIGSGPLPFSSYVLAARHLPDAMFDNYDLC 160
>GSC_MOUSE (Q02591) Homeobox protein goosecoid| Length = 256 Score = 28.5 bits (62), Expect = 4.3 Identities = 10/29 (34%), Positives = 13/29 (44%) Frame = +2 Query: 218 HQEGTPARPCCSSRLPPASTRPTSCALTP 304 H + P P C +PP + SC TP Sbjct: 89 HVQAAPVGPACCGAVPPLGAQQCSCVPTP 117
>GSC_HUMAN (P56915) Homeobox protein goosecoid| Length = 257 Score = 28.5 bits (62), Expect = 4.3 Identities = 10/29 (34%), Positives = 13/29 (44%) Frame = +2 Query: 218 HQEGTPARPCCSSRLPPASTRPTSCALTP 304 H + P P C +PP + SC TP Sbjct: 89 HVQAAPVGPACCGAVPPLGAQQCSCVPTP 117
>PIM2_MOUSE (Q62070) Serine/threonine-protein kinase Pim-2 (EC 2.7.11.1)| Length = 370 Score = 28.1 bits (61), Expect = 5.6 Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 3/43 (6%) Frame = +1 Query: 217 PPGGHTSPPVLFLTSPSGKYAAYF---MRAHTVPGAGGLGADF 336 P GH SPPV P GK A F R + G GG G F Sbjct: 64 PLQGHPSPPVTPTQPPGGKDRAAFEAEYRLGPLLGKGGFGTVF 106
>Y411_STAAC (Q5HIV4) Hypothetical UPF0324 membrane protein SACOL0411| Length = 331 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 1/19 (5%) Frame = -3 Query: 315 GAWHGVSAHEVGR-VLAGG 262 GAW GVS HE+ VLAGG Sbjct: 184 GAWSGVSLHEIAHVVLAGG 202
>Y341_STAAM (Q99WN6) Hypothetical UPF0324 membrane protein SAV0341| Length = 331 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 1/19 (5%) Frame = -3 Query: 315 GAWHGVSAHEVGR-VLAGG 262 GAW GVS HE+ VLAGG Sbjct: 184 GAWSGVSLHEIAHVVLAGG 202
>Y338_STAAR (Q6GJX7) Hypothetical UPF0324 membrane protein SAR0338| Length = 331 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 1/19 (5%) Frame = -3 Query: 315 GAWHGVSAHEVGR-VLAGG 262 GAW GVS HE+ VLAGG Sbjct: 184 GAWSGVSLHEIAHVVLAGG 202
>Y329_STAAN (Q7A7M5) Hypothetical UPF0324 membrane protein SA0329| Length = 331 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 1/19 (5%) Frame = -3 Query: 315 GAWHGVSAHEVGR-VLAGG 262 GAW GVS HE+ VLAGG Sbjct: 184 GAWSGVSLHEIAHVVLAGG 202
>Y317_STAAW (Q8NYA5) Hypothetical UPF0324 membrane protein MW0317| Length = 331 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 1/19 (5%) Frame = -3 Query: 315 GAWHGVSAHEVGR-VLAGG 262 GAW GVS HE+ VLAGG Sbjct: 184 GAWSGVSLHEIAHVVLAGG 202
>Y317_STAAS (Q6GCD1) Hypothetical UPF0324 membrane protein SAS0317| Length = 331 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 1/19 (5%) Frame = -3 Query: 315 GAWHGVSAHEVGR-VLAGG 262 GAW GVS HE+ VLAGG Sbjct: 184 GAWSGVSLHEIAHVVLAGG 202
>HIRA_MOUSE (Q61666) HIRA protein (TUP1-like enhancer of split protein 1)| Length = 1015 Score = 28.1 bits (61), Expect = 5.6 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 6/89 (6%) Frame = +1 Query: 76 SQPASQPAMEVMSSIAVL--LLPCCSLTAATAPAGTIERVSKQQILASIPPGGHTSPPVL 249 S P+ Q + + SS PC AAT+ T E VSK + A+ P +SP VL Sbjct: 494 SSPSGQQLLPLDSSTPSFGASKPCTEPVAATSARPTGESVSKDSMNATSTPAA-SSPSVL 552 Query: 250 FLTS---PSGKYAAYFM-RAHTVPGAGGL 324 S P + + F R+ PGA L Sbjct: 553 TTPSKIEPMKAFDSRFTERSKATPGAPSL 581
>NKX61_HUMAN (P78426) Homeobox protein Nkx-6.1| Length = 367 Score = 28.1 bits (61), Expect = 5.6 Identities = 18/71 (25%), Positives = 32/71 (45%) Frame = +1 Query: 70 AGSQPASQPAMEVMSSIAVLLLPCCSLTAATAPAGTIERVSKQQILASIPPGGHTSPPVL 249 +GS +S + S+ A + AA++PAG + + + L+ PP PP L Sbjct: 121 SGSSSSSSSSASASSASAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPPPP-----PPGL 175 Query: 250 FLTSPSGKYAA 282 + + + AA Sbjct: 176 YFSPSAAAVAA 186
>HSP83_ARATH (P51818) Heat shock protein 81-3 (HSP81-3) (HSP81.2)| Length = 699 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = +1 Query: 103 EVMSSIAVLLLPCCSLTAATAPAGTIERVSKQQILASIPPGGHTS 237 +V+ S V+ PCC +T +ER+ K Q L GG+ S Sbjct: 556 KVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMGGYMS 600
>RNFD_RHOCA (Q52715) Electron transport complex protein rnfD (Nitrogen fixation| protein rnfD) Length = 358 Score = 27.7 bits (60), Expect = 7.3 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%) Frame = +1 Query: 58 ETREAGSQPASQ-PAMEVMSSIAVLLLPCCSLTAATAPAGTIERVSKQQILASIPPGGHT 234 E+R G P S V+ ++ LLL + T P + + + S Sbjct: 200 ESRLLGFVPGSLGETSTVLLALGGLLLLVTRIITPTIPLAVLGTLVTLSAICSFLAPDRF 259 Query: 235 SPPVLFLTSPSGKYAAYFM 291 +PP+L LTS S A+F+ Sbjct: 260 APPILHLTSGSTMLCAFFI 278
>FDHD_XANAC (Q8PJP3) Protein fdhD homolog| Length = 281 Score = 27.7 bits (60), Expect = 7.3 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -1 Query: 188 TRSIVPAGAVAAVREQQGSRSTAMEDMTS 102 +RS+ P V VR +G RS ++DM + Sbjct: 6 SRSVRPGSVVRTVRRHRGGRSATVQDMVA 34
>AMPH_RAT (O08838) Amphiphysin| Length = 683 Score = 27.7 bits (60), Expect = 7.3 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Frame = +1 Query: 58 ETREAGSQPASQPAMEVMSSIAVLLLPCCSLTAATAPAGTIE-RVSKQQILASIPPG 225 ETREA A Q +A P S A APAG ++ +S +PPG Sbjct: 554 ETREATEDVAPQGPAGEKQELATEPTPLDSQAATPAPAGAVDASLSAGDAAQELPPG 610
>PITX3_HUMAN (O75364) Pituitary homeobox 3 (Homeobox protein PITX3)| Length = 302 Score = 27.7 bits (60), Expect = 7.3 Identities = 20/47 (42%), Positives = 24/47 (51%) Frame = +1 Query: 85 ASQPAMEVMSSIAVLLLPCCSLTAATAPAGTIERVSKQQILASIPPG 225 ASQP SSIA ++P +AA AP GT+ Q L PPG Sbjct: 183 ASQPVFSPPSSIAASMVP----SAAAAP-GTVPGPGALQGLGGGPPG 224
>NOTC3_RAT (Q9R172) Neurogenic locus notch homolog protein 3 precursor (Notch 3)| [Contains: Notch 3 extracellular truncation; Notch 3 intracellular domain] Length = 2319 Score = 27.7 bits (60), Expect = 7.3 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 5/42 (11%) Frame = +2 Query: 227 GTPARPCCSSRLPPASTRPTSCALTPCQ-----APAGSAPTF 337 G C SR P+ TSCA TPC P S P F Sbjct: 1320 GLSGPSCRVSRASPSGATNTSCAATPCLHGGSCLPVQSVPFF 1361
>RIMB1_HUMAN (O95153) Peripheral-type benzodiazepine receptor-associated protein| 1 (PRAX-1) (Peripheral benzodiazepine receptor-interacting protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1) Length = 1857 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%) Frame = +1 Query: 166 PAGTIERVSKQQILASIPPG----GHTSPPVLFLTSPSG 270 P+ +ERVS +L S+PP H+S P L S G Sbjct: 711 PSNFVERVSDDDLLTSLPPELADLSHSSGPELSFLSVGG 749
>H12_ARATH (P26569) Histone H1.2| Length = 273 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/51 (27%), Positives = 28/51 (54%) Frame = +1 Query: 67 EAGSQPASQPAMEVMSSIAVLLLPCCSLTAATAPAGTIERVSKQQILASIP 219 +A ++ +PA +V++ V P +TAA + ++ VSK + +A+ P Sbjct: 167 KAAAKGTKKPAAKVVAKAKVTAKPKAKVTAAKPKSKSVAAVSKTKAVAAKP 217
>HISX_PELLD (Q3B5E3) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 443 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +1 Query: 154 AATAPAGTIERVSKQQILASIPPGGHTSPPVLFLTSPSGKYAA 282 A+ A ++ R+ Q +A+ G T P V +T P KY A Sbjct: 188 ASVAGVTSVYRLGGAQAVAAFAYGTQTIPKVDIITGPGNKYVA 230
>Y220_SILPO (Q5LX20) UPF0247 protein SPO0220| Length = 156 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = -1 Query: 185 RSIVPAGAVAAVREQQGSRSTAMEDMTSMAGW 90 R +PAGAV +++G + ++ + MAGW Sbjct: 60 RKALPAGAVLCTLDERGKQLSSPDFADRMAGW 91
>MILK1_MOUSE (Q8BGT6) Molecule interacting with Rab13 (MIRab13) (MICAL-like| protein 1) Length = 870 Score = 27.3 bits (59), Expect = 9.5 Identities = 15/38 (39%), Positives = 17/38 (44%) Frame = +2 Query: 221 QEGTPARPCCSSRLPPASTRPTSCALTPCQAPAGSAPT 334 +EG PA P S L P P+ P APA S T Sbjct: 429 EEGEPAPPVPSPSLAPPVPSPSPAPPVPSPAPAPSEAT 466
>HISX_BACHD (Q9K6Z2) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 424 Score = 27.3 bits (59), Expect = 9.5 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = +1 Query: 148 LTAATAPAGTIERVSKQQILASIPPGGHTSPPVLFLTSPSGKYAAYFMRA 297 +TAA TI +V Q +A++ G + P V +T P Y A RA Sbjct: 166 VTAAELGVKTILKVGGAQAIAALAYGTESVPAVDKITGPGNIYVALAKRA 215
>LYSK_THET2 (Q8VUS5) Acetyl-lysine deacetylase (EC 3.5.1.-)| Length = 361 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -3 Query: 324 EPAGAWHGVSAHEVGRVLAGGRREEQH 244 EP+G W G++ GR+L RRE+ H Sbjct: 148 EPSG-WEGITLGYKGRLLVKARREKDH 173
>GRN_CAVPO (P28797) Granulins precursor (Proepithelin) (PEPI) [Contains:| Acrogranin; Granulin-1; Granulin-2; Granulin-3; Granulin-4; Granulin-5; Granulin-6; Granulin-7] (Fragment) Length = 591 Score = 27.3 bits (59), Expect = 9.5 Identities = 17/42 (40%), Positives = 20/42 (47%) Frame = -1 Query: 254 RNSTGGLVCPPGGMLARICCLDTRSIVPAGAVAAVREQQGSR 129 R+S GG C P +CC D R PAG E QG+R Sbjct: 532 RDSRGGWACCP--FHQGVCCKDQRHCCPAGFHC---ESQGTR 568
>RGS3_HUMAN (P49796) Regulator of G-protein signaling 3 (RGS3) (RGP3)| Length = 1198 Score = 27.3 bits (59), Expect = 9.5 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Frame = +2 Query: 224 EGTPARPCC--SSRLPPASTRPTSCALTPCQ-APAGSAP 331 EG+P P S +PP P + L+PCQ PAG P Sbjct: 750 EGSPPGPDAPPSKDVPPCQEPPPAQDLSPCQDLPAGQEP 788
>AB14B_PONPY (Q5R816) Abhydrolase domain-containing protein 14B| (CCG1-interacting factor B) Length = 210 Score = 27.3 bits (59), Expect = 9.5 Identities = 21/58 (36%), Positives = 28/58 (48%) Frame = +1 Query: 154 AATAPAGTIERVSKQQILASIPPGGHTSPPVLFLTSPSGKYAAYFMRAHTVPGAGGLG 327 AA AP G + S LA++ PPV+ S SG Y+ F+ T PG+ LG Sbjct: 79 AAPAPIGELAPGS---FLAAVVDALELGPPVVISPSLSGMYSLPFL---TAPGSQLLG 130 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.130 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,262,417 Number of Sequences: 219361 Number of extensions: 819835 Number of successful extensions: 3832 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 3567 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3820 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
